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N. Juty · SciRah

Researcher profile · Semantic Scholar

N. Juty

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N. Juty — researcher profile on SciRah

h-index: 26
Works: 82
Citations: 7,391

Most-cited papers

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
M. Hucka, A. Finney, H. Sauro, H. Bolouri +39 more
2003Bioinform.3,350 citations Open access
Semantic Scholar
A community-driven global reconstruction of human metabolism
I. Thiele, Neil Swainston, R. Fleming, A. Hoppe +42 more
2013Nature Biotechnology1,081 citations Open access
Semantic Scholar
FAIR Principles: Interpretations and Implementation Considerations
Annika Jacobsen, R. de Miranda Azevedo, N. Juty, Dominique Batista +40 more
2020Data Intelligence429 citations Open access
Semantic Scholar
Controlled vocabularies and semantics in systems biology
Mélanie Courtot, N. Juty, C. Knüpfer, Dagmar Waltemath +23 more
2011Molecular Systems Biology326 citations Open access
Semantic Scholar
BioModels: ten-year anniversary
V. Chelliah, N. Juty, I. Ajmera, Raza Ali +16 more
2014Nucleic Acids Res.289 citations Open access
Semantic Scholar
SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating, D. Waltemath, Matthias König, Feng-Kai Zhang +137 more
2020Molecular Systems Biology269 citations Open access
Semantic Scholar
Identifiers.org and MIRIAM Registry: community resources to provide persistent identification
N. Juty, N. Le Novère, C. Laibe
2011Nucleic Acids Res.198 citations Open access
Semantic Scholar
Tools and data services registry: a community effort to document bioinformatics resources
J. Ison, Kristoffer Rapacki, H. Ménager, M. Kalaš +65 more
2015Nucleic Acids Res.156 citations Open access
Semantic Scholar
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
J. McMurry, N. Juty, N. Blomberg, Tony Burdett +40 more
2017bioRxiv145 citations Open access
Semantic Scholar
Applying the FAIR Principles to computational workflows
Sean R. Wilkinson, Meznah Aloqalaa, K. Belhajjame, M. Crusoe +19 more
2024Scientific Data91 citations Open access
Semantic Scholar
European infrastructures to access one million human genomes by 2022
Gary Saunders, M. Baudis, Regina Becker, S. Beltran +37 more
2019Nature reviews genetics89 citations Open access
Semantic Scholar
BioModels: Content, Features, Functionality, and Use
N. Juty, Raza Ali, M. Glont, Sarah M. Keating +7 more
2015CPT: Pharmacometrics & Systems Pharmacology70 citations Open access
Semantic Scholar
Designing and encoding models for synthetic biology
L. Endler, Nicolas Rodriguez, N. Juty, V. Chelliah +3 more
2009Journal of the Royal Society Interface68 citations Open access
Semantic Scholar
The FAIR Cookbook - the essential resource for and by FAIR doers
P. Rocca-Serra, Wei Gu, V. Ioannidis, Tooba Abbassi-Daloii +58 more
2023Scientific Data66 citations Open access
Semantic Scholar
Harmonizing semantic annotations for computational models in biology
M. Neal, Matthias König, D. Nickerson, Goksel Misirli +25 more
2018bioRxiv64 citations Open access
Semantic Scholar
WorkflowHub: a registry for computational workflows
O. J. R. Gustafsson, Sean R. Wilkinson, F. Bacall, S. Soiland-Reyes +11 more
2024Scientific Data63 citations Open access
Semantic Scholar
Uniform resolution of compact identifiers for biomedical data
Sarala M. Wimalaratne, N. Juty, J. Kunze, G. Janée +7 more
2017Scientific Data60 citations Open access
Semantic Scholar
Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR
N. Juty, Sarala M. Wimalaratne, S. Soiland-Reyes, J. Kunze +2 more
2020Data Intelligence46 citations Open access
Semantic Scholar
The Impact of Mathematical Modeling in Understanding the Mechanisms Underlying Neurodegeneration: Evolving Dimensions and Future Directions
A. Lloret-Villas, T. Varusai, N. Juty, C. Laibe +3 more
2017CPT: Pharmacometrics & Systems Pharmacology46 citations Open access
Semantic Scholar
FAIR in action - a flexible framework to guide FAIRification
Danielle Welter, N. Juty, P. Rocca-Serra, Fu-Qi Xu +19 more
2023Scientific Data44 citations Open access
Semantic Scholar
MELTING, a flexible platform to predict the melting temperatures of nucleic acids
M. Dumousseau, Nicolas Rodriguez, N. Juty, N. Le Novère
2012BMC Bioinformatics40 citations Open access
Semantic Scholar
The evolution of standards and data management practices in systems biology
N. Stanford, K. Wolstencroft, Martin Golebiewski, Renate Kania +9 more
2015Molecular Systems Biology38 citations Open access
Semantic Scholar
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
Dagmar Waltemath, Frank T. Bergmann, C. Chaouiya, Tobias Czauderna +17 more
2011Standards in Genomic Sciences31 citations Open access
Semantic Scholar
Meeting Report from the Second “Minimum Information for Biological and Biomedical Investigations” (MIBBI) workshop
C. Kettner, D. Field, S. Sansone, Chris F. Taylor +25 more
2010Standards in Genomic Sciences30 citations Open access
Semantic Scholar
“Be sustainable”: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling
Romain David, A. Rybina, Jean-Marie Burel, J. Hériché +55 more
2023EMBO Journal29 citations Open access
Semantic Scholar
The health care and life sciences community profile for dataset descriptions
M. Dumontier, A. Gray, M. S. Marshall, Vladimir Alexiev +26 more
2016PeerJ26 citations Open access
Semantic Scholar
Exploring the Current Practices, Costs and Benefits of FAIR Implementation in Pharmaceutical Research and Development: A Qualitative Interview Study
Ebtisam Alharbi, R. Skeva, N. Juty, Caroline Jay +1 more
2021Data Intelligence22 citations Open access
Semantic Scholar
RO-Crate Metadata Specification 1.1.1
P. Sefton, Eoghan Ó Carragáin, S. Soiland-Reyes, Óscar Corcho +35 more
202120 citations
Semantic Scholar
Selection of data sets for FAIRification in drug discovery and development: Which, why, and how?
Ebtisam Alharbi, Yojana Gadiya, D. Henderson, A. Zaliani +14 more
2022Drug Discovery Today19 citations Open access
Semantic Scholar
Dataset Descriptions: HCLS Community Profile
A. Gray, J. Baran, M. S. Marshall, M. Dumontier +27 more
201518 citations
Semantic Scholar
An Analysis of Crosswalks from Research Data Schemas to Schema.org
Ming-Fang Wu, S. Richard, C. Verhey, Leyla Jael Castro +2 more
2022Data Intelligence17 citations Open access
Semantic Scholar
Simultaneous Modelling of Metabolic, Genetic and Product-interaction Networks
N. Juty, Hugh D. Spence, H. Hotz, Haizhou Tang +2 more
2001Briefings Bioinform.16 citations Open access
Semantic Scholar
A FAIR-Decide framework for pharmaceutical R&D: FAIR data cost-benefit assessment.
Ebtisam Alharbi, R. Skeva, N. Juty, C. Jay +1 more
2023Drug Discovery Today12 citations Open access
Semantic Scholar
SPARQL-enabled identifier conversion with Identifiers.org
Sarala M. Wimalaratne, Jerven T. Bolleman, N. Juty, Toshiaki Katayama +5 more
2015Bioinform.12 citations Open access
Semantic Scholar
Features of a FAIR vocabulary
Fu-Qi Xu, N. Juty, C. Goble, S. Jupp +2 more
2023Journal of Biomedical Semantics11 citations Open access
Semantic Scholar
Data Integration and Semantic Enrichment of Systems Biology Models and Simulations
V. Chelliah, L. Endler, N. Juty, C. Laibe +3 more
2009Data Integration in the Life Sciences11 citations
Semantic Scholar
Identifiers.org: Compact Identifier services in the cloud
Manuel Bernal-Llinares, Javier Ferrer-Gómez, N. Juty, C. Goble +2 more
2020Bioinform.10 citations Open access
Semantic Scholar
Towards the Collaborative Curation of the Registry underlying identifiers.org
N. Juty, N. Le Novère, H. Hermjakob, C. Laibe
2013Database J. Biol. Databases Curation9 citations Open access
Semantic Scholar
Kinetic Simulation Algorithm Ontology
A. Zhukova, Dagmar Waltemath, N. Juty, C. Laibe +1 more
20119 citations Open access
Semantic Scholar
The Input Signal Step Function (ISSF), a Standard Method to Encode Input Signals in SBML Models with Software Support, Applied to Circadian Clock Models
R. Adams, N. Tsorman, K. Stratford, O. Akman +4 more
2012Journal of Biological Rhythms8 citations Open access
Semantic Scholar
What are Researchers' Needs in Data Discovery? Analysis and Ranking of a Large-Scale Collection of Crowdsourced Use Cases
Brigitte Mathiak, N. Juty, A. Bardi, J. Colomb +1 more
2023Data Science Journal7 citations Open access
Semantic Scholar
Systems Biology Ontology: Update
N. Juty
20107 citations Open access
Semantic Scholar
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
Dagmar Waltemath, Frank T. Bergmann, Claudine Chaouiya, Tobias Czauderna +17 more
2018Standards in Genomic Sciences6 citations Open access
Semantic Scholar
BioHackathon 2015: Semantics of data for life sciences and reproducible research
R. Vos, Toshiaki Katayama, H. Mishima, S. Kawano +73 more
2020F1000Research5 citations Open access
Semantic Scholar
Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022
Gary Saunders, M. Baudis, Regina Becker, S. Beltran +37 more
2019Nature reviews genetics5 citations Open access
Semantic Scholar
Controlled annotations for systems biology.
N. Juty, C. Laibe, N. Le Novère
2013Methods in molecular biology4 citations
Semantic Scholar
SBML Level 3 Package Proposal: Annotation
M. Hucka, C. Laibe, N. Juty, Wolfram Liebermeister +14 more
20114 citations Open access
Semantic Scholar
Moving towards FAIR mappings and crosswalks
Jana Martínková, N. Juty, Alejandra Noemí González Beltrán, Carole A. Goble +1 more
2024Joint Ontology Workshops3 citations
Semantic Scholar
Identifiers.org Compact Identifier services
Sarala M. Wimalaratne, Manuel Bernal-Llinares, N. Juty, H. Hermjakob
20183 citations
Semantic Scholar
10 Simple rules for design, provision, and reuse of identifiers for web-based life science data
J. McMurry, J. Muilu, M. Dumontier, H. Hermjakob +32 more
20153 citations
Semantic Scholar

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