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M. Hadjithomas · SciRah

Researcher profile · Semantic Scholar

M. Hadjithomas

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M. Hadjithomas — researcher profile on SciRah

h-index: 16
Works: 32
Citations: 3,650

Most-cited papers

Minimum Information about a Biosynthetic Gene cluster
M. Medema, R. Kottmann, P. Yilmaz, M. Cummings +150 more
2015Nature Chemical Biology819 citations Open access
Semantic Scholar
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R. Seshadri, S. Leahy, G. Attwood, Koon Hoong Teh +20 more
2018Nature Biotechnology559 citations Open access
Semantic Scholar
Total Synthesis of a Functional Designer Eukaryotic Chromosome
N. Annaluru, H. Muller, L. Mitchell, S. Ramalingam +76 more
2014Science540 citations Open access
Semantic Scholar
IMG/M: integrated genome and metagenome comparative data analysis system
I-Min A. Chen, V. Markowitz, K. Chu, K. Palaniappan +12 more
2016Nucleic Acids Res.422 citations Open access
Semantic Scholar
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
H. Lorenzi, A. Khan, M. Behnke, S. Namasivayam +28 more
2016Nature Communications256 citations Open access
Semantic Scholar
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
Supratim Mukherjee, R. Seshadri, N. Varghese, E. Eloe-Fadrosh +17 more
2017Nature Biotechnology248 citations Open access
Semantic Scholar
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
Eileen P. Hamilton, A. Kapusta, P. Huvos, Shelby L. Bidwell +32 more
2016eLife148 citations Open access
Semantic Scholar
Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lanthipeptides
Alexander M. Kloosterman, Peter Cimermancic, S. Elsayed, Chao Du +5 more
2020PLoS Biology105 citations Open access
Semantic Scholar
IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
M. Hadjithomas, I-Min A. Chen, K. Chu, A. Ratner +10 more
2015mBio99 citations Open access
Semantic Scholar
Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila
M. Cervantes, Eileen P. Hamilton, Jie Xiong, M. Lawson +4 more
2013PLoS Biology96 citations Open access
Semantic Scholar
IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
M. Hadjithomas, I-Min A. Chen, K. Chu, Jinghua Huang +6 more
2016Nucleic Acids Res.78 citations Open access
Semantic Scholar
Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols
S. Forry, Stephanie L. Servetas, J. Kralj, Keng Soh +29 more
2023bioRxiv69 citations Open access
Semantic Scholar
Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system
I-Min A. Chen, V. Markowitz, K. Palaniappan, E. Szeto +10 more
2016BMC Genomics51 citations Open access
Semantic Scholar
Hidden genomic evolution in a morphospecies—The landscape of rapidly evolving genes in Tetrahymena
Jie Xiong, Wentao Yang, Kai Chen, Chuanqi Jiang +13 more
2019PLoS Biology39 citations Open access
Semantic Scholar
Structural Characterization of the Rous Sarcoma Virus RNA Stability Element
Jason E Weil, M. Hadjithomas, K. Beemon
2008Journal of Virology28 citations Open access
Semantic Scholar
Experimental evidence for the role of domain swapping in the evolution of the histone fold
M. Hadjithomas, E. Moudrianakis
2011Proceedings of the National Academy of Sciences of the United States of America22 citations Open access
Semantic Scholar
Supplementary feeding of cattle-yak in the cold season alters rumen microbes, volatile fatty acids, and expression of SGLT1 in the rumen epithelium
Yu-Zhu Sha, Jiang Hu, Bin-Gang Shi, R. Dingkao +219 more
2021PeerJ16 citations Open access
Semantic Scholar
Development of platforms for functional characterization and production of phenazines using a multi-chassis approach via CRAGE.
Jing Ke, Zhi-Ying Zhao, C. Coates, M. Hadjithomas +7 more
2021Metabolic Engineering16 citations Open access
Semantic Scholar
An integrated workflow for phenazine-modifying enzyme characterization
R. Coates, B. Bowen, Ernst Oberortner, L. Thomashow +19 more
2018Journal of Industrial Microbiology & Biotechnology11 citations Open access
Semantic Scholar
Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
Jian-Yu Jiao, L. Carro, Lan Liu, Xiao-Yang Gao +15 more
2017Standards in Genomic Sciences9 citations Open access
Semantic Scholar
Genomic Discovery and Structure–Activity Exploration of a Novel Family of Enzyme-Activated Covalent Cyclin-Dependent Kinase Inhibitors
Jack R. Davison, M. Hadjithomas, S. P. Romeril, Y. Choi +37 more
2024Journal of Medicinal Chemistry7 citations Open access
Semantic Scholar
Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products
Alexander M. Kloosterman, Peter Cimermancic, S. Elsayed, Chao Du +5 more
2020bioRxiv7 citations Open access
Semantic Scholar
Correction: Selecting One of Several Mating Types through Gene Segment Joining and Deletion in Tetrahymena thermophila
M. Cervantes, Eileen P. Hamilton, Jie Xiong, M. Lawson +4 more
2015PLoS Biology7 citations Open access
Semantic Scholar
Total synthesis of a functional designer eukaryotic chromosome (Science (2014) 344, 6179 (55-58))
Narayana Annaluru, H. Muller, Leslie A. Mitchell, S. Ramalingam +76 more
20142 citations
Semantic Scholar
Local Admixture of Amplified and Diversified Secreted Local Admixture of Amplified and Diversified Secreted Pathogenesis Determinants Shapes Mosaic Pathogenesis Determinants Shapes Mosaic Toxoplasma gondii Genomes Genomes
H. Lorenzi, A. Khan, M. Behnke, S. Namasivayam +28 more
20210 citations
Semantic Scholar
decRiPPter datasets - Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products
Alexander M. Kloosterman, Peter Cimermancic, S. Elsayed, Chao Du +4 more
20200 citations
Semantic Scholar
Local Admixture of Amplified and Diversified Secreted Pathogenesis Determinants Shapes Mosaic <em>Toxoplasma gondii</em> Genomes
H. Lorenzi, A. Khan, M. Behnke, S. Namasivayam +28 more
20200 citations
Semantic Scholar
Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
Jian-Yu Jiao, L. Carro, Lan Liu, Xiao-Yang Gao +15 more
2017Standards in Genomic Sciences0 citations Open access
Semantic Scholar
Lawrence Berkeley National Laboratory Recent Work Title Supporting community annotation and user collaboration in the integrated microbial genomes ( IMG ) system Permalink
I-Min A. Chen, V. Markowitz, K. Palaniappan, E. Szeto +10 more
20160 citations
Semantic Scholar
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
H. Lorenzi, A. Khan, M. Behnke, S. Namasivayam +28 more
20160 citations
Semantic Scholar
Author response: Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
Eileen P. Hamilton, A. Kapusta, P. Huvos, Shelby L. Bidwell +32 more
20160 citations Open access
Semantic Scholar
Genomic Analysis Through High-Throughput Sequencing
M. Hadjithomas
20150 citations
Semantic Scholar

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