Jean-Marie Burel

Most-cited papers

1. Metadata matters: access to image data in the real world

   M. Linkert, C. Rueden, Chris Allan, Jean-Marie Burel +12 more

   2010Journal of Cell Biology1,014 citations Open access

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2. OME Remote Objects (OMERO): a flexible, model-driven data management system for experimental biology

   Chris Allan, Jean-Marie Burel, Josh Moore, Colin Blackburn +20 more

   2012Nature Methods348 citations Open access

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3. The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging

   I. Goldberg, Chris Allan, Jean-Marie Burel, Douglas A. Creager +6 more

   2005Genome Biology348 citations Open access

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4. OME-NGFF: a next-generation file format for expanding bioimaging data access strategies

   Josh Moore, Chris Allan, S. Besson, Jean-Marie Burel +10 more

   2021Nature Methods176 citations Open access

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5. OME-Zarr: a cloud-optimized bioimaging file format with international community support

   Josh Moore, Daniela Basurto-Lozada, S. Besson, J. Bogovic +65 more

   2023Histochemistry and Cell Biology134 citations Open access

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6. Bringing Open Data to Whole Slide Imaging

   S. Besson, Roger Leigh, M. Linkert, Chris Allan +11 more

   2019European Congress on Digital Pathology60 citations Open access

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7. Metadata management for high content screening in OMERO

   Simon W. Li, S. Besson, Colin Blackburn, Mark Carroll +17 more

   2016Methods52 citations Open access

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8. Publishing and sharing multi-dimensional image data with OMERO

   Jean-Marie Burel, S. Besson, Colin Blackburn, Mark Carroll +15 more

   2015Mammalian Genome52 citations Open access

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9. OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale

   Josh Moore, M. Linkert, Colin Blackburn, Mark Carroll +16 more

   2015Medical Imaging37 citations Open access

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10. Open tools for storage and management of quantitative image data.

    Josh Moore, Chris Allan, Jean-Marie Burel, Brian Loranger +3 more

    2008Methods in Cell Biology35 citations

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11. “Be sustainable”: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling

    Romain David, A. Rybina, Jean-Marie Burel, J. Hériché +55 more

    2023EMBO Journal29 citations Open access

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12. OME-NGFF: scalable format strategies for interoperable bioimaging data

    Josh Moore, Chris Allan, S. Besson, Jean-Marie Burel +10 more

    2021bioRxiv23 citations Open access

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13. OME Files - An open source reference library for the OME-XML metadata model and the OME-TIFF file format

    Roger Leigh, D. Gault, M. Linkert, Jean-Marie Burel +3 more

    2016bioRxiv10 citations Open access

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14. Almost contact structures and harmonic maps with minimal fibres

    Jean-Marie Burel

    20049 citations

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15. The Open Microscopy Environment: open image informatics for the biological sciences

    Colin Blackburn, Chris Allan, S. Besson, Jean-Marie Burel +19 more

    2016Astronomical Telescopes + Instrumentation3 citations

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16. Building capacity in imaging data management

    Silvia Melina Velasquez, Georgina Fletcher, Jean-Marie Burel, M. Parsons +21 more

    2026Journal of Microscopy2 citations Open access

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17. Search, organize, aggregate and share image data with BioFile Finder (BFF)

    Sean L. Meharry, A. Borensztejn, Nathalie Gaudreault, J. Lucas +19 more

    2026Nature Methods2 citations

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18. Towards a project community approach to academic scientific software development

    Scott Loynton, D. Sloan, Jean-Marie Burel, C. MacAulay

    20092009 5th IEEE International Conference on E-Science Workshops2 citations

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19. On the geometry of the Gauss map of conformal foliations by lines

    Jean-Marie Burel, Sigmundur Gudmundsson

    2004Mathematical Proceedings of the Cambridge Philosophical Society2 citations

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20. Open File Formats for High Content Analysis

    J. Swedlow, C. Rueden, Jean-Marie Burel, M. Linkert +3 more

    20071 citations

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21. Conformal subfoliations of prescribed geodesic curvature

    P. Baird, Jean-Marie Burel

    20031 citations Open access

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22. Multiscale discriminant analysis for texture classification of high resolution sonar images

    C. Collet, Jean-Marie Burel, Eric Borderie

    19991 citations

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23. Bioimage management and analysis in Galaxy: Tools, workflows, training, and community practices.

    Leonid Kostrykin, R. Massei, Diana Chiang, T. Wollmann +22 more

    2026Journal of Microscopy0 citations Open access

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24. IDR searcher: a search engine solution for public image resources

    Khaled Mohamed, W. Moore, Dominik Lindner, Josh Moore +4 more

    2025bioRxiv0 citations Open access

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25. bia-binder: a web-native cloud compute service for the bioimage analysis community

    Craig T. Russell, Jean-Marie Burel, Awais Athar, Simon W. Li +5 more

    2024Bioinform.0 citations Open access

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26. Usage-inspired Interactive Digital Pathology System for Pathology Instruction in Indonesia

    E. Dwianingsih, D. N. M. Adyaksa, P. Walczysko, A. Kusumastuti +2 more

    2024medRxiv0 citations Open access

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27. OME-Zarr: a cloud-optimized bioimaging file format with international community support

    Josh Moore, Daniela Basurto-Lozada, S. Besson, J. Bogovic +65 more

    2023bioRxiv0 citations Open access

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28. EOSC-Life EOSC repository deployment for project demonstrators

    H. Parkinson, P. Gribbon, U. Sarkans, G. Witt +46 more

    20210 citations Open access

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29. ome/ome-zarr-py: 0.0.15

    Josh Moore, W. Moore, Jean-Marie Burel, Simon W. Li +4 more

    20200 citations

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30. The Open Microscopy Environment: Informatics and Quantitative Analysis for Biological Microscopy

    J. Swedlow, Chris Allan, Jean-Marie Burel, M. Linkert +8 more

    2009Microscopy and Microanalysis0 citations Open access

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31. Quantitative image analysis and the Open Microscopy Environment

    J. Swedlow, Chris Allan, Andrea Falconi, Jean-Marie Burel

    20050 citations

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32. Almost symplectic structures and harmonic morphisms

    Jean-Marie Burel

    20040 citations

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