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Clemens Wrzodek · SciRah

Researcher profile · Semantic Scholar

Clemens Wrzodek

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Clemens Wrzodek — researcher profile on SciRah

h-index: 16
Works: 29
Citations: 1,107

Most-cited papers

SBML Level 3: an extensible format for the exchange and reuse of biological models
Sarah M. Keating, D. Waltemath, Matthias König, Feng-Kai Zhang +137 more
2020Molecular Systems Biology269 citations Open access
Semantic Scholar
Path2Models: large-scale generation of computational models from biochemical pathway maps
F. Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek +22 more
2013BMC Systems Biology174 citations Open access
Semantic Scholar
JSBML: a flexible Java library for working with SBML
Andreas Dräger, Nicolas Rodriguez, M. Dumousseau, Alexander Dörr +4 more
2011Bioinform.82 citations Open access
Semantic Scholar
Identification of Dlk1-Dio3 imprinted gene cluster noncoding RNAs as novel candidate biomarkers for liver tumor promotion.
Harri Lempiäinen, P. Couttet, F. Bolognani, A. Müller +36 more
2013Toxicological Sciences72 citations Open access
Semantic Scholar
Precise generation of systems biology models from KEGG pathways
Clemens Wrzodek, F. Büchel, Manuel Ruff, Andreas Dräger +1 more
2013BMC Systems Biology64 citations Open access
Semantic Scholar
KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats
Clemens Wrzodek, Andreas Dräger, Andreas Zell
2011Bioinform.63 citations Open access
Semantic Scholar
Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software.
Johannes Eichner, Lars Rosenbaum, Clemens Wrzodek, H. Häring +2 more
2014Journal of chromatography. B, Analytical technologies in the biomedical and life sciences48 citations
Semantic Scholar
JSBML 1.0: providing a smorgasbord of options to encode systems biology models
Nicolas Rodriguez, Alex Thomas, Leandro H. Watanabe, Ibrahim Y. Vazirabad +18 more
2015Bioinform.42 citations Open access
Semantic Scholar
InCroMAP: integrated analysis of cross-platform microarray and pathway data
Clemens Wrzodek, Johannes Eichner, F. Büchel, A. Zell
2012Bioinform.38 citations Open access
Semantic Scholar
Ha‐ras and β‐catenin oncoproteins orchestrate metabolic programs in mouse liver tumors
Elif B. Unterberger, Johannes Eichner, Clemens Wrzodek, Harri Lempiäinen +12 more
2014International Journal of Cancer34 citations Open access
Semantic Scholar
Linking the Epigenome to the Genome: Correlation of Different Features to DNA Methylation of CpG Islands
Clemens Wrzodek, F. Büchel, G. Hinselmann, Johannes Eichner +2 more
2012PLoS ONE32 citations Open access
Semantic Scholar
ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis
Michael Römer, Johannes Eichner, Andreas Dräger, Clemens Wrzodek +2 more
2016PLoS ONE29 citations Open access
Semantic Scholar
Inferring statin-induced gene regulatory relationships in primary human hepatocytes
Adrian Schröder, Johannes Wollnik, Clemens Wrzodek, Andreas Dräger +6 more
2011Bioinform.25 citations Open access
Semantic Scholar
TFpredict and SABINE: Sequence-Based Prediction of Structural and Functional Characteristics of Transcription Factors
Johannes Eichner, F. Topf, Andreas Dräger, Clemens Wrzodek +2 more
2013PLoS ONE21 citations Open access
Semantic Scholar
Evaluation of Toxicogenomics Approaches for Assessing the Risk of Nongenotoxic Carcinogenicity in Rat Liver
Johannes Eichner, Clemens Wrzodek, Michael Römer, H. Ellinger-Ziegelbauer +1 more
2014PLoS ONE20 citations Open access
Semantic Scholar
Parkinson’s disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein
F. Büchel, Sandra Saliger, Andreas Dräger, S. Hoffmann +3 more
2013BMC Neuroscience19 citations Open access
Semantic Scholar
A Toxicogenomic Approach for the Prediction of Murine Hepatocarcinogenesis Using Ensemble Feature Selection
Johannes Eichner, Nadine Kossler, Clemens Wrzodek, A. Kalkuhl +4 more
2013PLoS ONE16 citations Open access
Semantic Scholar
ModuleMaster: A new tool to decipher transcriptional regulatory networks
Clemens Wrzodek, Adrian Schröder, Andreas Dräger, Dierk Wanke +4 more
2010Biosyst.15 citations
Semantic Scholar
Integrative Pathway-Based Approach for Genome-Wide Association Studies: Identification of New Pathways for Rheumatoid Arthritis and Type 1 Diabetes
F. Büchel, F. Mittag, Clemens Wrzodek, A. Zell +2 more
2013PLoS ONE12 citations Open access
Semantic Scholar
Prediction of polyspecificity from antibody sequence data by machine learning
Szabolcs Éliás, Clemens Wrzodek, Charlotte M. Deane, Alain C. Tissot +2 more
2024Frontiers Bioinform.10 citations Open access
Semantic Scholar
Pathway-based visualization of cross-platform microarray datasets
Clemens Wrzodek, Johannes Eichner, A. Zell
2012Bioinform.10 citations Open access
Semantic Scholar
JSBML: a flexible and entirely Java-based library for working with SBML
S. Fröhlich, N. Le Novère, A. Zell, M. Hucka +6 more
20115 citations Open access
Semantic Scholar
Inferring transcriptional regulators for sets of co-expressed genes by multi-objective evolutionary optimization
Adrian Schroder, Clemens Wrzodek, Johannes Wollnik, Andreas Drager +3 more
2011IEEE Congress on Evolutionary Computation4 citations Open access
Semantic Scholar
Parkinson’s disease: dopaminergic nerve cell model is consistent with experimental finding of increased extracellular transport of α-synuclein
F. Büchel, Sandra Saliger, Andreas Dräger, S. Hoffmann +3 more
2013BMC Neuroscience1 citations Open access
Semantic Scholar
integrated analysis of microarray data from different platforms
Clemens Wrzodek
20121 citations
Semantic Scholar
Cerco: Supporting Range Queries with a Hierarchically Structured Peer-to-Peer System
S. Rieche, Klaus Wehrle, L. Petrak, Clemens Wrzodek
2006Proceedings. 2006 31st IEEE Conference on Local Computer Networks1 citations
Semantic Scholar
Inference and integration of biochemical networks with multilayered omics data
Clemens Wrzodek
20130 citations
Semantic Scholar
Documentation for CpG island feature generator
Clemens Wrzodek
20120 citations
Semantic Scholar
ProDGe: investigating protein-protein interactions at the domain level
F. Büchel, Clemens Wrzodek, F. Mittag, Andreas Dräger +2 more
20110 citations Open access
Semantic Scholar

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A. Zell×20
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A. Zell — researcher profile on SciRah
Andreas Dräger×14
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Johannes Eichner×11
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F. Büchel×8
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Nicolas Rodriguez×5

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Roland Keller×4

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Finja Wrzodek×3

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