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Alan E. Yocca · SciRah

Researcher profile · Semantic Scholar

Alan E. Yocca

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Alan E. Yocca — researcher profile on SciRah

h-index: 17
Works: 28
Citations: 1,647

Most-cited papers

Origin and evolution of the octoploid strawberry genome
P. Edger, Thomas J. Poorten, R. VanBuren, Michael A. Hardigan +25 more
2019Nature Genetics610 citations Open access
Semantic Scholar
Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry
M. Colle, Courtney P. Leisner, C. Wai, Shujun Ou +21 more
2019GigaScience237 citations Open access
Semantic Scholar
Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff
R. VanBuren, C. Wai, Xuewen Wang, Jeremy D Pardo +11 more
2020Nature Communications149 citations Open access
Semantic Scholar
Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.)
Qin Qiao, P. Edger, L. Xue, L. Qiong +10 more
2021Proceedings of the National Academy of Sciences of the United States of America91 citations Open access
Semantic Scholar
There and back again; historical perspective and future directions for Vaccinium breeding and research studies
P. Edger, M. Iorizzo, N. Bassil, Juliana Benevenuto +35 more
2022Horticulture Research78 citations Open access
Semantic Scholar
Blueprint for Phasing and Assembling the Genomes of Heterozygous Polyploids: Application to the Octoploid Genome of Strawberry
Michael A. Hardigan, Mitchell J. Feldmann, Dominique D. A. Pincot, R. Famula +14 more
202160 citations Open access
Semantic Scholar
Reply to: Revisiting the origin of octoploid strawberry
P. Edger, M. McKain, Alan E. Yocca, S. Knapp +2 more
2019Nature Genetics50 citations Open access
Semantic Scholar
A chromosome‐scale assembly of the bilberry genome identifies a complex locus controlling berry anthocyanin composition
Chen Wu, C. Deng, E. Hilario, N. Albert +17 more
2021Molecular Ecology Resources44 citations
Semantic Scholar
Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory
Abigail E. Bryson, E. Lanier, Kin H. Lau, J. Hamilton +7 more
2023Nature Communications41 citations Open access
Semantic Scholar
Current status and future perspectives on the evolution of cis-regulatory elements in plants.
Alan E. Yocca, P. Edger
2021Current opinion in plant biology39 citations Open access
Semantic Scholar
Linnemannia elongata (Mortierellaceae) stimulates Arabidopsis thaliana aerial growth and responses to auxin, ethylene, and reactive oxygen species
Natalie Vandepol, Julian A. Liber, Alan E. Yocca, Jason M. Matlock +2 more
2021bioRxiv29 citations Open access
Semantic Scholar
Evolution of Conserved Noncoding Sequences in Arabidopsis thaliana
Alan E. Yocca, Zefu Lu, Robert J. Schmitz, M. Freeling +1 more
2019bioRxiv29 citations Open access
Semantic Scholar
Disease Resistance Genetics and Genomics in Octoploid Strawberry
Christopher R. Barbey, Seonghee Lee, S. Verma, Kevin A. Bird +5 more
2019G3: Genes, Genomes, Genetics28 citations Open access
Semantic Scholar
A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus.
B. Mansfeld, Alan E. Yocca, Shujun Ou, A. Harkess +4 more
2023The Plant Journal27 citations Open access
Semantic Scholar
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
Alan E. Yocca, A. Platts, Elizabeth I. Alger, Scott J. Teresi +22 more
2023Horticulture Research25 citations Open access
Semantic Scholar
Vaccinium as a comparative system for understanding of complex flavonoid accumulation profiles and regulation in fruit
N. Albert, M. Iorizzo, M. Mengist, S. Montanari +7 more
2023Plant Physiology24 citations Open access
Semantic Scholar
Exceptional subgenome stability and functional divergence in allotetraploid teff, the primary cereal crop in Ethiopia
R. VanBuren, C. Wai, Jeremy D Pardo, Alan E. Yocca +8 more
2019bioRxiv20 citations Open access
Semantic Scholar
Complementing model species with model clades
Makenzie E. Mabry, R. Abrahams, I. al-Shehbaz, William J. Baker +35 more
2023The Plant Cell17 citations Open access
Semantic Scholar
Blueberry and cranberry pangenomes as a resource for future genetic studies and breeding efforts
Alan E. Yocca, A. Platts, Elizabeth I. Alger, Scott J. Teresi +22 more
2023bioRxiv16 citations Open access
Semantic Scholar
A chromosome-scale assembly for ‘d’Anjou’ pear
Alan E. Yocca, M. Akinyuwa, Nick P. Bailey, Brannan R. Cliver +28 more
2023bioRxiv16 citations Open access
Semantic Scholar
Machine learning approaches to identify core and dispensable genes in pangenomes
Alan E. Yocca, P. Edger
2021bioRxiv11 citations Open access
Semantic Scholar
Author Correction: Origin and evolution of the octoploid strawberry genome
P. Edger, Thomas J. Poorten, R. VanBuren, Michael A. Hardigan +25 more
2019Nature Genetics6 citations Open access
Semantic Scholar
Genome of the North American wild apple species Malus angustifolia
B. Mansfeld, Shujun Ou, Erik Burchard, Alan E. Yocca +5 more
2023bioRxiv5 citations Open access
Semantic Scholar
Landrace and bred accessions of allotetraploid sour cherry (Prunus cerasus L.) reveal variation in subgenome dosage and subgenome expression bias
K. Rhoades, Charity Z. Goeckeritz, Kevin A. Bird, Alan E. Yocca +2 more
2026bioRxiv0 citations Open access
Semantic Scholar
New genomic resources and local adaptation GWAS in wild Malus angustifolia reveal genetic regions for enhancing abiotic resiliency in apple
B. Mansfeld, Zoë Migicovsky, J. Brock, Blake Hewens-Higgins +10 more
2026Horticulture Research0 citations Open access
Semantic Scholar
Haplotype‐phased ‘Ottawa 3’ genome unravels differential reaction of apple rootstock roots to mixed viral infection
L. C. Costa, Christopher Gottschalk, Davis M. Upchurch, O. Hurtado-Gonzales +5 more
2026The Plant Journal0 citations Open access
Semantic Scholar
The evolution of pectate lyase-like genes across land plants, and their roles in haustorium formation in parasitic plant, Triphysaria versicolor (Orobanchaceae)
Hui-Ting Zhang, E. Wafula, Elisabeth A. Kelly, Itsuhiro Ko +7 more
2025bioRxiv0 citations Open access
Semantic Scholar
A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus. Genome of the Pacific Crabapple Malus fusca
B. Mansfeld, Alan E. Yocca, Shujun Ou, A. Harkess +4 more
2023bioRxiv0 citations Open access
Semantic Scholar

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