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A. Viari · SciRah

Researcher profile · Semantic Scholar

A. Viari

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A. Viari — researcher profile on SciRah

h-index: 39
Works: 129
Citations: 12K

Most-cited papers

The complete genome sequence of the Gram-positive bacterium Bacillus subtilis
F. Kunst, N. Ogasawara, I. Moszer, A. Albertini +147 more
1997Nature3,845 citations Open access
Semantic Scholar
Landscape of somatic mutations in 560 breast cancer whole genome sequences
S. Nik-Zainal, H. Davies, J. Staaf, M. Ramakrishna +84 more
2016Nature2,080 citations Open access
Semantic Scholar
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational-signatures
H. Davies, D. Głodzik, S. Morganella, L. Yates +29 more
2017Nature Medicine972 citations Open access
Semantic Scholar
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
Tiayyba Riaz, W. Shehzad, A. Viari, F. Pompanon +2 more
2011Nucleic Acids Research712 citations Open access
Semantic Scholar
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis.
I. Chambaud, R. Heilig, S. Ferris, V. Barbe +8 more
2001Nucleic Acids Research282 citations Open access
Semantic Scholar
Somatic mutations reveal asymmetric cellular dynamics in the early human embryo
Y. Ju, I. Martincorena, M. Gerstung, Mia Petljak +37 more
2017Nature281 citations Open access
Semantic Scholar
Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids
N. Alcala, N. Leblay, A. Gabriel, L. Mangiante +66 more
2019Nature Communications193 citations Open access
Semantic Scholar
Universal replication biases in bacteria
Eduardo P. C. Rocha, A. Danchin, A. Viari
1999Molecular Microbiology181 citations Open access
Semantic Scholar
Molecular screening program to select molecular-based recommended therapies for metastatic cancer patients: analysis from the ProfiLER trial.
O. Trédan, Q. Wang, D. Pissaloux, P. Cassier +33 more
2019Annals of Oncology178 citations Open access
Semantic Scholar
A whole-genome sequence and transcriptome perspective on HER2-positive breast cancers
A. Ferrari, A. Vincent-Salomon, X. Pivot, A. Sertier +39 more
2016Nature Communications146 citations Open access
Semantic Scholar
A gene-expression profiling score for outcome prediction disease in patients with follicular lymphoma: a retrospective analysis on three international cohorts
S. Huet, B. Tesson, J. Jais, A. Feldman +26 more
2018The Lancet Oncology134 citations Open access
Semantic Scholar
Identification of driver genes for critical forms of COVID-19 in a deeply phenotyped young patient cohort
R. Carapito, Richard Li, J. Helms, C. Carapito +60 more
2021Science Translational Medicine113 citations Open access
Semantic Scholar
Innovative approach for transcriptomic analysis of obligate intracellular pathogen: selective capture of transcribed sequences of Ehrlichia ruminantium
Loïc Emboulé, F. Daigle, D. Meyer, B. Mari +9 more
2009BMC Molecular Biology108 citations Open access
Semantic Scholar
UniPathway: a resource for the exploration and annotation of metabolic pathways
A. Morgat, É. Coissac, E. Coudert, K. Axelsen +6 more
2011Nucleic Acids Res.105 citations Open access
Semantic Scholar
Breast cancer genome and transcriptome integration implicates specific mutational signatures with immune cell infiltration
M. Smid, F. G. Rodríguez-González, A. Sieuwerts, Roberto Salgado +43 more
2016Nature Communications102 citations Open access
Semantic Scholar
A high-risk retinoblastoma subtype with stemness features, dedifferentiated cone states and neuronal/ganglion cell gene expression
Jing Liu, D. Ottaviani, M. Sefta, Céline Desbrousses +56 more
2021Nature Communications98 citations Open access
Semantic Scholar
Comparative Genomic Analysis of Three Strains of Ehrlichia ruminantium Reveals an Active Process of Genome Size Plasticity
R. Frutos, A. Viari, C. Ferraz, A. Morgat +8 more
2006Journal of Bacteriology95 citations Open access
Semantic Scholar
Whole-Genome Sequencing Reveals Breast Cancers with Mismatch Repair Deficiency.
H. Davies, S. Morganella, C. Purdie, Se-Jin Jang +12 more
2017Cancer Research91 citations Open access
Semantic Scholar
The immune microenvironment of HPV-negative oral squamous cell carcinoma from never-smokers and never-drinkers patients suggests higher clinical benefit of IDO1 and PD1/PD-L1 blockade
Jean-Philippe Foy, C. Bertolus, M. Michallet, S. Deneuve +19 more
2017Annals of Oncology90 citations Open access
Semantic Scholar
A somatic-mutational process recurrently duplicates germline susceptibility loci and tissue-specific super-enhancers in breast cancers
D. Głodzik, S. Morganella, H. Davies, P. Simpson +26 more
2017Nature Genetics83 citations Open access
Semantic Scholar
EZH2 alterations in follicular lymphoma: biological and clinical correlations
S. Huet, L. Xerri, B. Tesson, S. Mareschal +14 more
2017Blood Cancer Journal80 citations Open access
Semantic Scholar
Analysis of long repeats in bacterial genomes reveals alternative evolutionary mechanisms in Bacillus subtilis and other competent prokaryotes.
E. Rocha, Antoine Danchin, A. Viari
1999Molecular biology and evolution79 citations Open access
Semantic Scholar
Ribosomal RNA 2′O-methylation as a novel layer of inter-tumour heterogeneity in breast cancer
V. Marcel, J. Kielbassa, V. Marchand, K. Natchiar +21 more
2020NAR Cancer70 citations Open access
Semantic Scholar
Repurposing rotavirus vaccines for intratumoral immunotherapy can overcome resistance to immune checkpoint blockade
T. Shekarian, Éva Sivadó, Anne-Catherine Jallas, S. Depil +9 more
2019Science Translational Medicine64 citations
Semantic Scholar
Obesity-associated changes in molecular biology of primary breast cancer
Ha-Linh Nguyen, T. Geukens, M. Maetens, S. Aparicio +56 more
2023Nature Communications63 citations Open access
Semantic Scholar
Imagene: an integrated computer environment for sequence annotation and analysis
C. Médigue, F. Rechenmann, A. Danchin, A. Viari
1999Bioinform.63 citations
Semantic Scholar
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data
F. Boyer, A. Morgat, Laurent Labarre, J. Pothier +1 more
2005Bioinform.61 citations Open access
Semantic Scholar
Reconstruction of Switching Thresholds in Piecewise-Affine Models of Genetic Regulatory Networks
Samuel Drulhe, G. Ferrari-Trecate, H. de Jong, A. Viari
2006International Conference on Hybrid Systems: Computation and Control60 citations Open access
Semantic Scholar
SMAD2/3 mediate oncogenic effects of TGF-β in the absence of SMAD4
Adrien Bertrand-Chapel, Cassandre Caligaris, T. Fenouil, Clara Savary +18 more
2022Communications Biology55 citations Open access
Semantic Scholar
Characterization of Depressive Symptoms Trajectories After Breast Cancer Diagnosis in Women in France
C. Charles, A. Bardet, A. Larive, P. Gorwood +25 more
2022JAMA Network Open47 citations Open access
Semantic Scholar
A 13-gene expression-based radioresistance score highlights the heterogeneity in the response to radiation therapy across HPV-negative HNSCC molecular subtypes
Jean-Philippe Foy, L. Bazire, S. Ortiz-Cuàran, S. Deneuve +10 more
2017BMC Medicine47 citations Open access
Semantic Scholar
Immunological and classical subtypes of oral premalignant lesions
Jean-Philippe Foy, C. Bertolus, S. Ortiz-Cuàran, M. Albaret +15 more
2018Oncoimmunology41 citations Open access
Semantic Scholar
KfouryToll-like receptor 3 downregulation is an escape mechanism from apoptosis during hepatocarcinogenesis.
M. Bonnin, N. Farès, B. Testoni, Y. Estornes +18 more
2019Journal of Hepatology39 citations Open access
Semantic Scholar
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes
A. Smith, E. Belda, A. Viari, C. Médigue +1 more
2012PLoS Comput. Biol.39 citations Open access
Semantic Scholar
Mutational Profile of Aggressive, Localised Prostate Cancer from African Caribbean Men Versus European Ancestry Men.
L. Tonon, G. Fromont, S. Boyault, E. Thomas +15 more
2019European Urology38 citations Open access
Semantic Scholar
Implication of gene distribution in the bacterial chromosome for the bacterial cell factory.
Eduardo P. C. Rocha, P. Guerdoux-Jamet, I. Moszer, A. Viari +1 more
2000Journal of Biotechnology36 citations Open access
Semantic Scholar
Ab initio reconstruction of metabolic pathways
F. Boyer, A. Viari
2003European Conference on Computational Biology35 citations Open access
Semantic Scholar
Genetic diversity and lineage dynamic of dengue virus serotype 1 (DENV-1) in Cambodia.
V. Duong, C. Simmons, L. Gavotte, A. Viari +10 more
2013Infection, Genetics and Evolution33 citations
Semantic Scholar
PepLine: a software pipeline for high-throughput direct mapping of tandem mass spectrometry data on genomic sequences.
M. Ferro, Marianne Tardif, Erwan Reguer, R. Cahuzac +7 more
2008Journal of Proteome Research32 citations
Semantic Scholar
CDYL2 Epigenetically Regulates MIR124 to Control NF-κB/STAT3-Dependent Breast Cancer Cell Plasticity
M. Siouda, Audrey D. Dujardin, L. Barbollat-Boutrand, M. Mendoza-Parra +14 more
2020iScience30 citations Open access
Semantic Scholar
Dynamic of H5N1 virus in Cambodia and emergence of a novel endemic sub-clade.
S. Sorn, T. Sok, Sovann Ly, Sareth Rith +19 more
2013Infection, Genetics and Evolution30 citations
Semantic Scholar
Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito
L. Després, Renaud Stalinski, Frédéric Faucon, V. Navratil +8 more
2014Biology Letters28 citations Open access
Semantic Scholar
Ehrlichia ruminantium: genomic and evolutionary features.
R. Frutos, A. Viari, N. Vachiéry, F. Boyer +1 more
2007Trends in Parasitology28 citations
Semantic Scholar
Acquired somatic MMR deficiency is a major cause of MSI tumor in patients suspected for “Lynch-like syndrome” including young patients
C. Lefol, E. Sohier, C. Baudet, Pierre Naïbo +4 more
2020European Journal of Human Genetics27 citations Open access
Semantic Scholar
HERVs characterize normal and leukemia stem cells and represent a source of shared epitopes for cancer immunotherapy
V. Alcazer, Paola Bonaventura, L. Tonon, Emilie Michel +14 more
2022American journal of hematology/oncology26 citations Open access
Semantic Scholar
Routine molecular screening of advanced refractory cancer patients: An analysis of the first 2490 patients of the ProfiLER study.
O. Trédan, V. Corset, Qing Wang, R. Varnier +16 more
201726 citations
Semantic Scholar
Different Genetic Signatures of Small‐Cell Lung Cancer Characterize Anti‐GABABR and Anti‐Hu Paraneoplastic Neurological Syndromes
A. Vogrig, A. Pégat, M. Villagrán-García, Valentin Wucher +24 more
2023Annals of Neurology24 citations Open access
Semantic Scholar
Gene signature of circulating platelet‐bound neutrophils is associated with poor prognosis in cancer patients
P. Lecot, M. Ardin, S. Dussurgey, V. Alcazer +8 more
2021bioRxiv24 citations Open access
Semantic Scholar
Pairwise and Multiple Identification of Three-Dimensional Common Substructures in Proteins
V. Escalier, Joël Pothier, H. Soldano, A. Viari
1998J. Comput. Biol.24 citations
Semantic Scholar
Automated multiple analysis of protein structures: Application to homology modeling of cytochromes P450
Pascale Jean, J. Pothier, P. Dansette, D. Mansuy +1 more
1997Proteins: Structure, Function, and Bioinformatics24 citations
Semantic Scholar

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