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A. Pati · SciRah

Researcher profile · Semantic Scholar

A. Pati

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A. Pati — researcher profile on SciRah

h-index: 46
Works: 415
Citations: 15K

Most-cited papers

Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters
Peter Cimermancic, M. Medema, J. Claesen, Kenji L. Kurita +11 more
2014Cell928 citations Open access
Semantic Scholar
Minimum Information about a Biosynthetic Gene cluster
M. Medema, R. Kottmann, P. Yilmaz, M. Cummings +150 more
2015Nature Chemical Biology819 citations Open access
Semantic Scholar
Microbial species delineation using whole genome sequences
N. Varghese, Supratim Mukherjee, Natalia N. Ivanova, K. Konstantinidis +3 more
2015Nucleic Acids Research677 citations Open access
Semantic Scholar
The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
M. Huntemann, Natalia N. Ivanova, K. Mavromatis, H. Tripp +9 more
2015Standards in Genomic Sciences314 citations Open access
Semantic Scholar
Tarlatamab, a First-in-Class DLL3-Targeted Bispecific T-Cell Engager, in Recurrent Small-Cell Lung Cancer: An Open-Label, Phase I Study
L. Paz-Ares, S. Champiat, W. Lai, H. Izumi +21 more
2023Journal of Clinical Oncology286 citations Open access
Semantic Scholar
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
Supratim Mukherjee, R. Seshadri, N. Varghese, E. Eloe-Fadrosh +17 more
2017Nature Biotechnology248 citations Open access
Semantic Scholar
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
M. Bendall, Sarah L. R. Stevens, L. Chan, S. Malfatti +15 more
2016The ISME Journal235 citations Open access
Semantic Scholar
Large-scale contamination of microbial isolate genomes by Illumina PhiX control
Supratim Mukherjee, M. Huntemann, Natalia N. Ivanova, N. Kyrpides +1 more
2015Standards in Genomic Sciences150 citations Open access
Semantic Scholar
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
E. Eloe-Fadrosh, D. Páez-Espino, J. Jarett, P. Dunfield +15 more
2016Nature Communications147 citations Open access
Semantic Scholar
The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4)
M. Huntemann, Natalia N. Ivanova, K. Mavromatis, H. Tripp +10 more
2016Standards in Genomic Sciences137 citations Open access
Semantic Scholar
Patterns in Wetland Microbial Community Composition and Functional Gene Repertoire Associated with Methane Emissions
Shaomei He, S. Malfatti, J. McFarland, F. Anderson +7 more
2015mBio123 citations Open access
Semantic Scholar
IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites
M. Hadjithomas, I-Min A. Chen, K. Chu, A. Ratner +10 more
2015mBio99 citations Open access
Semantic Scholar
Delineating bacterial subspecies Additional file 3 to : “ Complete genome sequence of DSM 30083 T , the type strain ( U 5 / 41 T ) of Escherichia coli , and a proposal for delineating subspecies in microbial taxonomy
J. Meier-Kolthoff, R. Hahnke, Jörn Petersen, C. Scheuner +15 more
201489 citations
Semantic Scholar
ProDeGe: a computational protocol for fully automated decontamination of genomes
Kristin Tennessen, Evan Andersen, Scott R. Clingenpeel, C. Rinke +7 more
2015The ISME Journal74 citations Open access
Semantic Scholar
Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China
Xiao-Yang Gao, Xiao-Yang Zhi, Hong-Wei Li, Yu Zhou +14 more
2015Standards in Genomic Sciences72 citations Open access
Semantic Scholar
Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.
A. Oulas, P. Polymenakou, R. Seshadri, H. Tripp +12 more
2016Environmental Microbiology34 citations Open access
Semantic Scholar
Correlation of ROS1 Immunohistochemistry With ROS1 Fusion Status Determined by Fluorescence In Situ Hybridization.
R. Huang, Derek Smith, C. Le, Wen-Wei Liu +24 more
2020Archives of Pathology & Laboratory Medicine31 citations Open access
Semantic Scholar
Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina
L. S. Tisa, N. Beauchemin, Michael N. Cantor, T. Furnholm +22 more
2015Genome Announcements30 citations Open access
Semantic Scholar
Genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain R7A
Simon Kelly, J. Sullivan, C. Ronson, R. Tian +13 more
2014Standards in Genomic Sciences24 citations Open access
Semantic Scholar
Ten years of maintaining and expanding a microbial genome and metagenome analysis system.
V. Markowitz, I-Min A. Chen, K. Chu, A. Pati +2 more
2015Trends in Microbiology21 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512
S. D. De Meyer, E. Fabiano, R. Tian, P. van Berkum +9 more
2015Standards in Genomic Sciences21 citations Open access
Semantic Scholar
Complete Genome Sequence of the Opitutaceae Bacterium Strain TAV5, a Potential Facultative Methylotroph of the Wood-Feeding Termite Reticulitermes flavipes
Malini Kotak, J. Isanapong, L. Goodwin, D. Bruce +9 more
2015Genome Announcements20 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Rhizobium sullae strain WSM1592; a Hedysarum coronarium microsymbiont from Sassari, Italy
R. Yates, J. Howieson, S. D. De Meyer, R. Tian +11 more
2015Standards in Genomic Sciences17 citations Open access
Semantic Scholar
High quality draft genome sequence of Flavobacterium rivuli type strain WB 3.3-2T (DSM 21788T), a valuable source of polysaccharide decomposing enzymes
R. Hahnke, E. Stackebrandt, J. Meier-Kolthoff, B. Tindall +16 more
2015Standards in Genomic Sciences16 citations Open access
Semantic Scholar
Toward a standard in structural genome annotation for prokaryotes
H. Tripp, G. Sutton, Owen White, J. Wortman +6 more
2015Standards in Genomic Sciences16 citations Open access
Semantic Scholar
Complete genome sequence of Actinosynnema mirum type strain (101)
M. Land, A. Lapidus, S. Mayilraj, Feng Chen +36 more
201416 citations
Semantic Scholar
High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.
S. McIlroy, A. Lapidus, T. R. Thomsen, James Han +11 more
2015Standards in Genomic Sciences15 citations Open access
Semantic Scholar
High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6T), a diphenol degrader with genes involved in the catechol pathway
S. Ntougias, A. Lapidus, James Han, K. Mavromatis +7 more
2014Standards in Genomic Sciences14 citations Open access
Semantic Scholar
Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279T), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia
M. Göker, Megan Lu, A. Fiebig, Matt Nolan +30 more
2014Standards in Genomic Sciences14 citations Open access
Semantic Scholar
Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
M. Huntemann, Natalia N. Ivanova, K. Mavromatis, H. Tripp +9 more
2016Standards in Genomic Sciences13 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India
H. Gehlot, J. Ardley, N. Tak, R. Tian +16 more
2016Standards in Genomic Sciences13 citations Open access
Semantic Scholar
Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022)
A. Pati, K. Labutti, R. Pukall, Matt Nolan +33 more
201413 citations
Semantic Scholar
High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains
Arantxa Peña, A. Busquets, M. Gomila, M. Mulet +12 more
2016Standards in Genomic Sciences12 citations Open access
Semantic Scholar
Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and “Thermoanaerobacter cellulolyticus”
Laura L. Lee, J. Izquierdo, Sara E. Blumer-Schuette, J. Zurawski +21 more
2015Genome Announcements12 citations Open access
Semantic Scholar
An integrated workflow for phenazine-modifying enzyme characterization
R. Coates, B. Bowen, Ernst Oberortner, L. Thomashow +19 more
2018Journal of Industrial Microbiology & Biotechnology11 citations Open access
Semantic Scholar
Genome Sequence of Halomonas sp. Strain MCTG39a, a Hydrocarbon-Degrading and Exopolymeric Substance-Producing Bacterium
T. Gutierrez, William B. Whitman, M. Huntemann, A. Copeland +17 more
2015Genome Announcements10 citations Open access
Semantic Scholar
Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1T, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake
T. Berben, D. Sorokin, N. Ivanova, A. Pati +4 more
2015Standards in Genomic Sciences10 citations Open access
Semantic Scholar
Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
T. Gutierrez, William B. Whitman, M. Huntemann, A. Copeland +17 more
2015Genome Announcements10 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris
R. Mhamdi, J. Ardley, R. Tian, R. Seshadri +7 more
2015Standards in Genomic Sciences9 citations Open access
Semantic Scholar
High quality draft genome sequence of Leucobacter chironomi strain MM2LBT (DSM 19883T) isolated from a Chironomus sp. egg mass
Sivan Laviad, A. Lapidus, A. Copeland, T. Reddy +9 more
2015Standards in Genomic Sciences9 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama
R. Tian, M. Parker, R. Seshadri, T. Reddy +8 more
2015Standards in Genomic Sciences8 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
S. D. De Meyer, R. Tian, R. Seshadri, T. Reddy +8 more
2015Standards in Genomic Sciences8 citations Open access
Semantic Scholar
High-quality draft genome sequence of Gracilimonas tropica CL-CB462T (DSM 19535T), isolated from a Synechococcus culture
D. Choi, Chisang Ahn, G. Jang, A. Lapidus +13 more
2015Standards in Genomic Sciences8 citations Open access
Semantic Scholar
Complete genome sequence of Archaeoglobus profundus type strain (AV18)
M. von Jan, A. Lapidus, T. Del Rio, A. Copeland +40 more
20148 citations
Semantic Scholar
The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
B. Eardly, W. A. Meor Osman, J. Ardley, J. Zandberg +13 more
2022Frontiers in Microbiology7 citations Open access
Semantic Scholar
Genome Sequence of Arenibacter algicola Strain TG409, a Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
T. Gutierrez, William B. Whitman, M. Huntemann, A. Copeland +17 more
2016Genome Announcements6 citations Open access
Semantic Scholar
Draft Genome Sequence of the Cellulolytic and Xylanolytic Thermophile Clostridium clariflavum Strain 4-2a
E. A. Rooney, K. Rowe, Anna Guseva, M. Huntemann +16 more
2015Genome Announcements6 citations Open access
Semantic Scholar
Genome Sequence of Polycyclovorans algicola Strain TG408, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton
T. Gutierrez, Haydn Frank Thompson, A. Angelova, William B. Whitman +19 more
2015Genome Announcements6 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6
S. D. De Meyer, M. Parker, P. van Berkum, R. Tian +9 more
2015Standards in Genomic Sciences6 citations Open access
Semantic Scholar
High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
S. Ntougias, A. Lapidus, A. Copeland, T. Reddy +8 more
2015Standards in Genomic Sciences6 citations Open access
Semantic Scholar

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