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Danielle G. Lemay · SciRah

Researcher profile · Semantic Scholar

Danielle G. Lemay

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Danielle G. Lemay — researcher profile on SciRah

h-index: 32
Works: 161
Citations: 5,736

Most-cited papers

Pilot study of probiotic/colostrum supplementation on gut function in children with autism and gastrointestinal symptoms
M. Sanctuary, Jennifer N Kain, Shin-Yu Chen, K. Kalanetra +10 more
2019PLoS ONE203 citations Open access
Semantic Scholar
The fecal resistome of dairy cattle is associated with diet during nursing
Jinxin Liu, Diana H. Taft, María X. Maldonado-Gómez, Daisy Johnson +4 more
2019Nature Communications173 citations Open access
Semantic Scholar
SAMSA2: a standalone metatranscriptome analysis pipeline
Samuel T. Westreich, M. L. Treiber, D. Mills, I. Korf +1 more
2017BMC Bioinformatics125 citations Open access
Semantic Scholar
Association of Diet and Antimicrobial Resistance in Healthy U.S. Adults
A. Oliver, Zheng-Yao Xue, Yirui T. Villanueva, B. Durbin-Johnson +9 more
2022mBio91 citations Open access
Semantic Scholar
Reservoirs of antimicrobial resistance genes in retail raw milk
Jinxin Liu, Yuan-Ting Zhu, M. Jay-Russell, Danielle G. Lemay +1 more
2020Microbiome88 citations Open access
Semantic Scholar
Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization
Samuel T. Westreich, Amir Ardeshir, Z. Alkan, Mary E. Kable +2 more
2019Microbiome41 citations Open access
Semantic Scholar
Diet, Microbiome, and Inflammation Predictors of Fecal and Plasma Short-Chain Fatty Acids in Humans
Andrew Oliver, Zeynep Alkan, C. Stephensen, John W. Newman +2 more
2024Journal of NutriLife40 citations Open access
Semantic Scholar
Creation of a milk oligosaccharide database, MilkOligoDB, reveals common structural motifs and extensive diversity across mammals
Sierra D. Durham, Zhe Wei, Danielle G. Lemay, Matthew C. Lange +1 more
2023Scientific Reports36 citations Open access
Semantic Scholar
Tree-based Analysis of Dietary Diversity Captures Associations between Fiber Intake and Gut Microbiota Composition in a Healthy U.S. Adult Cohort.
Mary E. Kable, Elizabeth L Chin, David H. Storms, Danielle G. Lemay +1 more
2021Journal of NutriLife36 citations Open access
Semantic Scholar
Association of Lactase Persistence Genotypes (rs4988235) and Ethnicity with Dairy Intake in a Healthy U.S. Population
Elizabeth L Chin, Li-Ping Huang, Yasmine Y Bouzid, C. Kirschke +7 more
2019Nutrients31 citations Open access
Semantic Scholar
Nutrient Estimation from 24-Hour Food Recalls Using Machine Learning and Database Mapping: A Case Study with Lactose
Elizabeth L Chin, Gabriel Simmons, Yasmine Y Bouzid, Annie Kan +3 more
2019Nutrients30 citations Open access
Semantic Scholar
Dietary Intake of Monosaccharides from Foods is Associated with Characteristics of the Gut Microbiota and Gastrointestinal Inflammation in Healthy US Adults.
Jules A. Larke, Nikita P. Bacalzo, J. Castillo, Garret Couture +7 more
2022Journal of NutriLife29 citations Open access
Semantic Scholar
Technician-Scored Stool Consistency Spans the Full Range of the Bristol Scale in a Healthy US Population and Differs by Diet and Chronic Stress Load.
Danielle G. Lemay, Lacey M. Baldiviez, Elizabeth L Chin, Sarah S Spearman +5 more
2021Journal of NutriLife28 citations Open access
Semantic Scholar
Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes
M. L. Treiber, Diana H. Taft, I. Korf, D. Mills +1 more
2019BMC Bioinformatics28 citations Open access
Semantic Scholar
Effect of Manual Data Cleaning on Nutrient Intakes Using the Automated Self-Administered 24-Hour Dietary Assessment Tool (ASA24).
Yasmine Y Bouzid, J. Arsenault, Ellen L Bonnel, Eduardo Cervantes +4 more
2021Current Developments in Nutrition25 citations Open access
Semantic Scholar
The Development of the Davis Food Glycopedia—A Glycan Encyclopedia of Food
J. Castillo, Garret Couture, Nikita P. Bacalzo, Ye Chen +11 more
2022Nutrients22 citations Open access
Semantic Scholar
Infant age inversely correlates with gut carriage of resistance genes, reflecting modifications in microbial carbohydrate metabolism during early life
Xin-Ming Xu, Qingying Feng, Tao Zhang, Yunlong Gao +14 more
2024iMeta21 citations Open access
Semantic Scholar
Tolerability and safety of the intake of bovine milk oligosaccharides extracted from cheese whey in healthy human adults
J. Smilowitz, Danielle G. Lemay, K. Kalanetra, Elizabeth L Chin +6 more
2017Journal of Nutritional Science19 citations Open access
Semantic Scholar
Special report: AI Institute for next generation food systems (AIFS)
I. Tagkopoulos, Stephen F. Brown, Xin Liu, Qing Zhao +9 more
2022Computers and Electronics in Agriculture18 citations Open access
Semantic Scholar
Multimodal AI to Improve Agriculture
C. Parr, Danielle G. Lemay, Christopher L. Owen, M. J. Woodward-Greene +1 more
2021IT Professional18 citations
Semantic Scholar
TaxaHFE: A machine learning approach to collapse microbiome datasets using taxonomic structure
A. Oliver, M. Kay, Danielle G. Lemay
2023bioRxiv15 citations Open access
Semantic Scholar
Fecal metatranscriptomics and glycomics suggest that bovine milk oligosaccharides are fully utilized by healthy adults
Samuel T. Westreich, J. Salcedo, B. Durbin-Johnson, J. Smilowitz +4 more
2020Journal of Nutritional Biochemistry14 citations Open access
Semantic Scholar
Temporal changes in postprandial blood transcriptomes reveal subject-specific pattern of expression of innate immunity genes after a high-fat meal.
Danielle G. Lemay, Shurong Huang, Li-Ping Huang, Z. Alkan +4 more
2019Journal of Nutritional Biochemistry14 citations Open access
Semantic Scholar
Fine-Scale Dietary Polyphenol Intake Is Associated with Systemic and Gastrointestinal Inflammation in Healthy Adults
S. Wilson, Andrew Oliver, Jules A. Larke, José J Naveja +4 more
2024Journal of NutriLife13 citations Open access
Semantic Scholar
Lower Diet Quality Associated with Subclinical Gastrointestinal Inflammation in Healthy United States Adults
Yasmine Y Bouzid, S. Wilson, Zeynep Alkan, C. Stephensen +1 more
2024Journal of NutriLife13 citations Open access
Semantic Scholar
Surveying Nutrient Assessment with Photographs of Meals (SNAPMe): A Benchmark Dataset of Food Photos for Dietary Assessment
Jules A. Larke, Elizabeth L Chin, Yasmine Y Bouzid, Tu Nguyen +5 more
2023Nutrients12 citations Open access
Semantic Scholar
Harnessing AI to Transform Agriculture and Inform Agricultural Research
D. Peters, Adam R. Rivers, J. Hatfield, Danielle G. Lemay +2 more
2020IT Professional12 citations
Semantic Scholar
The collaborative effect of scientific meetings: A study of the International Milk Genomics Consortium
Eric Kwok, M. Porter, I. Korf, Gonca Pasin +2 more
2018PLoS ONE9 citations Open access
Semantic Scholar
Association of Estimated Daily Lactose Consumption, Lactase Persistence Genotype (rs4988235), and Gut Microbiota in Healthy U.S. Adults.
Mary E. Kable, Elizabeth L Chin, Li-Ping Huang, C. Stephensen +1 more
2023Journal of NutriLife8 citations Open access
Semantic Scholar
The AIFS Institute: Building a better food system through AI
Ilias Tagkopoulos, J. Earles, Danielle G. Lemay, Xin Liu +4 more
2024The AI Magazine7 citations Open access
Semantic Scholar
Machine Learning Identifies Stool pH as Predictor of Bone Mineral Density in Healthy Multi-Ethnic U.S. Adults.
Elizabeth L Chin, M. Van Loan, Sarah S Spearman, Ellen L Bonnel +3 more
2021Journal of NutriLife7 citations Open access
Semantic Scholar
The Transcriptome of Estrogen‐Independent Mammary Growth in Female Mice Reveals That Not All Mammary Glands Are Created Equally
Grace E. Berryhill, Danielle G. Lemay, J. Trott, L. Aimo +2 more
2017Endocrinology6 citations Open access
Semantic Scholar
Development of a comprehensive food glycomic database and its application: Associations between dietary carbohydrates and insulin resistance.
Christopher Suarez, S. Cheang, Jules A. Larke, Jiani Jiang +10 more
2025Food Chemistry5 citations Open access
Semantic Scholar
Associations among Milk Microbiota, Milk Fatty Acids, Milk Glycans, and Inflammation from Lactating Holstein Cows
Laurynne C. Coates, Sierra D. Durham, D. Storms, Andrew D Magnuson +10 more
2023Microbiology spectrum5 citations Open access
Semantic Scholar
A Low-Starch and High-Fiber Diet Intervention Impacts the Microbial Community of Raw Bovine Milk.
Laurynne C. Coates, David H. Storms, J. Finley, N. Fukagawa +3 more
2022Current Developments in Nutrition4 citations Open access
Semantic Scholar
No Associations between Dairy Intake and Markers of Gastrointestinal Inflammation in Healthy Adult Cohort
Yasmine Y Bouzid, Elizabeth L Chin, Sarah S Spearman, Z. Alkan +2 more
2021Nutrients4 citations Open access
Semantic Scholar
Unique transcriptomic changes underlie hormonal interactions during mammary histomorphogenesis in female pigs.
J. Trott, Anke Schennink, K. C. Horigan, Danielle G. Lemay +4 more
2021Endocrinology4 citations Open access
Semantic Scholar
Association of the Lactase Persistence Haplotype Block With Disease Risk in Populations of European Descent
Shannon E. K. Joslin, B. Durbin-Johnson, Monica Britton, M. Settles +2 more
2020Frontiers in Genetics4 citations Open access
Semantic Scholar
Low Intake of Dietary Fiber Is Associated With Gastrointestinal Inflammation in Healthy U.S. Adults
Yasmine Bouzid, Z. Alkan, C. Stephensen, Danielle G. Lemay
2022Current Developments in Nutrition3 citations Open access
Semantic Scholar
Evaluation of Large Language Models for Mapping Dietary Data to Food Databases.
Danielle G. Lemay, Michael P Strohmeier, R. Stoker, Jules A. Larke +1 more
2026Journal of NutriLife2 citations Open access
Semantic Scholar
Gut Microbe Fermentation of Moringa oleifera Leaf Extract Increases Measurable Polyphenols and Improves Barrier Function in a Cell Culture Model
Mary E. Kable, David H. Storms, Zeynep Alkan, Maneesha Muriki +3 more
2025MicrobiologyOpen2 citations Open access
Semantic Scholar
Gut microbiome genes involved in plant and mucin breakdown correlate with diet and gastrointestinal inflammation in healthy US adults.
Sarah E Blecksmith, Andrew Oliver, Zeynep Alkan, Danielle G. Lemay
2025Journal of NutriLife2 citations Open access
Semantic Scholar
Fecal microbiomes from healthy adult consumers of fruits and vegetables exhibit fiber- and donor-specific fermentation: “5 a day” is not enough
Sarah E Blecksmith, K. Kalanetra, C. Weng, Christopher Suarez +10 more
2025Food & Function2 citations Open access
Semantic Scholar
Association of Diet and Antimicrobial Resistance in Healthy US Adults
Andrew Oliver, Zheng-Yao Xue, Yi-Rui Tang, Blythe Durbin-Johnson +9 more
2022Current Developments in Nutrition2 citations Open access
Semantic Scholar
Association between dietary polyphenol intake and polyphenol-utilizing bacteria in healthy adults.
S. Wilson, Andrew Oliver, Zeynep Alkan, Bhimu Patil +2 more
2026Food & Function1 citations
Semantic Scholar
Stool microbial composition is associated with recent and future diarrhea and fever events in breastfed Danish infants
Laurynne C. Coates, David H. Storms, Sarah S Spearman, Setareh Shahab-Ferdows +7 more
2026mSystems1 citations Open access
Semantic Scholar
Machine Learning with Ingredient-Level Food Trees Reveals Contributors to Systemic Inflammation Among Adults in the National Health and Nutrition Examination Survey, 2001-2010 and 2015-2018.
Jules A. Larke, Danielle G. Lemay
2025Journal of the Academy of Nutrition and Dietetics1 citations Open access
Semantic Scholar
Association Between Dietary Polyphenol Intake and Polyphenol-Utilizing Bacteria in Healthy Adults
S. Wilson, Andrew Oliver, Zeynep Alkan, Bhimu Patil +3 more
2025Current Developments in Nutrition1 citations Open access
Semantic Scholar
Association of lactose intake and lactase persistence genotype with microbial taxa and function in healthy multi-ethnic U.S. adults.
Yi-Rui Tang, Andrew Oliver, Zeynep Alkan, Ian Korf +3 more
2025Food & Function1 citations Open access
Semantic Scholar
A Dietary Glycan Encyclopedia of Food: Unveiling Molecular Structures via LC-MS for Precision Nutrition Initiatives
Christopher Suarez, Shawn Ehlers-Cheang, Jiani Jiang, Jules A. Larke +5 more
2024Current Developments in Nutrition1 citations Open access
Semantic Scholar

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