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Sarah M. Keating · SciRah

Researcher profile · Semantic Scholar

Sarah M. Keating

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Sarah M. Keating — researcher profile on SciRah

h-index: 22
Works: 64
Citations: 5,828

Most-cited papers

A community-driven global reconstruction of human metabolism
I. Thiele, Neil Swainston, R. Fleming, A. Hoppe +42 more
2013Nature Biotechnology1,081 citations Open access
Semantic Scholar
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0
Laurent Heirendt, Sylvain Arreckx, T. Pfau, Sebastián N. Mendoza +51 more
2019Nature Protocols1,072 citations Open access
Semantic Scholar
LibSBML: an API Library for SBML
B. Bornstein, Sarah M. Keating, A. Jouraku, M. Hucka
2008Bioinform.422 citations Open access
Semantic Scholar
BioModels—15 years of sharing computational models in life science
Rahuman S. Malik-Sheriff, M. Glont, Tung V. N. Nguyen, Krishna Tiwari +20 more
2019Nucleic Acids Res.383 citations Open access
Semantic Scholar
Controlled vocabularies and semantics in systems biology
Mélanie Courtot, N. Juty, C. Knüpfer, Dagmar Waltemath +23 more
2011Molecular Systems Biology326 citations Open access
Semantic Scholar
BioModels: ten-year anniversary
V. Chelliah, N. Juty, I. Ajmera, Raza Ali +16 more
2014Nucleic Acids Res.289 citations Open access
Semantic Scholar
SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating, D. Waltemath, Matthias König, Feng-Kai Zhang +137 more
2020Molecular Systems Biology269 citations Open access
Semantic Scholar
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project.
M. Hucka, A. Finney, B. Bornstein, Sarah M. Keating +7 more
2004Systems biology253 citations Open access
Semantic Scholar
Path2Models: large-scale generation of computational models from biochemical pathway maps
F. Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek +22 more
2013BMC Systems Biology174 citations Open access
Semantic Scholar
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0.
Laurent Heirendt, Sylvain Arreckx, T. Pfau, Sebastián N. Mendoza +47 more
2017168 citations
Semantic Scholar
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools
C. Chaouiya, D. Bérenguier, Sarah M. Keating, A. Naldi +20 more
2013BMC Systems Biology162 citations Open access
Semantic Scholar
SBMLToolbox: an SBML toolbox for MATLAB users
Sarah M. Keating, B. Bornstein, A. Finney, M. Hucka
2006Bioinform.151 citations Open access
Semantic Scholar
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2
M. Hucka, Frank T. Bergmann, C. Chaouiya, Andreas Dräger +13 more
2018Journal of Integrative Bioinformatics145 citations Open access
Semantic Scholar
Systems Biology Markup Language (SBML) Level 2: Structures and Facilities for Model Definitions
M. Hucka, Stefan Hoops, Sarah M. Keating, N. Le Novère +2 more
2007The Web Conference137 citations Open access
Semantic Scholar
Wikidata as a knowledge graph for the life sciences
A. Waagmeester, Gregory S. Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M. Good +26 more
2020eLife132 citations Open access
Semantic Scholar
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core
M. Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops +9 more
2010Journal of Integrative Bioinformatics130 citations Open access
Semantic Scholar
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core
M. Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops +9 more
2018Journal of Integrative Bioinformatics77 citations Open access
Semantic Scholar
BioModels: Content, Features, Functionality, and Use
N. Juty, Raza Ali, M. Glont, Sarah M. Keating +7 more
2015CPT: Pharmacometrics & Systems Pharmacology70 citations Open access
Semantic Scholar
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core (Release 1 Candidate)
M. Hucka, Frank T. Bergmann, Stefan Hoops, Sarah M. Keating +2 more
201041 citations Open access
Semantic Scholar
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
A. Niarakis, Dagmar Waltemath, James A. Glazier, Falk Schreiber +9 more
2022Briefings Bioinform.34 citations Open access
Semantic Scholar
SBML Level 3 package: Render, Version 1, Release 1
Frank T. Bergmann, Sarah M. Keating, R. Gauges, S. Sahle +1 more
2018Journal of Integrative Bioinformatics31 citations Open access
Semantic Scholar
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions
M. Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops +9 more
2015Journal of Integrative Bioinformatics27 citations Open access
Semantic Scholar
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1
C. Chaouiya, Sarah M. Keating, D. Bérenguier, A. Naldi +4 more
2015Journal of Integrative Bioinformatics21 citations
Semantic Scholar
Software Infrastructure for Effective Communication and Reuse of Computational Models
A. Finney, M. Hucka, B. Bornstein, Sarah M. Keating +7 more
200620 citations Open access
Semantic Scholar
SBML Level 3 package: Qualitative Models, Version 1, Release 1
C. Chaouiya, Sarah M. Keating, D. Bérenguier, A. Naldi +4 more
2015Journal of Integrative Bioinformatics19 citations Open access
Semantic Scholar
From FAIR to CURE: Guidelines for Computational Models of Biological Systems
Herbert M. Sauro, E. Agmon, M. Blinov, J. Gennari +47 more
2025arXiv.org18 citations
Semantic Scholar
Specifications of standards in systems and synthetic biology: status and developments in 2020
Falk Schreiber, B. Sommer, Tobias Czauderna, Martin Golebiewski +7 more
2020Journal of Integrative Bioinformatics16 citations Open access
Semantic Scholar
MOCCASIN: converting MATLAB ODE models to SBML
H. Gómez, M. Hucka, Sarah M. Keating, German Nudelman +2 more
2016Bioinform.16 citations Open access
Semantic Scholar
Supporting SBML as a model exchange format in software applications.
Sarah M. Keating, N. Le Novère
2013Methods in molecular biology16 citations
Semantic Scholar
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019
Falk Schreiber, B. Sommer, Gary D Bader, Padraig Gleeson +7 more
2019Journal of Integrative Bioinformatics14 citations Open access
Semantic Scholar
Methods for simulating the dynamics of complex biological processes.
M. Schilstra, S. Martin, Sarah M. Keating
2008Methods in Cell Biology13 citations
Semantic Scholar
A Profile of Today's SBML-Compatible Software
M. Hucka, Frank T. Bergmann, Sarah M. Keating, Lucian P. Smith
20112011 IEEE Seventh International Conference on e-Science Workshops12 citations
Semantic Scholar
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2
Feng-Kai Zhang, Lucian P. Smith, M. Blinov, J. Faeder +10 more
2020Journal of Integrative Bioinformatics11 citations Open access
Semantic Scholar
FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models
Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier, Matthias König +88 more
2024bioRxiv9 citations Open access
Semantic Scholar
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024
M. Golebiewski, G. Bader, Padraig Gleeson, Thomas E. Gorochowski +7 more
2024Journal of Integrative Bioinformatics8 citations Open access
Semantic Scholar
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017
Falk Schreiber, Gary D Bader, Padraig Gleeson, Martin Golebiewski +7 more
2018Journal of Integrative Bioinformatics8 citations Open access
Semantic Scholar
Introduction to the Systems Biology Workbench
M. Hucka, A. Finney, H. Sauro, Ben Kovitz +3 more
20037 citations
Semantic Scholar
From FAIR to CURE: guidelines for computational models of biological systems
Herbert M. Sauro, E. Agmon, M. Blinov, John H. Gennari +50 more
2026npj Systems Biology and Applications6 citations Open access
Semantic Scholar
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022
Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski +7 more
2023Journal of Integrative Bioinformatics5 citations Open access
Semantic Scholar
Specifications of standards in systems and synthetic biology: status and developments in 2021
Falk Schreiber, Padraig Gleeson, Martin Golebiewski, T. Gorochowski +7 more
2021Journal of Integrative Bioinformatics5 citations Open access
Semantic Scholar
Ten Simple Rules for FAIR Sharing of Experimental and Clinical Data with the Modeling Community
Matthias König, J. Grzegorzewski, Martin Golebiewski, H. Hermjakob +7 more
20215 citations Open access
Semantic Scholar
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
D. Waltemath, M. Golebiewski, M. Blinov, Padraig Gleeson +15 more
2020Journal of Integrative Bioinformatics5 citations Open access
Semantic Scholar
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions
M. Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops +9 more
2015Journal of Integrative Bioinformatics4 citations
Semantic Scholar
SBML Level 3 Package Proposal: Annotation
M. Hucka, C. Laibe, N. Juty, Wolfram Liebermeister +14 more
20114 citations Open access
Semantic Scholar
SBML Models and MathSBML
B. Shapiro, A. Finney, M. Hucka, B. Bornstein +6 more
20074 citations Open access
Semantic Scholar
Wikidata as a FAIR knowledge graph for the life sciences
A. Waagmeester, Gregory S. Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M. Good +26 more
2019bioRxiv3 citations Open access
Semantic Scholar
Encoding Neuronal Models in SBML
Sarah M. Keating, N. Le Novère
20123 citations
Semantic Scholar
Update on libSBML status
Sarah M. Keating
20102 citations Open access
Semantic Scholar
Ten Simple Rules for Sharing Experimental and Clinical Data with the Modeling Community
Matthias König, J. Grzegorzewski, Martin Golebiewski, H. Hermjakob +7 more
20211 citations Open access
Semantic Scholar
cellmlmanip and chaste_codegen: automatic CellML to C++ code generation with fixes for singularities and automatically generated Jacobians
Maurice Hendrix, M. Clerx, Asif U. Tamuri, Sarah M. Keating +3 more
2021Wellcome Open Research1 citations Open access
Semantic Scholar

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