H. Lewin

Most-cited papers

Towards complete and error-free genome assemblies of all vertebrate species
A. Rhie, Shane A. McCarthy, O. Fedrigo, Joana Damas +123 more
2020Nature2,918 citations Open access
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Analyses of pig genomes provide insight into porcine demography and evolution
M. Groenen, A. Archibald, H. Uenishi, C. Tuggle +132 more
2012Nature1,365 citations Open access
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The yak genome and adaptation to life at high altitude
Q. Qiu, Guo-Jie Zhang, T. Ma, W. Qian +44 more
2012Nature Genetics882 citations Open access
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Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates
Joana Damas, Graham M. Hughes, K. Keough, C. Painter +15 more
2020Proceedings of the National Academy of Sciences of the United States of America596 citations Open access
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Correction: Corrigendum: Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax
X. Fang, E. Nevo, Li-Juan Han, E. Levanon +49 more
2015Nature Communications530 citations Open access
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The future of livestock breeding: genomic selection for efficiency, reduced emissions intensity, and adaptation.
B. Hayes, H. Lewin, M. Goddard
2013Trends in Genetics372 citations
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A comparative genomics multitool for scientific discovery and conservation
D. Genereux, Aitor Serres, J. Armstrong, Jeremy Johnson +44 more
2020Nature347 citations Open access
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The Earth BioGenome Project 2020: Starting the clock
H. Lewin, S. Richards, Erez Lieberman Aiden, M. Allende +81 more
2022Proceedings of the National Academy of Sciences of the United States of America285 citations Open access
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Extensive polymorphism of the BoLA-DRB3 gene distinguished by PCR-RFLP.
M. V. van Eijk, J. A. Stewart-Haynes, H. Lewin
2009Animal Genetics285 citations
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Draft genome sequence of the Tibetan antelope
R. Ge, Q. Cai, Yong-Yi Shen, A. Şan +37 more
2013Nature Communications272 citations Open access
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Rewirable gene regulatory networks in the preimplantation embryonic development of three mammalian species.
Dan Xie, Chieh-Chun Chen, L. Ptaszek, Shu Xiao +6 more
2010Genome Research242 citations Open access
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Endometrium as an early sensor of in vitro embryo manipulation technologies
N. Mansouri-Attia, O. Sandra, J. Aubert, S. Degrelle +9 more
2009Proceedings of the National Academy of Sciences of the United States of America242 citations Open access
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Evolutionary constraint and innovation across hundreds of placental mammals
M. Christmas, Irene M. Kaplow, D. Genereux, Michael X. Dong +72 more
2023Science215 citations Open access
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Population genomics of the critically endangered kākāpō
Nicolas Dussex, T. van der Valk, Hernán E. Morales, C. Wheat +36 more
2021Cell Genomics214 citations Open access
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Comparative epigenomic annotation of regulatory DNA
Shu Xiao, Dan Xie, Xiao-Yi Cao, Pengfei Yu +8 more
2012Cell211 citations Open access
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Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories.
D. Larkin, Greg Pape, Ravikiran Donthu, L. Auvil +2 more
2009Genome Research197 citations Open access
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Every genome sequence needs a good map.
H. Lewin, D. Larkin, J. Pontius, S. O'Brien
2009Genome Research162 citations Open access
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A panel of polymorphic bovine, ovine and caprine microsatellite markers.
S. Kemp, O. Hishida, J. Wambugu, A. Rink +6 more
2009Animal Genetics158 citations
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A genomic timescale for placental mammal evolution
Nicole M. Foley, Victor C. Mason, Andrew J. Harris, K. Bredemeyer +8 more
2022bioRxiv149 citations Open access
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Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax
Xiao-Dong Fang, E. Nevo, Li-Juan Han, E. Levanon +49 more
2014Nature Communications144 citations Open access
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Platypus and echidna genomes reveal mammalian biology and evolution
Yang Zhou, Linda Shearwin-Whyatt, Jing Li, Z. Song +38 more
2021Nature140 citations Open access
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Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation Cycle
M. Bionaz, K. Periasamy, S. Rodriguez-Zas, R. Everts +3 more
2012PLoS ONE131 citations Open access
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Reference-assisted chromosome assembly
Jaebum Kim, D. Larkin, Q. Cai, Asan +7 more
2013Proceedings of the National Academy of Sciences of the United States of America127 citations Open access
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Reconstruction and evolutionary history of eutherian chromosomes
Jaebum Kim, Marta Farré, L. Auvil, Boris Capitanu +3 more
2017Proceedings of the National Academy of Sciences of the United States of America107 citations Open access
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Chromosome Segregation Is Biased by Kinetochore Size
Danica Drpic, Ana C. Almeida, P. Aguiar, Fioranna Renda +5 more
2018Current Biology105 citations Open access
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Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors
I. Macleod, D. Larkin, H. Lewin, B. Hayes +1 more
2013Molecular biology and evolution105 citations Open access
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Standards recommendations for the Earth BioGenome Project
M. Lawniczak, R. Durbin, P. Flicek, K. Lindblad-Toh +41 more
2022Proceedings of the National Academy of Sciences of the United States of America89 citations Open access
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Identification of a nonsense mutation in APAF1 that is likely causal for a decrease in reproductive efficiency in Holstein dairy cattle.
H. Adams, T. Sonstegard, P. VanRaden, D. Null +3 more
2016Journal of Dairy Science85 citations Open access
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Whole-genome resequencing of two elite sires for the detection of haplotypes under selection in dairy cattle
D. Larkin, H. Daetwyler, Alvaro G. Hernandez, C. Wright +13 more
2012Proceedings of the National Academy of Sciences of the United States of America84 citations Open access
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Why sequence all eukaryotes?
M. Blaxter, J. Archibald, Anna K. Childers, J. Coddington +23 more
2022Proceedings of the National Academy of Sciences of the United States of America80 citations Open access
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Evolution of the ancestral mammalian karyotype and syntenic regions
Joana Damas, Marco Corbo, Jaebum Kim, Jason Turner-Maier +21 more
2022Proceedings of the National Academy of Sciences of the United States of America76 citations Open access
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An atlas of regulatory elements in chicken: A resource for chicken genetics and genomics
Z. Pan, Ying Wang, Mingshan Wang, Yu-Zhe Wang +21 more
2023Science Advances75 citations Open access
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Diversity and population-genetic properties of copy number variations and multicopy genes in cattle
D. Bickhart, Lingyang Xu, J. Hutchison, J. Cole +10 more
2016DNA Research74 citations Open access
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A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert
Marta Farré, Qi-Ye Li, Yang Zhou, Joana Damas +7 more
2019GigaScience72 citations Open access
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Unlocking the bovine genome
R. Tellam, Danielle G. Lemay, C. P. Van Tassell, H. Lewin +2 more
2009BMC Genomics65 citations Open access
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Africa: sequence 100,000 species to safeguard biodiversity
T. E. Ebenezer, A. Muigai, S. Nouala, B. Badaoui +17 more
2022Nature59 citations Open access
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Vertebrate Chromosome Evolution.
Joana Damas, Marco Corbo, H. Lewin
2020Annual Review of Animal Biosciences58 citations Open access
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Systems Biology Analysis of Gene Expression during In Vivo Mycobacterium avium paratuberculosis Enteric Colonization Reveals Role for Immune Tolerance
S. Khare, S. Lawhon, Kenneth L. Drake, Jairo E. S. Nunes +8 more
2012PLoS ONE57 citations Open access
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Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks
Marta Farré, Jaebum Kim, Anastasia A. Proskuryakova, Yang Zhang +16 more
2019Genome Research49 citations Open access
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Massive dysregulation of genes involved in cell signaling and placental development in cloned cattle conceptus and maternal endometrium
F. Biase, C. Rabel, M. Guillomot, I. Hue +14 more
2016Proceedings of the National Academy of Sciences of the United States of America49 citations Open access
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Mammary gene expression profiles during an intramammary challenge reveal potential mechanisms linking negative energy balance with impaired immune response.
K. Moyes, J. Drackley, D. Morin, S. Rodriguez-Zas +3 more
2010Physiological Genomics48 citations Open access
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Feed restriction, but not l-carnitine infusion, alters the liver transcriptome by inhibiting sterol synthesis and mitochondrial oxidative phosphorylation and increasing gluconeogenesis in mid-lactation dairy cows.
H. Akbar, M. Bionaz, D. Carlson, S. Rodriguez-Zas +4 more
2013Journal of Dairy Science47 citations Open access
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Role of SPI-1 Secreted Effectors in Acute Bovine Response to Salmonella enterica Serovar Typhimurium: A Systems Biology Analysis Approach
S. Lawhon, S. Khare, C. Rossetti, R. Everts +11 more
2011PLoS ONE45 citations Open access
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Enhancing the Role of Veterinary Vaccines Reducing Zoonotic Diseases of Humans: Linking Systems Biology with Vaccine Development
L. G. Adams, Sangeeta Khare, S. Lawhon, C. Rossetti +6 more
2011Vaccine39 citations Open access
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Messenger RNAs in metaphase II oocytes correlate with successful embryo development to the blastocyst stage
F. Biase, R. Everts, Rosane Oliveira, W. K. F. Santos-Biase +5 more
2012Zygote (Cambridge. Print)34 citations
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Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development
P. Piantoni, M. Bionaz, D. Graugnard, K. Daniels +6 more
2010BMC Genomics34 citations Open access
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A small set of extra-embryonic genes defines a new landmark for bovine embryo staging.
S. Degrelle, K. Cao, Y. Heyman, R. Everts +8 more
2011Reproduction33 citations Open access
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Uncoupled Embryonic and Extra-Embryonic Tissues Compromise Blastocyst Development after Somatic Cell Nuclear Transfer
S. Degrelle, F. Jaffrézic, É. Campion, K. Cao +13 more
2012PLoS ONE31 citations Open access
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Comparative analysis of the early transcriptome of Brucella abortus - infected monocyte-derived macrophages from cattle naturally resistant or susceptible to brucellosis
C. Rossetti, C. Galindo, R. Everts, H. Lewin +2 more
2010Research in Veterinary Science30 citations Open access
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Precision nomenclature for the new genomics
H. Lewin, J. Marshall Graves, O. Ryder, A. Graphodatsky +1 more
2019GigaScience29 citations Open access
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