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C. Daum · SciRah

Researcher profile · Semantic Scholar

C. Daum

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C. Daum — researcher profile on SciRah

h-index: 39
Works: 150
Citations: 4,839

Most-cited papers

Widespread adenine N6-methylation of active genes in fungi
S. Mondo, R. Dannebaum, Rita Kuo, Katherine B. Louie +26 more
2017Nature Genetics330 citations Open access
Semantic Scholar
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass
J. Lovell, Alice H. MacQueen, S. Mamidi, J. Bonnette +62 more
2021Nature216 citations Open access
Semantic Scholar
A comparative genomics study of 23 Aspergillus species from section Flavi
Inge Kjærbølling, T. Vesth, J. Frisvad, J. L. Nybo +33 more
2020Nature Communications179 citations Open access
Semantic Scholar
Construction and comparison of three reference-quality genome assemblies for soybean.
B. Valliyodan, S. Cannon, P. Bayer, S. Shu +26 more
2019The Plant Journal170 citations Open access
Semantic Scholar
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
Inge Kjærbølling, T. Vesth, J. Frisvad, J. L. Nybo +23 more
2018Proceedings of the National Academy of Sciences of the United States of America121 citations Open access
Semantic Scholar
The genomic landscape of molecular responses to natural drought stress in Panicum hallii
J. Lovell, J. Jenkins, D. Lowry, S. Mamidi +23 more
2018Nature Communications118 citations Open access
Semantic Scholar
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
V. Sevim, Ju-Nan Lee, R. Egan, A. Clum +17 more
2019Scientific Data106 citations Open access
Semantic Scholar
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
C. Beukes, M. Palmer, Puseletso Manyaka, Wai Y. Chan +20 more
2017Frontiers in Microbiology106 citations Open access
Semantic Scholar
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory
Rory J. Craig, S. Gallaher, S. Shu, P. Salomé +14 more
2022bioRxiv102 citations Open access
Semantic Scholar
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
Elizabeth A. Cooper, Z. Brenton, B. Flinn, J. Jenkins +13 more
2019BMC Genomics97 citations Open access
Semantic Scholar
DOE JGI Metagenome Workflow
A. Clum, M. Huntemann, Brian Bushnell, Brian Foster +15 more
2021mSystems92 citations Open access
Semantic Scholar
Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring.
Hao Tan, A. Kohler, Renyun Miao, Tian-Hai Liu +21 more
2019Environmental Microbiology88 citations Open access
Semantic Scholar
Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
Sarah B. Carey, J. Jenkins, J. Lovell, F. Maumus +25 more
2021Science Advances85 citations Open access
Semantic Scholar
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
Noé Fernández-Pozo, F. Haas, R. Meyberg, K. Ullrich +16 more
2019The Plant Journal78 citations Open access
Semantic Scholar
Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
S. Wilken, Jonathan M. Monk, Patrick A. Leggieri, Christopher E. Lawson +13 more
2021mSystems65 citations Open access
Semantic Scholar
Persistence and plasticity in bacterial gene regulation
Leo A. Baumgart, Ji Eun Lee, A. Salamov, D. Dilworth +7 more
2021Nature Methods59 citations Open access
Semantic Scholar
Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data.
Paul P. Grabowski, Joseph Evans, C. Daum, Shweta Deshpande +7 more
2017New Phytologist58 citations Open access
Semantic Scholar
Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics
Marc Warwick Van Goethem, A. R. Osborn, B. Bowen, Peter F. Andeer +15 more
2021Communications Biology54 citations Open access
Semantic Scholar
A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology
Sara Calhoun, T. Bell, Lukas R. Dahlin, Yuliya Kunde +12 more
2021Communications Biology53 citations Open access
Semantic Scholar
Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary
C. Marotz, Anukriti Sharma, G. Humphrey, N. Gottel +4 more
2019BioTechniques53 citations Open access
Semantic Scholar
Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
Brent Nowinski, Christa B. Smith, Courtney Thomas, K. Esson +23 more
2019Scientific Data48 citations Open access
Semantic Scholar
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole
Kara Martin, K. Schmidt, Andrew Toseland, C. Boulton +29 more
2021Nature Communications47 citations Open access
Semantic Scholar
The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune
Ioana M. Marian, P. Vonk, I. Valdes, K. Barry +16 more
2021bioRxiv46 citations Open access
Semantic Scholar
Genetic determinants of switchgrass-root-associated microbiota in field sites spanning its natural range.
Joseph A. Edwards, Usha Bishnoi Saran, J. Bonnette, Alice H. MacQueen +10 more
2023Current Biology45 citations Open access
Semantic Scholar
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans
A. Duncan, K. Barry, C. Daum, E. Eloe-Fadrosh +10 more
2022Microbiome45 citations Open access
Semantic Scholar
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus
S. Miyauchi, Hayat Hage, E. Drula, L. Lesage-Meessen +37 more
2020DNA Research44 citations Open access
Semantic Scholar
Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota
I. Kublanov, Olga M. Sigalova, S. Gavrilov, A. Lebedinsky +15 more
2017Frontiers in Microbiology43 citations Open access
Semantic Scholar
Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments
K. Scott, John Williams, Cody M. B. Porter, S. Russel +64 more
2018Environmental Microbiology39 citations Open access
Semantic Scholar
Extensive Genetic Diversity is Present within North American Switchgrass Germplasm
Joseph Evans, Millicent Sanciangco, Kin H. Lau, E. Crisovan +14 more
2018The Plant Genome38 citations Open access
Semantic Scholar
The role of zinc in the adaptive evolution of polar phytoplankton
Nai-Hao Ye, Wentao Han, Andrew Toseland, Yi-Tao Wang +42 more
2022Nature Ecology & Evolution35 citations Open access
Semantic Scholar
Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism
Olga A. Lastovetsky, Lev D. Krasnovsky, Xiao-Tian Qin, M. Gaspar +15 more
2020mBio34 citations Open access
Semantic Scholar
Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers.
Florian Barbi, A. Kohler, K. Barry, P. Baskaran +11 more
2019Environmental Microbiology29 citations Open access
Semantic Scholar
DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
Lori B. Huberman, Vincent W. Wu, D. Kowbel, Ju-Na Lee +4 more
2021Proceedings of the National Academy of Sciences of the United States of America28 citations Open access
Semantic Scholar
The obligate alkalophilic soda‐lake fungus Sodiomyces alkalinus has shifted to a protein diet
A. Grum-Grzhimaylo, D. Falkoski, J. Heuvel, Claudio A. Valero-Jiménez +12 more
2018Molecular Ecology27 citations Open access
Semantic Scholar
Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica.
Paula Nizovoy, N. Bellora, S. Haridas, Hui Sun +6 more
2020FEMS Yeast Research26 citations Open access
Semantic Scholar
Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades
Briana S. Abraham, Deniz Caglayan, Natalie Carrillo, Matthew C. Chapman +23 more
2020Environmental Microbiome26 citations Open access
Semantic Scholar
Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot
A. Camargo, R. S. D. de Souza, Patrícia de Britto Costa, I. R. Gerhardt +23 more
2019Scientific Data26 citations Open access
Semantic Scholar
Genomic variation within the maize stiff‐stalk heterotic germplasm pool
Nolan Bornowski, Kathryn J. Michel, J. Hamilton, Shujun Ou +18 more
2021The Plant Genome25 citations Open access
Semantic Scholar
Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
Candice L. Swift, Katherine B. Louie, B. Bowen, Casey A. Hooker +10 more
2021mBio25 citations Open access
Semantic Scholar
Single-parent expression drives dynamic gene expression complementation in maize hybrids.
Zhi Li, Peng Zhou, Rafael Della Coletta, Ti-Fu Zhang +12 more
2020The Plant Journal24 citations
Semantic Scholar
Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases
K. Frandsen, Morten Tovborg, C. I. Jørgensen, N. Spodsberg +14 more
2019Journal of Biological Chemistry24 citations Open access
Semantic Scholar
Impact of soil salinity on the cowpea nodule-microbiome and the isolation of halotolerant PGPR strains to promote plant growth under salinity stress
S. Mukhtar, A. Hirsch, N. Khan, K. A. Malik +22 more
2019bioRxiv23 citations Open access
Semantic Scholar
Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria
Ryan D. Ward, J. Stajich, J. Johansen, M. Huntemann +16 more
2021Microbiology Resource Announcements22 citations Open access
Semantic Scholar
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
Yue Hao, Makenzie E. Mabry, P. Edger, M. Freeling +17 more
2021Genome Research21 citations Open access
Semantic Scholar
Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids1[OPEN]
P. Crisp, Reza K. Hammond, Peng Zhou, B. Vaillancourt +9 more
2019Plant Physiology21 citations Open access
Semantic Scholar
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution
Xuehua Feng, Jinfang Zheng, I. Irisarri, Hui-Hui Yu +46 more
2023bioRxiv19 citations Open access
Semantic Scholar
Genetic mapping and prediction of flowering time and plant height in a maize Stiff Stalk MAGIC population.
Kathryn J. Michel, D. C. Lima, H. Hundley, V. Singan +7 more
2022Genetics18 citations Open access
Semantic Scholar
Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi
Nicole K. Reynolds, J. Stajich, G. Benny, K. Barry +9 more
2023Genome Biology and Evolution17 citations Open access
Semantic Scholar
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens
Sara Casado López, M. Peng, P. Daly, B. Andreopoulos +11 more
2019Microbiology Resource Announcements17 citations Open access
Semantic Scholar
Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion
Pilar Martínez-Hidalgo, Ethan Humm, D. Still, Baochen Shi +17 more
2021Plant and Soil15 citations Open access
Semantic Scholar

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