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O. Fedrigo · SciRah

Researcher profile · Semantic Scholar

O. Fedrigo

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O. Fedrigo — researcher profile on SciRah

h-index: 34
Works: 111
Citations: 9,858

Most-cited papers

Towards complete and error-free genome assemblies of all vertebrate species
A. Rhie, Shane A. McCarthy, O. Fedrigo, Joana Damas +123 more
2020Nature2,918 citations Open access
Semantic Scholar
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs
G. Formenti, L. Abueg, Angelo Brajuka, Nadolina Brajuka +4 more
2022bioRxiv1,233 citations Open access
Semantic Scholar
A draft human pangenome reference
Wen-Wei Liao, Mobin Asri, Jana Ebler, D. Doerr +115 more
2022bioRxiv983 citations Open access
Semantic Scholar
Haplotype-resolved assembly of diploid genomes without parental data
Hao-Yu Cheng, E. Jarvis, O. Fedrigo, K. Koepfli +3 more
2022Nature Biotechnology966 citations Open access
Semantic Scholar
Six reference-quality genomes reveal evolution of bat adaptations
David Jebb, Zi-Xia Huang, M. Pippel, Graham M. Hughes +25 more
2020Nature314 citations Open access
Semantic Scholar
The Earth BioGenome Project 2020: Starting the clock
H. Lewin, S. Richards, Erez Lieberman Aiden, M. Allende +81 more
2022Proceedings of the National Academy of Sciences of the United States of America285 citations Open access
Semantic Scholar
Population genomics of the critically endangered kākāpō
Nicolas Dussex, T. van der Valk, Hernán E. Morales, C. Wheat +36 more
2021Cell Genomics214 citations Open access
Semantic Scholar
A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
Anoushka Joglekar, A. Prjibelski, A. Mahfouz, Paul G Collier +26 more
2021Nature Communications188 citations Open access
Semantic Scholar
Semi-automated assembly of high-quality diploid human reference genomes
E. Jarvis, G. Formenti, A. Rhie, A. Guarracino +79 more
2022Nature185 citations Open access
Semantic Scholar
Platypus and echidna genomes reveal mammalian biology and evolution
Yang Zhou, Linda Shearwin-Whyatt, Jing Li, Z. Song +38 more
2021Nature140 citations Open access
Semantic Scholar
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
S. Hardwick, Wengian Hu, Anoushka Joglekar, Li Fan +26 more
2022Nature Biotechnology118 citations Open access
Semantic Scholar
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
G. Formenti, A. Rhie, Jennifer R. Balacco, B. Haase +37 more
2021Genome Biology116 citations Open access
Semantic Scholar
Recombination between heterologous human acrocentric chromosomes
A. Guarracino, S. Buonaiuto, L. G. de Lima, Tamara A. Potapova +119 more
2023bioRxiv112 citations Open access
Semantic Scholar
Reference genome and demographic history of the most endangered marine mammal, the vaquita
P. Morin, F. Archer, C. Avila, Jennifer R. Balacco +30 more
2020bioRxiv111 citations Open access
Semantic Scholar
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C
Z. Kronenberg, A. Rhie, S. Koren, G. Concepcion +17 more
2021Nature Communications104 citations Open access
Semantic Scholar
Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease
Thomas A. Ray, K. Cochran, Christopher Kozlowski, Jing-Jing Wang +16 more
2020Nature Communications102 citations Open access
Semantic Scholar
Single-cell long-read sequencing-based mapping reveals specialized splicing patterns in developing and adult mouse and human brain
Anoushka Joglekar, Wengian Hu, Bei Zhang, Oleksandr Narykov +11 more
2024Nature Neuroscience99 citations Open access
Semantic Scholar
Genomic signature of Fanconi anemia DNA repair pathway deficiency in cancer
A. L. Webster, M. Sanders, Krupa B. Patel, R. Dietrich +45 more
2022Nature75 citations Open access
Semantic Scholar
Evolutionary and biomedical insights from a marmoset diploid genome assembly
Chentao Yang, Yang Zhou, Stephanie R. Marcus, G. Formenti +29 more
2021Nature63 citations Open access
Semantic Scholar
Reference genomes for conservation
S. Paez, R. Kraus, B. Shapiro, M. Gilbert +13 more
2022Science58 citations
Semantic Scholar
False gene and chromosome losses in genome assemblies caused by GC content variation and repeats
Juwan Kim, Chul Lee, Byung June Ko, DongAhn Yoo +15 more
2022Genome Biology52 citations Open access
Semantic Scholar
A pangenome graph reference of 30 chicken genomes allows genotyping of large and complex structural variants
E. Rice, A. Alberdi, James M. Alfieri, G. Athrey +18 more
2023BMC Biology50 citations Open access
Semantic Scholar
Fourth Report on Chicken Genes and Chromosomes 2022
Jacqueline Smith, James M. Alfieri, N. Anthony, Peter Arensburger +120 more
2023Cytogenetic and Genome Research49 citations Open access
Semantic Scholar
Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories
B. Bentley, Tomás Carrasco-Valenzuela, E. Ramos, Harvinder Pawar +43 more
2023Proceedings of the National Academy of Sciences of the United States of America47 citations Open access
Semantic Scholar
Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing
Hollis A. Dahn, J. Mountcastle, Jennifer R. Balacco, Sylke Winkler +18 more
2021bioRxiv44 citations Open access
Semantic Scholar
An improved germline genome assembly for the sea lamprey Petromyzon marinus illuminates the evolution of germline-specific chromosomes
N. Timoshevskaya, Kaan I. Esşkut, Vladimir A. Timoshevskiy, Sofia M. C. Robb +21 more
2023Cell Reports41 citations Open access
Semantic Scholar
Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy
D. Larivière, L. Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba +33 more
2023bioRxiv40 citations Open access
Semantic Scholar
Low mutation rate in epaulette sharks is consistent with a slow rate of evolution in sharks
Ashley T. Sendell-Price, F. Tulenko, Mats E. Pettersson, Du Kang +17 more
2023Nature Communications36 citations Open access
Semantic Scholar
The genome sequence of the brown trout, Salmo trutta Linnaeus 1758
T. Hansen, P. Fjelldal, S. Lien, Michelle Smith +20 more
2021Wellcome Open Research34 citations Open access
Semantic Scholar
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy
Delphine Larivière, L. Abueg, Nadolina Brajuka, Cristóbal Gallardo-Alba +37 more
2024Nature Biotechnology33 citations Open access
Semantic Scholar
As above, so below: Whole transcriptome profiling demonstrates strong molecular similarities between avian dorsal and ventral pallial subdivisions
Gregory L. Gedman, B. Haase, Gillian Durieux, Matthew T. Biegler +2 more
2021The Journal of comparative neurology28 citations Open access
Semantic Scholar
A region of suppressed recombination misleads neoavian phylogenomics
S. Mirarab, Iker Rivas-González, Shaohong Feng, Josefin Stiller +15 more
2024Proceedings of the National Academy of Sciences of the United States of America27 citations Open access
Semantic Scholar
A chromosome-level reference genome and pangenome for barn swallow population genomics
Simona Secomandi, G. Gallo, Marcella Sozzoni, A. Iannucci +35 more
2023Cell Reports26 citations Open access
Semantic Scholar
Robust haplotype-resolved assembly of diploid individuals without parental data
Hao-Yu Cheng, E. Jarvis, O. Fedrigo, K. Koepfli +3 more
202126 citations
Semantic Scholar
Persistent Genomic Erosion in Whooping Cranes Despite Demographic Recovery
Claudia Fontsere, Samuel A. Speak, Andrew J. Caven, Juan Antonio Rodríguez +16 more
2025Molecular Ecology22 citations Open access
Semantic Scholar
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography
Yury V Bukhman, Phillip A. Morin, Susanne Meyer, Li-Fang Chu +32 more
2024Molecular biology and evolution21 citations Open access
Semantic Scholar
A genomic basis of vocal rhythm in birds
M. Sebastianelli, Sifiso M. Lukhele, Simona Secomandi, Stacey G. de Souza +16 more
2024Nature Communications21 citations Open access
Semantic Scholar
Evolution and genetic architecture of sex-limited polymorphism in cuckoos
Justin Merondun, Cristiana I. Marques, P. Andrade, S. Meshcheryagina +30 more
2024Science Advances19 citations Open access
Semantic Scholar
False gene and chromosome losses affected by assembly and sequence errors
Juwan Kim, Chul Lee, Byung June Ko, DongAhn Yoo +15 more
2021bioRxiv19 citations Open access
Semantic Scholar
Optical genome mapping identifies rare structural variations as predisposition factors associated with severe COVID-19
N. Sahajpal, Chi-Yu Jill Lai, A. Hastie, A. Mondal +22 more
2022iScience18 citations Open access
Semantic Scholar
The swan genome and transcriptome, it is not all black and white
A. Karawita, Yuanyuan Cheng, K. Chew, Arjun Challgula +42 more
2022bioRxiv17 citations Open access
Semantic Scholar
The Vertebrate Genomes Project Phase I: A global reference genome resource
G. Formenti, Dominic E. Absolon, L. Abueg, Francine Ackerman +166 more
2026bioRxiv16 citations Open access
Semantic Scholar
Distinct patterns of genetic variation at low-recombining genomic regions represent haplotype structure.
Jun Ishigohoka, Karen Bascón-Cardozo, Andrea Bours, J. Fuss +12 more
2024Evolution; international journal of organic evolution16 citations Open access
Semantic Scholar
Hi-C scaffolded short- and long-read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution
C. Peart, C. Williams, S. Pophaly, Benjamin A. Neely +22 more
2021Molecular Ecology Resources16 citations Open access
Semantic Scholar
A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes
H. Toh, Chentao Yang, G. Formenti, K. Raja +25 more
2021bioRxiv15 citations Open access
Semantic Scholar
The admixed brushtail possum genome reveals invasion history in New Zealand and novel imprinted genes
D. Bond, O. Ortega-Recalde, Melanie K Laird, Takashi Hayakawa +22 more
2023Nature Communications13 citations Open access
Semantic Scholar
A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei.
Maëva Gabrielli, A. Benazzo, Roberto Biello, L. Ancona +15 more
2023Journal of Heredity12 citations Open access
Semantic Scholar
Fanconi Anemia Pathway Deficiency Drives Copy Number Variation in Squamous Cell Carcinomas
A. L. Webster, M. Sanders, K. Patel, R. Dietrich +40 more
2021bioRxiv11 citations Open access
Semantic Scholar
Sex-specific changes in autosomal methylation rate in ageing common terns
Britta S. Meyer, M. Moiron, Calvinna Caswara, W. Chow +10 more
2023Frontiers in Ecology and Evolution10 citations Open access
Semantic Scholar
Single-cell long-read mRNA isoform regulation is pervasive across mammalian brain regions, cell types, and development
Anoushka Joglekar, Wengian Hu, Bei Zhang, Oleksandr Narykov +10 more
2023bioRxiv10 citations Open access
Semantic Scholar

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