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S. Penel · SciRah

Researcher profile · Semantic Scholar

S. Penel

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S. Penel — researcher profile on SciRah

h-index: 22
Works: 50
Citations: 1,776

Most-cited papers

Ultra-fast sequence clustering from similarity networks with SiLiX
V. Miele, S. Penel, L. Duret
2011BMC Bioinformatics287 citations Open access
Semantic Scholar
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases
J. Dufayard, L. Duret, S. Penel, M. Gouy +2 more
2005Bioinform.200 citations Open access
Semantic Scholar
Databases of homologous gene families for comparative genomics
S. Penel, Anne-Muriel Arigon, J. Dufayard, A. Sertier +4 more
2009BMC Bioinformatics173 citations Open access
Semantic Scholar
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes
P. Kersey, Lawrence Bower, L. Morris, Alan Horne +16 more
2004Nucleic Acids Res.164 citations Open access
Semantic Scholar
Neutron crystallographic evidence of lipase–colipase complex activation by a micelle
J. Hermoso, D. Pignol, S. Penel, M. Roth +2 more
1997EMBO Journal92 citations Open access
Semantic Scholar
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes.
R. Studer, S. Penel, L. Duret, M. Robinson-Rechavi
2008Genome Research84 citations Open access
Semantic Scholar
Side-chain structures in the first turn of the alpha-helix.
S. Penel, E. Hughes, A. Doig
1999Journal of Molecular Biology83 citations
Semantic Scholar
Effect of the N1 residue on the stability of the α‐helix for all 20 amino acids
D. A. Cochran, S. Penel, Andrew J. Doig
2001Protein Science70 citations Open access
Semantic Scholar
YodA from Escherichia coli Is a Metal-binding, Lipocalin-like Protein*
G. David, K. Blondeau, M. Schiltz, S. Penel +1 more
2003Journal of Biological Chemistry59 citations Open access
Semantic Scholar
Periodicity in alpha-helix lengths and C-capping preferences.
S. Penel, R. Morrison, R. Mortishire-Smith, Andrew J. Doig
1999Journal of Molecular Biology46 citations
Semantic Scholar
Stabilizing nonpolar/polar side‐chain interactions in the α‐helix
C. Andrew, S. Penel, G. Jones, A. Doig
2001Proteins: Structure, Function, and Bioinformatics45 citations
Semantic Scholar
High-quality sequence clustering guided by network topology and multiple alignment likelihood
V. Miele, S. Penel, V. Daubin, F. Picard +2 more
2012Bioinform.40 citations Open access
Semantic Scholar
Integrated databanks access and sequence/structure analysis services at the PBIL
G. Perrière, C. Combet, S. Penel, Christophe Blanchet +7 more
2003Nucleic Acids Res.40 citations Open access
Semantic Scholar
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations
Nicolas Comte, B. Morel, Damir Hasić, L. Guéguen +8 more
2019bioRxiv36 citations Open access
Semantic Scholar
Gearing up to handle the mosaic nature of life in the quest for orthologs
K. Forslund, Cécile Pereira, S. Capella-Gutiérrez, Alana Sousa da Silva +63 more
2017Bioinform.36 citations Open access
Semantic Scholar
Length preferences and periodicity in β‐strands. Antiparallel edge β‐sheets are more likely to finish in non‐hydrogen bonded rings
S. Penel, R. Morrison, P. Dobson, R. Mortishire-Smith +1 more
200336 citations
Semantic Scholar
PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets
Aurore Comte, Théo Tricou, Eric Tannier, Julien Joseph +6 more
2023bioRxiv33 citations Open access
Semantic Scholar
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
Florent Lassalle, Rémi Planel, S. Penel, D. Chapulliot +11 more
2016bioRxiv33 citations Open access
Semantic Scholar
Detergent binding in trigonal crystals of OmpF porin from Escherichia coli.
S. Penel, E. Pebay-Peyroula, J. Rosenbusch, G. Rummel +2 more
1998Biochimie28 citations
Semantic Scholar
RiboDB Database: A Comprehensive Resource for Prokaryotic Systematics.
Frédéric Jauffrit, S. Penel, Stéphane Delmotte, Carine Rey +5 more
2016Molecular biology and evolution23 citations
Semantic Scholar
Rotamer strain energy in protein helices - quantification of a major force opposing protein folding.
S. Penel, Andrew J. Doig
2001Journal of Molecular Biology22 citations
Semantic Scholar
Polymorphix: a sequence polymorphism database
Eric Bazin, L. Duret, S. Penel, N. Galtier
2004Nucleic Acids Res.21 citations Open access
Semantic Scholar
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation
S. Penel, H. Menet, Théo Tricou, V. Daubin +1 more
2022Bioinform.16 citations Open access
Semantic Scholar
Evolutionary Plasticity of Mating-Type Determination Mechanisms in Paramecium aurelia Sibling Species
N. Sawka-Gądek, A. Potekhin, D. Singh, I. Grevtseva +7 more
2020Genome Biology and Evolution16 citations Open access
Semantic Scholar
Determination of α‐helix N1 energies after addition of N1, N2, and N3 preferences to helix/coil theory
Jia-Ke Sun, S. Penel, A. Doig
2008Protein Science15 citations Open access
Semantic Scholar
Structure, stability and folding of the alpha-helix.
Andrew J. Doig, C. Andrew, D. A. Cochran, E. Hughes +5 more
2001Biochemical Society Symposium14 citations
Semantic Scholar
PhEVER: a database for the global exploration of virus–host evolutionary relationships
L. Palmeira, S. Penel, V. Lotteau, C. Rabourdin-Combe +1 more
2010Nucleic Acids Res.12 citations Open access
Semantic Scholar
Length preferences and periodicity in beta-strands. Antiparallel edge beta-sheets are more likely to finish in non-hydrogen bonded rings.
S. Penel, R. Morrison, P. Dobson, R. Mortishire-Smith +1 more
2003Protein Engineering12 citations
Semantic Scholar
Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates
Rylan Shearn, A. Wright, S. Mousset, C. Régis +6 more
2020eLife9 citations Open access
Semantic Scholar
No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes.
Clémentine M. François, L. Duret, L. Simon, F. Mermillod-Blondin +6 more
2016Molecular biology and evolution8 citations
Semantic Scholar
DigiPINS: a database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies.
V. Navratil, S. Penel, Stéphane Delmotte, D. Mouchiroud +2 more
2008Biochimie6 citations
Semantic Scholar
MAINDEX – manual indexation for area-detector crystallographic data
S. Penel, Pierre Legrand
19976 citations
Semantic Scholar
Stabilising Non-Polar/Polar Side Chain Interactions in the α-Helix
C. Andrew, S. Penel, G. Jones, A. Doig
20004 citations
Semantic Scholar
Breaking the species barrier: recurrent genomic introgressions from very distant lineages in a ciliate
Florian Bénitìere, O. Arnaiz, S. Penel, Xue Zhang +4 more
2026bioRxiv2 citations Open access
Semantic Scholar
tidy tree: A New Layout for Phylogenetic Trees
S. Penel, D. de Vienne
2022Molecular biology and evolution2 citations Open access
Semantic Scholar
Evolutionary stasis of the pseudoautosomal boundary in strepsirrhine primates
Rylan Shearn, A. Wright, S. Mousset, C. Régis +6 more
2018bioRxiv1 citations Open access
Semantic Scholar
Data Retrieval and Handling Tools for the PBIL Gene Family Databases
G. Perrière, J. Dufayard, S. Penel, J. Grassot +2 more
20031 citations
Semantic Scholar
Peer Review #3 of "Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence–structure–function analysis (v0.1)"
C. Fleury, J. Gracy, M. Gautier, Jean-Luc Pons +435 more
20190 citations Open access
Semantic Scholar
Decelerating sex chromosome differentiation in sexually monomorphic primates
Rylan Shearn, É. Lecompte, C. Régis, S. Mousset +4 more
20180 citations
Semantic Scholar
Contrasted sex chromosome evolution in primates with and without sexual dimorphism
Rylan Shearn, É. Lecompte, C. Régis, S. Mousset +5 more
20180 citations
Semantic Scholar
HOGENOM new developments
S. Penel
20150 citations Open access
Semantic Scholar
Informatics and genomics
A. Viari, F. de Coninck, Sandrine Charles, V. Daubin +54 more
20050 citations
Semantic Scholar
YodA from Escherichia coli crystallised with no added ions
G. David, K. Blondeau, Madalena Renouard, S. Penel +1 more
20030 citations
Semantic Scholar
YodA from Escherichia coli crystallised with cadmium ions
G. David, K. Blondeau, Madalena Renouard, S. Penel +1 more
20030 citations
Semantic Scholar
YodA from Escherichia coli crystallised with zinc ions
G. David, K. Blondeau, M. Renouard, S. Penel +1 more
20030 citations
Semantic Scholar
Structure and stability of the alpha-helix
A. Doig, C. Andrew, D. Cochran, E. Hughes +5 more
20020 citations
Semantic Scholar
Structure, Stability and Folding of the α-Helix
A. Doig, C. Andrew, D. A. Cochran, E. Hughes +5 more
20000 citations
Semantic Scholar
Detergent localization in membrane protein crystals using neutron diffraction
P. Timmins, E. Pebay-Peyroula, S. Penel
19960 citations Open access
Semantic Scholar
Gearing up to handle the mosaic nature of life in the quest for orthologs
K. Forslund, Cécile Pereira, Salvador Capella-Gutiérrez, Alana Sousa da Silva +49 more
0 citations
Semantic Scholar
Determination ofa-helix N1 energies after addition of N1, N2, and N3 preferences to helix 0coil theory
Jia-Ke Sun, S. Penel, A. Doig
0 citations
Semantic Scholar

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J. Dufayard×8
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