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N. Shapiro · SciRah

Researcher profile · Semantic Scholar

N. Shapiro

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N. Shapiro — researcher profile on SciRah

h-index: 29
Works: 156
Citations: 4,281

Most-cited papers

Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software
A. Sczyrba, P. Hofmann, P. Belmann, D. Koslicki +63 more
2017Nature Methods690 citations Open access
Semantic Scholar
Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
Paulina Estrada-de los Santos, M. Palmer, Belén Chávez-Ramírez, C. Beukes +17 more
2018Genes210 citations Open access
Semantic Scholar
Genome‐based evolutionary history of Pseudomonas spp
C. Hesse, F. Schulz, C. Bull, B. T. Shaffer +9 more
2018Environmental Microbiology193 citations
Semantic Scholar
Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
Lennart Kappelmann, Karen Krüger, J. Hehemann, J. Harder +7 more
2018The ISME Journal180 citations Open access
Semantic Scholar
Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
L. Carro, I. Nouioui, V. Sangal, J. Meier-Kolthoff +13 more
2018Scientific Reports109 citations Open access
Semantic Scholar
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
C. Beukes, M. Palmer, Puseletso Manyaka, Wai Y. Chan +20 more
2017Frontiers in Microbiology106 citations Open access
Semantic Scholar
Genome-informed Bradyrhizobium taxonomy: where to from here?
Juanita R. Avontuur, M. Palmer, C. Beukes, Wai Y. Chan +9 more
2019Systematic and Applied Microbiology83 citations Open access
Semantic Scholar
Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant–cyanobacteria symbiosis
D. Warshan, Josh L. Espinoza, R. Stuart, R. Richter +13 more
2017The ISME Journal74 citations Open access
Semantic Scholar
Critical Assessment of Metagenome Interpretation – a benchmark of computational metagenomics software
A. Sczyrba, P. Hofmann, P. Belmann, D. Koslicki +63 more
2017bioRxiv61 citations Open access
Semantic Scholar
Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
R. Seshadri, S. Roux, Katharina J. Huber, Dongying Wu +36 more
2022Cell Genomics55 citations Open access
Semantic Scholar
Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
D. Warshan, Anton Liaimer, Eric R. A. Pederson, Sea-Yong Kim +7 more
2018Molecular biology and evolution52 citations Open access
Semantic Scholar
Absence of genome reduction in diverse, facultative endohyphal bacteria
D. Baltrus, Kevin M. Dougherty, K. Arendt, M. Huntemann +15 more
2016bioRxiv46 citations Open access
Semantic Scholar
Direct pathway cloning of the sodorifen biosynthetic gene cluster and recombinant generation of its product in E. coli
Elke R. Duell, P. D'Agostino, N. Shapiro, T. Woyke +2 more
2019Microbial Cell Factories43 citations Open access
Semantic Scholar
Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria
L. Hutt, M. Huntemann, A. Clum, M. Pillay +11 more
2017Standards in Genomic Sciences43 citations Open access
Semantic Scholar
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
Nikolaos Strepis, Henry D. Naranjo, J. Meier-Kolthoff, M. Göker +6 more
2020BMC Genomics39 citations Open access
Semantic Scholar
Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments
K. Scott, John Williams, Cody M. B. Porter, S. Russel +64 more
2018Environmental Microbiology39 citations Open access
Semantic Scholar
Influence of the polar light cycle on seasonal dynamics of an Antarctic lake microbial community
Pratibha Panwar, M. Allen, T. Williams, Alyce M. Hancock +14 more
2020Microbiome38 citations Open access
Semantic Scholar
Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil
Marlen C. Rice, J. Norton, F. Valois, A. Bollmann +22 more
2016Standards in Genomic Sciences37 citations Open access
Semantic Scholar
Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism
Olga A. Lastovetsky, Lev D. Krasnovsky, Xiao-Tian Qin, M. Gaspar +15 more
2020mBio34 citations Open access
Semantic Scholar
Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
J. Goordial, I. Raymond-Bouchard, R. Riley, J. Ronholm +9 more
2016Genome Announcements27 citations Open access
Semantic Scholar
Genomic analysis of three Bifidobacterium species isolated from the calf gastrointestinal tract
W. Kelly, A. Cookson, E. Altermann, S. Lambie +6 more
2016Scientific Reports26 citations Open access
Semantic Scholar
Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
D. N. Proença, W. Whitman, N. Varghese, N. Shapiro +3 more
2017Systematic and Applied Microbiology25 citations Open access
Semantic Scholar
Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress
S. Mukhtar, A. Hirsch, N. Khan, K. A. Malik +22 more
2019bioRxiv23 citations Open access
Semantic Scholar
Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
Ryan D. Ward, J. Stajich, J. Johansen, M. Huntemann +16 more
2021Microbiology Resource Announcements22 citations Open access
Semantic Scholar
Mixotrophic Iron-Oxidizing Thiomonas Isolates from an Acid Mine Drainage-Affected Creek
D. Akob, Michelle Hallenbeck, F. Beulig, M. Fabisch +7 more
2020Applied and Environmental Microbiology22 citations Open access
Semantic Scholar
Hymenobacter artigasi sp. nov., isolated from air sampling in maritime Antarctica.
D. Roldán, N. Kyrpides, T. Woyke, N. Shapiro +5 more
2020International Journal of Systematic and Evolutionary Microbiology16 citations Open access
Semantic Scholar
Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs.
G. López, C. Díaz-Cárdenas, J. Alzate, L. González +5 more
2018International Journal of Systematic and Evolutionary Microbiology16 citations Open access
Semantic Scholar
Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production
Luis E. Moraes, M. Blow, Erik R. Hawley, H. Piao +6 more
2017AMB Express16 citations Open access
Semantic Scholar
Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion
Pilar Martínez-Hidalgo, Ethan Humm, D. Still, Baochen Shi +17 more
2021Plant and Soil15 citations Open access
Semantic Scholar
Bosea psychrotolerans sp. nov., a psychrotrophic alphaproteobacterium isolated from Lake Michigan water.
Richard A. Albert, Molly McGuine, Shawn C Pavlons, Jon Roecker +11 more
2019International Journal of Systematic and Evolutionary Microbiology15 citations Open access
Semantic Scholar
Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes
G. López, C. Díaz-Cárdenas, N. Shapiro, T. Woyke +5 more
2017Standards in Genomic Sciences15 citations Open access
Semantic Scholar
Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota
Nancy O. Nou, Jonathan K Covington, Deng-Xun Lai, X. Mayali +39 more
2024Nature Communications14 citations Open access
Semantic Scholar
Phylogenomics and genetic analysis of solvent-producing Clostridium species
Rasmus O Jensen, F. Schulz, S. Roux, D. Klingeman +20 more
2024Scientific Data13 citations Open access
Semantic Scholar
Red seaweed supplementation suppresses methanogenesis in the rumen, revealing potentially advantageous traits among hydrogenotrophic bacteria
Pengfan Zhang, B. Roque, P. Romero, N. Shapiro +4 more
2024bioRxiv13 citations Open access
Semantic Scholar
DNA Methylation in Ensifer Species during Free-Living Growth and during Nitrogen-Fixing Symbiosis with Medicago spp.
G. diCenzo, L. Cangioli, Quentin Nicoud, Janis H. T. Cheng +7 more
2021bioRxiv13 citations Open access
Semantic Scholar
Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil
G. Pold, Erin M. Conlon, M. Huntemann, M. Pillay +8 more
2018Genome Announcements13 citations Open access
Semantic Scholar
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460
V. Matrosova, E. K. Gaidamakova, K. Makarova, O. Grichenko +34 more
2017Standards in Genomic Sciences13 citations Open access
Semantic Scholar
High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698)
Yogita M. Patil, Nicolai Müller, B. Schink, William B. Whitman +14 more
2017Standards in Genomic Sciences12 citations Open access
Semantic Scholar
Draft Genome Sequence of Methylocapsa palsarum NE2T, an Obligate Methanotroph from Subarctic Soil
K. K. Miroshnikov, A. Didriksen, D. G. Naumoff, M. Huntemann +14 more
2017Genome Announcements12 citations Open access
Semantic Scholar
Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater
Lučka Simon, Jure Škraban, N. Kyrpides, T. Woyke +5 more
2017Antonie van Leeuwenhoek12 citations Open access
Semantic Scholar
Improved Draft Genome Sequence of Pseudomonas poae A2-S9, a Strain with Plant Growth-Promoting Activity
Ye Xia, Seth Debolt, Qin Ma, Adam McDermaid +4 more
2019Microbiology Resource Announcements11 citations Open access
Semantic Scholar
Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium
F. Rojas-Rojas, E. Tapia-García, Maskit Maymon, Ethan Humm +15 more
2017Standards in Genomic Sciences11 citations Open access
Semantic Scholar
Draft genome of Rosenbergiella nectarea strain 8N4T provides insights into the potential role of this species in its plant host
Sivan Laviad-Shitrit, I. Izhaki, W. Whitman, N. Shapiro +3 more
2020PeerJ10 citations Open access
Semantic Scholar
Draft genome sequence of Actinotignum schaalii DSM 15541T: Genetic insights into the lifestyle, cell fitness and virulence
A. F. Yassin, Stefan Langenberg, M. Huntemann, A. Clum +11 more
2017PLoS ONE10 citations Open access
Semantic Scholar
Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan
Scott C Thomas, Devon Payne, Kevin O. Tamadonfar, Cale O. Seymour +30 more
2021Frontiers in Microbiology9 citations Open access
Semantic Scholar
Hymenobacter caeli sp. nov., an airborne bacterium isolated from King George Island, Antarctica.
D. Roldán, N. Kyrpides, T. Woyke, N. Shapiro +5 more
2021International Journal of Systematic and Evolutionary Microbiology9 citations
Semantic Scholar
Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
M. R. Sahib, Piao Yang, Norbert T. Bokros, N. Shapiro +4 more
2019Microbiology Resource Announcements9 citations Open access
Semantic Scholar
Draft genome and description of Consotaella salsifontis gen. nov. sp. nov., a halophilic, free-living, nitrogen-fixing alphaproteobacterium isolated from an ancient terrestrial saline spring.
C. Díaz-Cárdenas, Luisa Fernanda Bernal, A. Caro-Quintero, G. López +7 more
2017International Journal of Systematic and Evolutionary Microbiology8 citations Open access
Semantic Scholar
High-Quality Draft Genome Sequence of the Siderophilic and Thermophilic Leptolyngbyaceae Cyanobacterium JSC-12
I. Brown, S. Tringe, N. Ivanova, L. Goodwin +6 more
2021Microbiology Resource Announcements7 citations Open access
Semantic Scholar
High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals
Lidija Izrael-Živković, V. Beškoski, Milena Rikalović, S. Kazazić +6 more
2019Extremophiles7 citations
Semantic Scholar

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