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A. Lipzen · SciRah

Researcher profile · Semantic Scholar

A. Lipzen

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A. Lipzen — researcher profile on SciRah

h-index: 61
Works: 368
Citations: 15K

Most-cited papers

The complex polyploid genome architecture of sugarcane
A. Healey, O. Garsmeur, J. Lovell, S. Shengquiang +32 more
2024Nature163 citations Open access
Semantic Scholar
Neurospora intermedia from a traditional fermented food enables waste-to-food conversion
Vayu Maini Rekdal, J. M. Villalobos-Escobedo, Nabila Rodriguez-Valeron, Mikel Olaizola Garcia +20 more
2024Nature Microbiology65 citations Open access
Semantic Scholar
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
A. Steindorff, M. V. Aguilar-Pontes, Aaron J. Robinson, B. Andreopoulos +26 more
2024Communications Biology29 citations Open access
Semantic Scholar
Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales
Carlos Lax, S. Mondo, Macario Osorio-Concepción, Anna Muszewska +20 more
2024Nature Communications25 citations Open access
Semantic Scholar
The genomic footprints of wild Saccharum species trace domestication, diversification, and modern breeding of sugarcane.
O. Garsmeur, Simon Rio, N. Pompidor, A. Lipzen +18 more
2025Cell24 citations Open access
Semantic Scholar
Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces
K. O. Barros, Megan Mader, David J. Krause, J. Pangilinan +7 more
2024Biotechnology for Biofuels and Bioproducts21 citations Open access
Semantic Scholar
Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture
A. Steindorff, Feng M. Cai, Mi Ding, Siqi Jiang +61 more
2026Nature Microbiology17 citations Open access
Semantic Scholar
Stress responses in an Arctic microalga (Pelagophyceae) following sudden salinity change revealed by gene expression analysis
Nastasia J. Freyria, T. C. de Oliveira, M. Chovatia, Jennifer E. Johnson +5 more
2024Communications Biology17 citations Open access
Semantic Scholar
Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi
R. Baroncelli, J. F. Cobo-Díaz, Tiziano Benocci, M. Peng +17 more
2024GigaScience16 citations Open access
Semantic Scholar
Comparative Analyses of Four Reference Genomes Reveal Exceptional Diversity and Weak Linked Selection in the Yellow Monkeyflower (Mimulus guttatus) Complex
J. Lovell, Rachel Walstead, Amelia H. Lawrence, Evan R. Stark-Dykema +18 more
2025Molecular Ecology Resources15 citations Open access
Semantic Scholar
Diverse fates of ancient horizontal gene transfers in extremophilic red algae.
J. Van Etten, T. Stephens, E. Chille, A. Lipzen +4 more
2024Environmental Microbiology15 citations Open access
Semantic Scholar
A multi-omic characterization of the physiological responses to salt stress in Scenedesmus obliquus UTEX393
Colin P. S. Kruse, Sara Calhoun, Bishoy Kamel, Scott J. Edmundson +25 more
2025Communications Biology14 citations Open access
Semantic Scholar
Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations
C. Harder, S. Miyauchi, M. Virágh, A. Kuo +24 more
2024Cell Genomics14 citations Open access
Semantic Scholar
Symmetric adenine methylation is an essential DNA modification in the early-diverging fungus Rhizopus microsporus
Carlos Lax, S. Mondo, J. F. Martínez, Anna Muszewska +13 more
2025Nature Communications13 citations Open access
Semantic Scholar
Hydrophobins from Aspergillus mediate fungal interactions with microplastics
Ross R. Klauer, Rachel Silvestri, Hanna White, Milton Das +11 more
2025Environmental Science and Technology13 citations Open access
Semantic Scholar
Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima
Kelly J DeWeese, Gary Molano, Sara Calhoun, A. Lipzen +11 more
2025Frontiers in Genetics11 citations Open access
Semantic Scholar
Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa
Kevin A. Bird, Jordan R. Brock, Paul P Grabowski, Avril M. Harder +17 more
2024bioRxiv11 citations Open access
Semantic Scholar
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces
Jeffrey J. Czajka, Yichao Han, Joonhoon Kim, S. Mondo +16 more
2024Frontiers in Bioengineering and Biotechnology10 citations Open access
Semantic Scholar
Comparative genomics of the extremophile Cryomyces antarcticus and other psychrophilic Dothideomycetes
Sandra V. Gomez-Gutierrrez, Wily R. Sic-Hernandez, S. Haridas, K. Labutti +7 more
2024bioRxiv10 citations Open access
Semantic Scholar
On the origin of bird's nest fungi: phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota).
N. Kraisitudomsook, S. Ahrendt, R. Riley, K. Labutti +7 more
2024Molecular Phylogenetics and Evolution10 citations Open access
Semantic Scholar
Identification and recombinant expression of a cutinase from Papiliotrema laurentii that hydrolyzes natural and synthetic polyesters
Victor A. Roman, Bryan R. Crable, Dominique N. Wagner, A. Gryganskyi +18 more
2024Applied and Environmental Microbiology10 citations Open access
Semantic Scholar
Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae.
G. Bonito, S. Miyauchi, R. Hayes, Hao Tan +30 more
2025Current Biology8 citations Open access
Semantic Scholar
Comparative transcriptomics provides insights into molecular mechanisms of zinc tolerance in the ectomycorrhizal fungus Suillus luteus
Alexander H. Smith, Jessica Fletcher, Janne Swinnen, Karl Jonckheere +10 more
2024G38 citations Open access
Semantic Scholar
Phyllosticta paracitricarpa is synonymous with the EU quarantine fungus P. Citricarpa based on phylogenomic analyses.
V. A. van Ingen-Buijs, A. V. van Westerhoven, Petros Skiadas, Xander C. L. Zuijdgeest +17 more
2024Fungal Genetics and Biology8 citations Open access
Semantic Scholar
Genomic and transcriptomic characterization of carbohydrate-active enzymes in the anaerobic fungus Neocallimastix cameroonii var. constans
Elaina M. Blair, Tejas A. Navaratna, Colleen B. Ahern, Ramya Ragunathan +13 more
2025bioRxiv7 citations Open access
Semantic Scholar
Phylogenomic insights into the taxonomy, ecology, and mating systems of the lorchel family Discinaceae (Pezizales, Ascomycota).
A. Dirks, A. Methven, A. N. Miller, Michelle Orozco-Quime +16 more
2025Molecular Phylogenetics and Evolution7 citations Open access
Semantic Scholar
Morphogenesis, starvation, and light responses in a mushroom-forming fungus revealed by long-read sequencing and extensive expression profiling
B. Hegedüs, N. Sahu, B. Bálint, S. Haridas +17 more
2025Cell Genomics6 citations Open access
Semantic Scholar
Comparative Transcriptomics of CAZy Enzymes in White- and Brown-Rot Agaricomycetes: Evolutionary Insights into Lignocellulose Degradation and the Relevance of GH16 Glycoside Hydrolase Functional Divergence.
Idoia Jiménez, M. Alfaro, Edurne Garde, Gúmer Pérez +8 more
2025New Biotechnology5 citations Open access
Semantic Scholar
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
S. Theobald, T. Vesth, Elena Geib, J. L. Nybo +31 more
2024Journal of Fungi5 citations Open access
Semantic Scholar
Omics-driven onboarding of the carotenoid producing red yeast Xanthophyllomyces dendrorhous CBS 6938
Emma E. Tobin, Joseph H. Collins, Celeste B. Marsan, Gillian T. Nadeau +5 more
2024bioRxiv5 citations Open access
Semantic Scholar
Expression of dehydroshikimate dehydratase in poplar induces transcriptional and metabolic changes in the phenylpropanoid pathway
Emine Akyuz Turumtay, Halbay Turumtay, Yang Tian, Chien-Yuan Lin +15 more
2024Journal of Experimental Botany5 citations Open access
Semantic Scholar
The Zn(II)2Cys6 transcription factor DsAce3 is a major activator of cellulases in the white-rot fungus Dichomitus squalens
Victor M. Gonzalez Ramos, Joanna E. Kowalczyk, H. N. Maina, J. Talag +9 more
2026Applied and Environmental Microbiology4 citations Open access
Semantic Scholar
Consecutive low-frequency shifts in A/T content denote nucleosome positions across microeukaryotes
S. Mondo, Guifen He, Aditi Sharma, D. Ciobanu +14 more
2025iScience4 citations Open access
Semantic Scholar
Comparative genomics of Aspergillus nidulans and section Nidulantes
S. Theobald, T. Vesth, J. L. Nybo, J. Frisvad +33 more
2025Current Research in Microbial Sciences4 citations Open access
Semantic Scholar
The reference genome for the northeastern Pacific bull kelp, Nereocystis luetkeana
Cicero Alves-Lima, G. Montecinos, M. Escalona, Sara Calhoun +8 more
2025bioRxiv4 citations Open access
Semantic Scholar
Separation of life stages within anaerobic fungi (Neocallimastigomycota) highlights differences in global transcription and metabolism.
Lazarina V. Butkovich, Patrick A. Leggieri, S. Lillington, Tejas A. Navaratna +10 more
2024Fungal Genetics and Biology4 citations Open access
Semantic Scholar
Hydrophobins from Aspergillus mediate fungal interactions with microplastics
Ross R. Klauer, Rachel Silvestri, Hanna White, R. Hayes +9 more
2024bioRxiv4 citations Open access
Semantic Scholar
Transcriptomic Analysis of the CAM Species Kalanchoë fedtschenkoi Under Low- and High-Temperature Regimes
Rongbin Hu, Jin Zhang, S. Jawdy, A. Sreedasyam +11 more
2024Plants4 citations Open access
Semantic Scholar
Global population structures and demographic history of Suillus luteus, a pine co-introduced ectomycorrhizal fungus associated with exotic forestry and invasion
Yi-Hong Ke, A. Bazzicalupo, J. Ruytinx, L. Lofgren +18 more
2026bioRxiv3 citations Open access
Semantic Scholar
Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132
Mariana Regina Almas Do Carmo, Alessia Manassero, R. Ventorim, M. Peng +13 more
2025Zeitschrift für Induktive Abstammungs- und Vererbungslehre3 citations Open access
Semantic Scholar
In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
Idoia Jiménez, Gabriel Roscales, Edurne Garde, Emilia Chuina Tomazeli +7 more
2024Current Research in Biotechnology3 citations Open access
Semantic Scholar
XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent
Nan Zhang, Xiaoou Dong, Rashmi Jain, D. Ruan +6 more
2024PeerJ3 citations Open access
Semantic Scholar
Low Mutation Rate and Atypical Mutation Spectrum in Prasinoderma coloniale: Insights From an Early Diverging Green Lineage
Lisa Mettrop, A. Lipzen, C. Vandecasteele, Camille Eché +5 more
2025Genome Biology and Evolution2 citations Open access
Semantic Scholar
Draft genome assembly and annotation of Haematococcus lacustris strain Liv1, an industrial astaxanthin-producing microalga
Michael J Lashbrook, J. Adesanya, J. Talag, Kathleen Lail +9 more
2025Microbiology Resource Announcements2 citations Open access
Semantic Scholar
Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti.
J. L. Nybo, T. Vesth, S. Theobald, J. Frisvad +33 more
2025Studies in Mycology2 citations Open access
Semantic Scholar
Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome
Kevin A. Bird, J. Rifkin, Chloee M. McLaughlin, Avril M. Harder +22 more
2025bioRxiv2 citations Open access
Semantic Scholar
A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi
Raquel Ledo Doval, A. Müller, Daren W. Brown, Derek Johnson +19 more
2025Marine Biotechnology2 citations
Semantic Scholar
Populus PtrbHLH011 Is a Transcriptional Co‐Regulator Involved in the Activation of Cell Wall Biosynthesis by Iron Deprivation
D. Tadesse, Yuqiu Dai, Geng Li, Lin Yang +11 more
2025Plant Biotechnology Journal2 citations Open access
Semantic Scholar
Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
Victor M. Gonzalez Ramos, A. Müller, M. Peng, M. Pawlowski +8 more
2024Current Research in Biotechnology2 citations Open access
Semantic Scholar
Global population structures and demographic history of Suillus luteus, a pine co‐introduced ectomycorrhizal fungus associated with exotic forestry and invasion
Yi-Hong Ke, A. Bazzicalupo, J. Ruytinx, L. Lofgren +18 more
2026New Phytologist1 citations Open access
Semantic Scholar

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