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Eric P. Nawrocki · SciRah

Researcher profile · Semantic Scholar

Eric P. Nawrocki

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Eric P. Nawrocki — researcher profile on SciRah

h-index: 28
Works: 51
Citations: 23K

Most-cited papers

NCBI prokaryotic genome annotation pipeline
T. Tatusova, M. DiCuccio, A. Badretdin, V. Chetvernin +6 more
2016Nucleic Acids Research6,678 citations Open access
Semantic Scholar
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
D. McDonald, M. Price, J. Goodrich, Eric P. Nawrocki +5 more
2011The ISME Journal4,773 citations Open access
Semantic Scholar
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki, S. Eddy
2013Bioinform.3,335 citations Open access
Semantic Scholar
Rfam 12.0: updates to the RNA families database
Eric P. Nawrocki, Sarah W. Burge, A. Bateman, J. Daub +7 more
2014Nucleic Acids Res.1,051 citations Open access
Semantic Scholar
Rfam: updates to the RNA families database
P. Gardner, J. Daub, J. Tate, Eric P. Nawrocki +7 more
2008Nucleic Acids Res.942 citations Open access
Semantic Scholar
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska +11 more
2020Nucleic Acids Res.924 citations Open access
Semantic Scholar
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families
Ioanna Kalvari, Joanna Argasinska, Natalia Quinones-Olvera, Eric P. Nawrocki +5 more
2017Nucleic Acids Res.896 citations Open access
Semantic Scholar
Rfam 11.0: 10 years of RNA families
Sarah W. Burge, J. Daub, R. Eberhardt, J. Tate +5 more
2012Nucleic Acids Res.808 citations Open access
Semantic Scholar
Rfam: Wikipedia, clans and the “decimal” release
P. Gardner, J. Daub, J. Tate, B. Moore +7 more
2010Nucleic Acids Res.409 citations Open access
Semantic Scholar
Virus Variation Resource – improved response to emergent viral outbreaks
E. Hatcher, Sergey A. Zhdanov, Yiming Bao, O. Blinkova +4 more
2016Nucleic Acids Res.404 citations Open access
Semantic Scholar
Non-coding RNA analysis using the Rfam database
Ioanna Kalvari, Eric P. Nawrocki, Joanna Argasinska, Natalia Quinones-Olvera +3 more
2018Current Protocols in Bioinformatics397 citations Open access
Semantic Scholar
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki, Diana L. Kolbe, S. Eddy
2009Bioinform.383 citations Open access
Semantic Scholar
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
B. Sweeney, Anton I. Petrov, C. E. Ribas, R. Finn +42 more
2020Nucleic Acids Res.360 citations Open access
Semantic Scholar
RNAcentral: a hub of information for non-coding RNA sequences
B. Sweeney, Anton I. Petrov, Boris Burkov, R. Finn +57 more
2018Nucleic Acids Res.320 citations Open access
Semantic Scholar
Query-Dependent Banding (QDB) for Faster RNA Similarity Searches
Eric P. Nawrocki, S. Eddy
2007PLoS Comput. Biol.317 citations Open access
Semantic Scholar
Structural rna homology search and alignment using covariance models
S. Eddy, Eric P. Nawrocki
2009249 citations
Semantic Scholar
Integrating Membrane Transport with Male Gametophyte Development and Function through Transcriptomics1[W]
Kevin W. Bock, D. Honys, J. Ward, S. Padmanaban +4 more
2006Plant Physiology182 citations Open access
Semantic Scholar
R2DT is a framework for predicting and visualising RNA secondary structure using templates
B. Sweeney, D. Hoksza, Eric P. Nawrocki, C. E. Ribas +11 more
2021Nature Communications130 citations Open access
Semantic Scholar
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
Franziska Hufsky, Kevin Lamkiewicz, A. Almeida, A. Aouacheria +51 more
2020Briefings Bioinform.130 citations Open access
Semantic Scholar
Rfam 15: RNA families database in 2025
Nancy Ontiveros, Emma Cooke, Eric P. Nawrocki, Sandra Triebel +6 more
2024bioRxiv123 citations Open access
Semantic Scholar
Rfam 15: RNA families database in 2025
Nancy Ontiveros-Palacios, Emma Cooke, Eric P. Nawrocki, Sandra Triebel +6 more
2024Nucleic Acids Research94 citations Open access
Semantic Scholar
RNIE: genome-wide prediction of bacterial intrinsic terminators
P. Gardner, Lars Barquist, A. Bateman, Eric P. Nawrocki +1 more
2011Nucleic Acids Research88 citations Open access
Semantic Scholar
Annotating functional RNAs in genomes using Infernal.
Eric P. Nawrocki
2014Methods in molecular biology71 citations
Semantic Scholar
Identification and Characterization of a Class of MALAT1-like Genomic Loci.
Bin Zhang, Y. Mao, S. Diermeier, I. Novikova +8 more
2017Cell Reports64 citations Open access
Semantic Scholar
VADR: validation and annotation of virus sequence submissions to GenBank
A. Schäffer, E. Hatcher, Linda Yankie, Lara Shonkwiler +3 more
2019BMC Bioinformatics62 citations Open access
Semantic Scholar
RNAcentral: a hub of information for non-coding RNA sequences
B. Sweeney, Anton I. Petrov, Boris Burkov, R. Finn +57 more
2018Nucleic Acids Research49 citations Open access
Semantic Scholar
Computational identification of functional RNA homologs in metagenomic data
Eric P. Nawrocki, S. Eddy
2013RNA Biology44 citations Open access
Semantic Scholar
Group I introns are widespread in archaea
Eric P. Nawrocki, T. A. Jones, S. Eddy
2018Nucleic Acids Research30 citations Open access
Semantic Scholar
VecScreen_plus_taxonomy: imposing a tax(onomy) increase on vector contamination screening
A. Schäffer, Eric P. Nawrocki, Y. Choi, P. Kitts +2 more
2018Bioinform.27 citations Open access
Semantic Scholar
Sequence analysis Infernal 1 . 0 : inference of RNA alignments
Eric P. Nawrocki, Diana L. Kolbe, S. Eddy
200919 citations
Semantic Scholar
R2DT: a comprehensive platform for visualizing RNA secondary structure
H. McCann, Caeden D. Meade, Loren Dean Williams, Anton S. Petrov +18 more
2025Nucleic Acids Research18 citations Open access
Semantic Scholar
The genome of the colonial hydroid Hydractinia reveals that their stem cells use a toolkit of evolutionarily shared genes with all animals
C. Schnitzler, E. S. Chang, Justin Waletich, Gonzalo Quiroga-Artigas +25 more
2024Genome Research17 citations Open access
Semantic Scholar
Faster SARS-CoV-2 sequence validation and annotation for GenBank using VADR
Eric P. Nawrocki
2022bioRxiv10 citations Open access
Semantic Scholar
Ribovore: ribosomal RNA sequence analysis for GenBank submissions and database curation
A. Schäffer, R. McVeigh, B. Robbertse, C. Schoch +4 more
2021BMC Bioinformatics10 citations Open access
Semantic Scholar
Expansion of the tmRNA sequence database and new tools for search and visualization
Eric P. Nawrocki, Anton I. Petrov, Kelly P. Williams
2025NAR Genomics and Bioinformatics7 citations Open access
Semantic Scholar
The genome of the colonial hydroid Hydractinia reveals their stem cells utilize a toolkit of evolutionarily shared genes with all animals
C. Schnitzler, E. S. Chang, Justin Waletich, Gonzalo Quiroga-Artigas +25 more
2023bioRxiv6 citations Open access
Semantic Scholar
R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types
B. Sweeney, D. Hoksza, Eric P. Nawrocki, C. E. Ribas +11 more
2020bioRxiv4 citations Open access
Semantic Scholar
Meeting report of the RNA Ontology Consortium January 8-9, 2011
A. Birmingham, J. Clemente, N. Desai, J. Gilbert +12 more
2011Standards in Genomic Sciences3 citations Open access
Semantic Scholar
Influenza sequence validation and annotation using VADR
Vincent C. Calhoun, E. Hatcher, Linda Yankie, Eric P. Nawrocki
2024Database J. Biol. Databases Curation2 citations Open access
Semantic Scholar
Application of binary pulse signals to coincidence methods
Jacek J. Dusza, C. González, Vicente J. Serradell García, Eric P. Nawrocki
19942 citations
Semantic Scholar
Rapid automated validation, annotation and publication of SARS-CoV-2 sequences to GenBank
B. Underwood, Linda Yankie, Eric P. Nawrocki, Vasuki Palanigobu +8 more
2022Database J. Biol. Databases Curation1 citations Open access
Semantic Scholar
Genome Analysis Integrating Membrane Transport with Male Gametophyte Development and Function through Transcriptomics 1 [ W ]
Kevin W. Bock, D. Honys, J. Ward, S. Padmanaban +4 more
20061 citations
Semantic Scholar
Identiﬁcation and Characterization of a Class of MALAT1 -like Genomic Loci
Bin Zhang, Y. Mao, S. Diermeier, Sean R. Eddy +8 more
1 citations
Semantic Scholar
Viral non-coding RNA structure annotation and API-based data retrieval with Rfam and R2DT
Philippa Muston, Sandra Triebel, Eric P. Nawrocki, Nancy Ontiveros-Palacios +6 more
2026bioRxiv0 citations Open access
Semantic Scholar
Zika virus sequence and secondary structure analysis using VADR
Emma B. Dickinson, Eric P. Nawrocki
2026bioRxiv0 citations Open access
Semantic Scholar
Automated Annotation and Validation of Human Respiratory Virus Sequences using VADR
Jeffrey Furlong, S. Goya, Eric P. Nawrocki, Vincent C. Calhoun +3 more
2025bioRxiv0 citations
Semantic Scholar
Automated annotation and validation of human respiratory virus sequences using VADR
Jeffrey Furlong, S. Goya, Eric P. Nawrocki, Vincent C. Calhoun +3 more
2025Database J. Biol. Databases Curation0 citations Open access
Semantic Scholar
R2DT: A COMPREHENSIVE PLATFORM FOR VISUALISING RNA SECONDARY STRUCTURE
H. McCann, Caeden D. Meade, Loren Dean Williams, A. S. Petrov +18 more
2024bioRxiv0 citations Open access
Semantic Scholar
Influenza sequence validation and annotation using VADR
Vincent C. Calhoun, E. Hatcher, Linda Yankie, Eric P. Nawrocki
2024bioRxiv0 citations Open access
Semantic Scholar
Resource Identification and Charact erization of a Class of MALAT 1-like Genomic Loci Graphical Abstract Highlights
Bin Zhang, Y. Mao, S. Diermeier, I. Novikova +8 more
20170 citations
Semantic Scholar

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