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J. Dufayard · SciRah

Researcher profile · Semantic Scholar

J. Dufayard

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J. Dufayard — researcher profile on SciRah

h-index: 21
Works: 71
Citations: 22K

Most-cited papers

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.
S. Guindon, J. Dufayard, V. Lefort, M. Anisimova +2 more
2010Systematic Biology18K citations Open access
Semantic Scholar
Survey of Branch Support Methods Demonstrates Accuracy, Power, and Robustness of Fast Likelihood-based Approximation Schemes
M. Anisimova, M. Gil, J. Dufayard, C. Dessimoz +1 more
2011Systematic Biology1,159 citations Open access
Semantic Scholar
Estimating maximum likelihood phylogenies with PhyML.
S. Guindon, F. Delsuc, J. Dufayard, O. Gascuel
2009Methods in molecular biology821 citations Open access
Semantic Scholar
The genome sequence of the orchid Phalaenopsis equestris
Jing Cai, Xin Liu, K. Vanneste, S. Proost +34 more
2014Nature Genetics433 citations Open access
Semantic Scholar
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases
J. Dufayard, L. Duret, S. Penel, M. Gouy +2 more
2005Bioinform.200 citations Open access
Semantic Scholar
The Banana Genome Hub
G. Droc, D. Larivière, V. Guignon, N. Yahiaoui +14 more
2013Database J. Biol. Databases Curation177 citations Open access
Semantic Scholar
Databases of homologous gene families for comparative genomics
S. Penel, Anne-Muriel Arigon, J. Dufayard, A. Sertier +4 more
2009BMC Bioinformatics173 citations Open access
Semantic Scholar
Evolutionary Dynamics of the Leucine-Rich Repeat Receptor-Like Kinase (LRR-RLK) Subfamily in Angiosperms1[OPEN]
I. Fischer, A. Diévart, G. Droc, J. Dufayard +1 more
2016Plant Physiology95 citations Open access
Semantic Scholar
Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing
Cui-Fang Duan, X. Argout, V. Gébelin, M. Summo +8 more
2013BMC Genomics85 citations Open access
Semantic Scholar
New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms
J. Dufayard, M. Bettembourg, I. Fischer, G. Droc +4 more
2017Frontiers in Plant Science81 citations Open access
Semantic Scholar
Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis
P. Piyatrakul, R. Putranto, F. Martin, M. Rio +5 more
2012BMC Plant Biology59 citations Open access
Semantic Scholar
In Silico Analysis of Usher Encoding Genes in Klebsiella pneumoniae and Characterization of Their Role in Adhesion and Colonization
F. Khater, Damien Balestrino, N. Charbonnel, J. Dufayard +2 more
2015PLoS ONE54 citations Open access
Semantic Scholar
SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations
A. Dereeper, Felix Homa, Gwendoline Andres, G. Sempéré +4 more
2015Nucleic Acids Res.51 citations Open access
Semantic Scholar
Genomicus in 2022: comparative tools for thousands of genomes and reconstructed ancestors
N. Nguyen, P. Vincens, J. Dufayard, H. Roest Crollius +1 more
2021Nucleic Acids Res.40 citations Open access
Semantic Scholar
Gearing up to handle the mosaic nature of life in the quest for orthologs
K. Forslund, Cécile Pereira, S. Capella-Gutiérrez, Alana Sousa da Silva +63 more
2017Bioinform.36 citations Open access
Semantic Scholar
Evolutionary dynamics of the Leucine-Rich Repeats Receptor-Like Kinase (LRR-RLK) subfamily in angiosperms.
I. Fischer, A. Diévart, G. Droc, J. Dufayard +1 more
201634 citations
Semantic Scholar
Impact of recurrent gene duplication on adaptation of plant genomes
I. Fischer, J. Dainat, V. Ranwez, S. Glémin +2 more
2014BMC Plant Biology30 citations Open access
Semantic Scholar
Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence–structure–function analysis
C. Fleury, J. Gracy, M. Gautier, J. Pons +4 more
2019PeerJ29 citations Open access
Semantic Scholar
PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data
L. Bréhélin, J. Dufayard, O. Gascuel
2008BMC Bioinformatics27 citations Open access
Semantic Scholar
Transcriptional Regulation of Sorghum Stem Composition: Key Players Identified Through Co-expression Gene Network and Comparative Genomics Analyses
Lauriane Hennet, Angélique Berger, N. Trabanco, E. Ricciuti +9 more
2020Frontiers in Plant Science21 citations Open access
Semantic Scholar
Badnaviruses and banana genomes: a long association sheds light on Musa phylogeny and origin
M. Chabannes, Marc Gabriel, Abderrahmane Aksa, S. Galzi +3 more
2020Molecular plant pathology21 citations Open access
Semantic Scholar
Corrigendum: The genome sequence of the orchid Phalaenopsis equestris
Jing Cai, Xin Liu, K. Vanneste, S. Proost +34 more
2015Nature Genetics16 citations Open access
Semantic Scholar
Pedigree-based linkage map in two genetic groups of oil palm
B. Cochard, Catherine Carrasco-Lacombe, V. Pomiès, J. Dufayard +4 more
2015Tree Genetics & Genomes12 citations
Semantic Scholar
Peer Review #2 of "Molecular characterization and phylogenetic analyses of Lophodermella needle pathogens (Rhytismataceae) on Pinus species in the USA and Europe (v0.1)"
J. Ata, K. Burns, S. Marchetti, I. Munck +160 more
202110 citations Open access
Semantic Scholar
The South Green portal: A comprehensive resource for tropical and Mediterranean crop genomics
V. Guignon, Yann Hueber, M. Rouard, S. Bocs +25 more
201610 citations Open access
Semantic Scholar
Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis
J. Leclercq, Shuang-Yang Wu, B. Farinas, S. Pointet +10 more
2020PeerJ9 citations Open access
Semantic Scholar
Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple
Amy Watson, B. Guitton, Alexandre Soriano, R. Rivallan +12 more
2024Frontiers in Plant Science7 citations Open access
Semantic Scholar
Corrigendum: New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms
J. Dufayard, M. Bettembourg, I. Fischer, G. Droc +4 more
2017Frontiers in Plant Science5 citations Open access
Semantic Scholar
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees
J. Dufayard, S. Bocs, V. Guignon, D. Larivière +5 more
2021NAR Genomics and Bioinformatics4 citations Open access
Semantic Scholar
GreenPhylDB: phylogenomic resources for comparative and functional genomics in plants
M. Rouard, V. Guignon, C. Walde, G. Droc +3 more
20114 citations
Semantic Scholar
The South Green Bioinformatics Platform
M. Rouard, A. Dereeper, G. Droc, G. Sarah +14 more
20143 citations
Semantic Scholar
Identification of the Hevea brasiliensisAP2/ERF superfamily by RNA sequencing
Cui-Fang Duan, X. Argout, V. Gébelin, M. Summo +8 more
2013BMC Genomics3 citations Open access
Semantic Scholar
Correction to ‘GreenPhylDB v5: a comparative pangenomic database for plant genomes’
V. Guignon, Abdel Toure, G. Droc, J. Dufayard +2 more
2021Nucleic Acids Research2 citations Open access
Semantic Scholar
The first step of ABA perception and signal transduction in coffee: evolutionary and expression of PYR/PYL/RCARs, PP2Cs and SNRK2s genes in C. canephora under drought
M. G. Cotta, E. Rego, S. Bocs, T. S. Costa +4 more
20161 citations
Semantic Scholar
Role of Galaxy in a bioinformatic plant breeding platform
Vincent Maillol, R. Bacilieri, S. Bocs, J. Boursiquot +14 more
20121 citations
Semantic Scholar
Data Retrieval and Handling Tools for the PBIL Gene Family Databases
G. Perrière, J. Dufayard, S. Penel, J. Grassot +2 more
20031 citations
Semantic Scholar
EVALUATION OF BIOREMEDIATION POTENTIAL OF BACILLUS CEREUS AND ITS OPTIMISATION BY TWO-WAY ANOVA STATISTICAL ANALYSIS
Mayank Rashmi, Tanuja, I. Katsikantami, M. Tzatzarakis +103 more
2022International Journal of Biology Pharmacy and Allied Sciences0 citations Open access
Semantic Scholar
Peer Review #1 of "Evolutionary history of the vertebrate Piwi gene family (v0.1)"
Javier Gutiérrez, R. Platt, J. Opazo, D. Ray +374 more
20210 citations Open access
Semantic Scholar
Peer Review #3 of "The importance of molecular characters when morphological variability hinders diagnosability: systematics of the moon jellyfish genus Aurelia (Cnidaria: Scyphozoa) (v0.1)"
J. Lawley, E. Gamero-Mora, M. Maronna, L. Chiaverano +399 more
20210 citations Open access
Semantic Scholar
Peer Review #2 of "Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites (v0.1)"
Vincent Hervé, Peng-Fei Liu, C. Dietrich, D. Sillam-Dussès +496 more
20200 citations Open access
Semantic Scholar
Peer Review #1 of "Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica) (v0.1)"
F. Mehmood, Abdullah Abdullah, Zartasha Ubaid, I. Shahzadi +496 more
20200 citations Open access
Semantic Scholar
South Green bioinformatic resources for tropical and Mediterranean crops
M. Rouard, S. Bocs, Catherine Marie Breton, Aurore Comte +20 more
20200 citations
Semantic Scholar
The South Green Genome Hubs
G. Droc, X. Argout, S. Bocs, Aurore Comte +15 more
20200 citations
Semantic Scholar
Peer Review #2 of "Post-transcriptional regulation of several biological processes involved in latex production in Hevea brasiliensis (v0.1)"
J. Leclercq, Shuang-Yang Wu, B. Farinas, Stphanie Pointet +327 more
20200 citations Open access
Semantic Scholar
Peer Review #3 of "Embracing heterogeneity: coalescing the Tree of Life and the future of phylogenomics (v0.2)"
Gustavo A. Bravo, A. Antonelli, C. Bacon, K. Bartoszek +496 more
20190 citations Open access
Semantic Scholar
Peer Review #1 of "A draft genome and transcriptome of common milkweed (Asclepias syriaca) as resources for evolutionary, ecological, and molecular studies in milkweeds and Apocynaceae (v0.1)"
K. Weitemier, S. Straub, M. Fishbein, Donovan Bailey +496 more
20190 citations Open access
Semantic Scholar
Peer Review #3 of "Comprehensive classification of the plant non-specific lipid transfer protein superfamily towards its sequence–structure–function analysis (v0.1)"
C. Fleury, J. Gracy, M. Gautier, Jean-Luc Pons +435 more
20190 citations Open access
Semantic Scholar
CompPhy2: a flexible and real time collaborative web platform for editing and comparing phylogenies
Floréal Cabanettes, J. Dufayard, V. Berry, V. Lefort +2 more
20180 citations
Semantic Scholar
RapGreen, a Java package to analyse, display and explore interactively phylogenetic trees
J. Dufayard, D. Larivière, M. Ruiz, Frederic de Lamotte Guéry
20180 citations
Semantic Scholar
The South Green Bioinformatics platform, a comprehensive resource for crop genomics
M. Ruiz, A. Dereeper, G. Droc, G. Sarah +20 more
20170 citations
Semantic Scholar

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