Skip to content

Home Search Authors Pakistan News Saved

SciRah

SciRah does not host or store research papers. Results come live from free, official scholarly APIs, and every paper links back to its original source.

Data sources

OpenAlex
Semantic Scholar
Crossref
CORE
arXiv
PubMed

Privacy policy Terms of service

R. Bonocora · SciRah

Researcher profile · Semantic Scholar

R. Bonocora

Share profile

R. Bonocora — researcher profile on SciRah

h-index: 17
Works: 32
Citations: 1,214

Most-cited papers

Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network
D. Fitzgerald, R. Bonocora, J. Wade
2014PLoS Genetics198 citations Open access
Semantic Scholar
Widespread suppression of intragenic transcription initiation by H-NS
Shivani S. Singh, Navjot Singh, R. Bonocora, D. Fitzgerald +2 more
2014Genes & Development172 citations Open access
Semantic Scholar
Horizontally acquired AT-rich genes in Escherichia coli cause toxicity by sequestering RNA polymerase
Lisa E. Lamberte, Gabriele Baniulyte, Shivani S. Singh, A. Stringer +5 more
2017Nature Microbiology79 citations Open access
Semantic Scholar
Homing Endonucleases: From Genetic Anomalies to Programmable Genomic Clippers
M. Belfort, R. Bonocora
2014Methods in molecular biology73 citations Open access
Semantic Scholar
The genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12
Garrett T. Wong, R. Bonocora, Alicia N. Schep, Suzannah M. Beeler +10 more
2016bioRxiv72 citations Open access
Semantic Scholar
The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD‐(D/E)‐XK motif
Lei Zhao, R. Bonocora, D. Shub, B. Stoddard
2007EMBO Journal72 citations Open access
Semantic Scholar
The BvgAS Regulon of Bordetella pertussis
K. Moon, R. Bonocora, David D. Kim, Qing Chen +3 more
2017mBio69 citations Open access
Semantic Scholar
Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon
A. Stringer, S. Currenti, R. Bonocora, C. Baranowski +6 more
2013Journal of Bacteriology68 citations Open access
Semantic Scholar
A free-standing homing endonuclease targets an intron insertion site in the psbA gene of cyanophages.
Qinglu Zeng, R. Bonocora, D. Shub
2009Current Biology58 citations Open access
Semantic Scholar
A likely pathway for formation of mobile group I introns suggested by an intron endonuclease and its free-standing homologue that cleave identical intron insertion sites
R. Bonocora, D. Shub
2009Current Biology57 citations Open access
Semantic Scholar
Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding
R. Bonocora, Carol Smith, P. Lapierre, J. Wade
2015PLoS Genetics55 citations Open access
Semantic Scholar
A novel group I intron‐encoded endonuclease specific for the anticodon region of tRNAfMet genes
R. Bonocora, D. Shub
2001Molecular Microbiology45 citations
Semantic Scholar
Chemical Inhibition of Kynureninase Reduces Pseudomonas aeruginosa Quorum Sensing and Virulence Factor Expression.
S. Kasper, R. Bonocora, J. Wade, R. Musah +1 more
2016ACS Chemical Biology35 citations
Semantic Scholar
Non-canonical protein-DNA interactions identified by ChIP are not artifacts
R. Bonocora, D. Fitzgerald, A. Stringer, J. Wade
2013BMC Genomics31 citations Open access
Semantic Scholar
A basic/hydrophobic cleft of the T4 activator MotA interacts with the C-terminus of E. coli σ70 to activate middle gene transcription
R. Bonocora, G. Caignan, Christopher Woodrell, M. H. Werner +1 more
2008Molecular Microbiology26 citations Open access
Semantic Scholar
ChIP-seq for genome-scale analysis of bacterial DNA-binding proteins.
R. Bonocora, J. Wade
2015Methods in molecular biology20 citations
Semantic Scholar
A Self-Splicing Group I Intron in DNA Polymerase Genes of T7-Like Bacteriophages
R. Bonocora, D. Shub
2004Journal of Bacteriology18 citations Open access
Semantic Scholar
A homing endonuclease and the 50-nt ribosomal bypass sequence of phage T4 constitute a mobile DNA cassette
R. Bonocora, Qinglu Zeng, Ethan V. Abel, D. Shub
2011Proceedings of the National Academy of Sciences of the United States of America15 citations Open access
Semantic Scholar
Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12
Garrett T. Wong, R. Bonocora, Alicia N. Schep, Suzannah M. Beeler +10 more
2017Journal of Bacteriology12 citations Open access
Semantic Scholar
Bacteriophage T4 MotA Activator and the β-Flap Tip of RNA Polymerase Target the Same Set of σ70 Carboxyl-terminal Residues*
R. Bonocora, Phillip Decker, S. Glass, L. Knipling +1 more
2011Journal of Biological Chemistry8 citations Open access
Semantic Scholar
Growth of microorganisms in an interfacially driven space bioreactor analog
Joe A. Adam, Shreyash Gulati, A. Hirsa, R. Bonocora
2020npj Microgravity7 citations Open access
Semantic Scholar
Bacteriophage Lytic Enzymes as Antimicrobials
C. Stark, R. Bonocora, J. T. Hoopes, D. Nelson
20107 citations
Semantic Scholar
Effects of Microorganisms on Drop Formation in Microgravity During a Parabolic Flight with Residual Gravity and Jitter
P. McMackin, Joe A. Adam, S. Griffin, R. Bonocora +3 more
2022Microgravity, science and technology5 citations
Semantic Scholar
Correction: Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network
D. Fitzgerald, R. Bonocora, J. Wade
2015PLoS Genetics4 citations Open access
Semantic Scholar
Impaired Striatal Akt Signaling Disrupts Dopamine Homeostasis and Increases Feeding
R. Bonocora, Ethan V. Abel, D. Shub, Qing-chun Zeng
20114 citations
Semantic Scholar
Mapping Homing Endonuclease Cleavage Sites Using In Vitro Generated Protein
R. Bonocora, M. Belfort
2014Methods in molecular biology2 citations Open access
Semantic Scholar
Non-canonical protein-DNA interactions identified by ChIP are not artifacts
R. Bonocora, D. Fitzgerald, A. Stringer, J. Wade
2013BMC Genomics1 citations Open access
Semantic Scholar
Core Regulon Noncanonical Targets and an Expanded and Salmonella enterica AraC Reveal Genome-Scale Analyses of Escherichia coli
J. Wade, Palumbo, A. A. Reilly, Zhen Zhang +7 more
20131 citations
Semantic Scholar
Peer Review #1 of "Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies (v0.1)"
Jason W. Shapiro, C. Putonti, S. Altschul, W. Gish +246 more
20210 citations Open access
Semantic Scholar
Horizontally acquired AT-rich genes in Escherichia coli 3 cause toxicity by sequestering RNA polymerase 4
Lisa E. Lamberte, Gabriele Baniulyte, Shivani S. Singh, A. Stringer +5 more
20180 citations
Semantic Scholar
The structure of a bacterial homing endonuclease : I-Ssp6803I
Lei Zhao, R. Bonocora, D. Shub, B. Stoddard
20070 citations
Semantic Scholar
A Self-Splicing Group I Intron in DNA Polymerase Genes of T7-Like Bacteriophages
R. Bonocora, D. Shub
20050 citations Open access
Semantic Scholar

Frequent co-authors

Invite them to SciRah by sharing their profile.

J. Wade×14
Invite
J. Wade — researcher profile on SciRah
D. Shub×10
Invite
D. Shub — researcher profile on SciRah
A. Stringer×6
Invite
A. Stringer — researcher profile on SciRah
D. Fitzgerald×5
Invite
D. Fitzgerald — researcher profile on SciRah

Shivani S. Singh

×3

Invite

Shivani S. Singh — researcher profile on SciRah

Invite

D. Grainger — researcher profile on SciRah

Invite

M. Belfort — researcher profile on SciRah

Lisa E. Lamberte×2

Invite

Lisa E. Lamberte — researcher profile on SciRah

Gabriele Baniulyte×2

Invite

Gabriele Baniulyte — researcher profile on SciRah

Mathew Stracy×2

Invite

Mathew Stracy — researcher profile on SciRah

A. Kapanidis×2

Invite

A. Kapanidis — researcher profile on SciRah

Garrett T. Wong×2

Invite

Garrett T. Wong — researcher profile on SciRah