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L. Bramer · SciRah

Researcher profile · Semantic Scholar

L. Bramer

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L. Bramer — researcher profile on SciRah

h-index: 21
Works: 113
Citations: 2,315

Most-cited papers

Proteogenomic and metabolomic characterization of human glioblastoma
Liang-Bo Wang, Alla Karpova, M. Gritsenko, J. Kyle +84 more
2021Cancer Cell578 citations Open access
Semantic Scholar
Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution
P. Piehowski, Ying Zhu, L. Bramer, K. Stratton +10 more
2020Nature Communications215 citations Open access
Semantic Scholar
Missing data in multi-omics integration: Recent advances through artificial intelligence
J. Flores, Daniel M Claborne, Zachary D. Weller, B. Webb-Robertson +2 more
2023Frontiers in Artificial Intelligence157 citations Open access
Semantic Scholar
A global lipid map defines a network essential for Zika virus replication
H. Leier, Jules B. Weinstein, J. Kyle, Joon-Yong Lee +11 more
2020Nature Communications93 citations Open access
Semantic Scholar
Putting Humpty Dumpty back together again: What does protein quantification mean in bottom-up proteomics?
D. Plubell, L. Käll, B. Webb-Robertson, L. Bramer +6 more
2022Journal of Proteome Research77 citations Open access
Semantic Scholar
Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting
J. Fulcher, L. M. Markillie, H. Mitchell, Sarah M. Williams +11 more
2023bioRxiv71 citations Open access
Semantic Scholar
Effects of ingested nanocellulose on intestinal microbiota and homeostasis in Wistar Han rats
S. Khare, G. Deloid, R. Molina, K. Gokulan +10 more
2020NanoImpact70 citations Open access
Semantic Scholar
Multi-scale signaling and tumor evolution in high-grade gliomas
Jingxian Liu, Song Cao, K. Imbach, M. Gritsenko +70 more
2024Cancer Cell66 citations Open access
Semantic Scholar
pmartR: Quality Control and Statistics for Mass Spectrometry-Based Biological Data
K. Stratton, B. Webb-Robertson, L. McCue, B. Stanfill +7 more
2019Journal of Proteome Research66 citations Open access
Semantic Scholar
A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants
Scotland Farley, J. Kyle, H. Leier, L. Bramer +6 more
2022Nature Communications55 citations Open access
Semantic Scholar
ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data
L. Bramer, Amanda M. White, K. Stratton, Allison M. Thompson +3 more
2020PLoS Comput. Biol.53 citations Open access
Semantic Scholar
Rapid remodeling of the soil lipidome in response to a drying-rewetting event
Sneha P. Couvillion, Robert Danczak, D. Naylor, Montana L Smith +14 more
2023Microbiome41 citations Open access
Semantic Scholar
A Review of Imputation Strategies for Isobaric Labeling-Based Shotgun Proteomics
L. Bramer, Jan Irvahn, P. Piehowski, K. Rodland +1 more
2020Journal of Proteome Research40 citations Open access
Semantic Scholar
Spatially Resolved Top-Down Proteomics of Tissue Sections Based on a Microfluidic Nanodroplet Sample Preparation Platform
Yen-Chen Liao, J. Fulcher, David J. Degnan, Sarah M. Williams +9 more
2023Molecular & Cellular Proteomics27 citations Open access
Semantic Scholar
Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers
B. Webb-Robertson, L. Bramer, B. Stanfill, S. Reehl +7 more
2020Journal of Diabetes27 citations Open access
Semantic Scholar
Mapping microhabitats of lignocellulose decomposition by a microbial consortium
Marija Veličković, Ruo-Nan Wu, Yu-Qian Gao, M. Thairu +20 more
2024Nature Chemical Biology25 citations Open access
Semantic Scholar
pmartR 2.0: A Quality Control, Visualization, and Statistics Pipeline for Multiple Omics Datatypes.
David J. Degnan, K. Stratton, Rachel E. Richardson, Daniel M Claborne +5 more
2023Journal of Proteome Research21 citations Open access
Semantic Scholar
Unveiling Molecular Signatures of Preeclampsia and Gestational Diabetes Mellitus with Multi-Omics and Innovative Cheminformatics Visualization Tools
Melanie T. Odenkirk, K. Stratton, M. Gritsenko, L. Bramer +10 more
2020Molecular Omics21 citations Open access
Semantic Scholar
Ceramide synthase 2 deletion decreases the infectivity of HIV-1
E. Barklis, Ayna Alfadhli, J. Kyle, L. Bramer +8 more
2021Journal of Biological Chemistry20 citations Open access
Semantic Scholar
Fate, cytotoxicity and cellular metabolomic impact of ingested nanoscale carbon dots using simulated digestion and a triculture small intestinal epithelial model
Xiao-Qiong Cao, Xiaoyong Pan, Sneha P. Couvillion, Tong Zhang +8 more
2021NanoImpact20 citations Open access
Semantic Scholar
Extending Classification Algorithms to Case-Control Studies
B. Stanfill, S. Reehl, L. Bramer, E. Nakayasu +4 more
2019Biomedical Engineering and Computational Biology20 citations Open access
Semantic Scholar
Advanced multi-modal mass spectrometry imaging reveals functional differences of placental villous compartments at microscale resolution
Marija Veličković, Leena Kadam, Joonhoon Kim, Kevin J. Zemaitis +12 more
2025Nature Communications19 citations Open access
Semantic Scholar
Spatial access and resource limitations control carbon mineralization in soils
Kaizad F. Patel, A. P. Smith, B. Bond-Lamberty, S. Fansler +4 more
2021Soil Biology and Biochemistry15 citations Open access
Semantic Scholar
Integration of Infant Metabolite, Genetic and Islet Autoimmunity Signatures to Predict Type 1 Diabetes by 6 Years of Age.
B. Webb-Robertson, E. Nakayasu, B. Frohnert, L. Bramer +7 more
2022Journal of Clinical Endocrinology and Metabolism14 citations Open access
Semantic Scholar
A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants
Scotland Farley, J. Kyle, H. Leier, L. Bramer +6 more
2022bioRxiv13 citations Open access
Semantic Scholar
Elucidating regulatory processes of intense physical activity by multi-omics analysis
E. Nakayasu, M. Gritsenko, Young-Mo Kim, J. Kyle +16 more
2023Military Medical Research12 citations Open access
Semantic Scholar
Impact of acute temperature and air pollution exposures on adult lung function: A panel study of asthmatics
R. Evoy, Laurel Kincl, D. Rohlman, L. Bramer +9 more
2022PLoS ONE12 citations Open access
Semantic Scholar
FT-ICR-MS Peak Intensity Normalization for Complex Mixture Analyses.
Allison M. Thompson, K. Stratton, L. Bramer, Nicole Zavoshy +1 more
2021Rapid Communications in Mass Spectrometry12 citations Open access
Semantic Scholar
Simulated Night-Shift Schedule Disrupts the Plasma Lipidome and Reveals Early Markers of Cardiovascular Disease Risk
J. Kyle, L. Bramer, Daniel M Claborne, K. Stratton +5 more
2022Nature and Science of Sleep11 citations Open access
Semantic Scholar
malbacR: A Package for Standardized Implementation of Batch Correction Methods for Omics Data.
Damon T. Leach, K. Stratton, Jan Irvahn, Rachel E. Richardson +2 more
2023Analytical Chemistry10 citations
Semantic Scholar
Soil Metabolomics Predict Microbial Taxa as Biomarkers of Moisture Status in Soils from a Tidal Wetland
Taniya RoyChowdhury, L. Bramer, Joseph Brown, Young-Mo Kim +5 more
2022Microorganisms10 citations Open access
Semantic Scholar
Spatial top-down proteomics for the functional characterization of human kidney
Kevin J. Zemaitis, J. Fulcher, Rashmi Kumar, David J. Degnan +10 more
2025Clinical Proteomics9 citations Open access
Semantic Scholar
Challenges and opportunities in state-of-the-art proteomics analysis for biomarker development from plasma extracellular vesicles
Panshak P. Dakup, Ivo Díaz Ludovico, Youngki You, Chaitra Rao +8 more
2025Proteomics9 citations Open access
Semantic Scholar
Modeling PAH Mixture Interactions in a Human In Vitro Organotypic Respiratory Model
Victoria C. Colvin, L. Bramer, Brianna N. Rivera, Jamie M. Pennington +2 more
2024International Journal of Molecular Sciences9 citations Open access
Semantic Scholar
Decrease in multiple complement proteins associated with development of islet autoimmunity and type 1 diabetes
B. Webb-Robertson, E. Nakayasu, F. Dong, K. Waugh +11 more
2023iScience9 citations Open access
Semantic Scholar
Evaluating Retention Index Score Assumptions to Refine GC-MS Metabolite Identification
David J. Degnan, L. Bramer, J. Flores, V. Paurus +2 more
2023bioRxiv9 citations Open access
Semantic Scholar
Development and Outcomes of Returning Polycyclic Aromatic Hydrocarbon Exposure Results in the Washington Heights, NYC Community
Kylie W Riley, Kimberly Burke, H. Dixon, Darrell Holmes +8 more
2024Environmental Health Insights8 citations Open access
Semantic Scholar
PMart Web Application: Marketplace for Interactive Analysis of Panomics Data.
K. Stratton, Daniel M Claborne, David J. Degnan, Rachel E. Richardson +4 more
2023Journal of Proteome Research8 citations
Semantic Scholar
From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions
Melanie T. Odenkirk, K. Stratton, L. Bramer, B. Webb-Robertson +4 more
2020Biomolecules8 citations Open access
Semantic Scholar
Statistically Driven Metabolite and Lipid Profiling of Patients from the Undiagnosed Diseases Network
B. Webb-Robertson, K. Stratton, J. Kyle, Young-Mo Kim +4 more
2019Analytical Chemistry8 citations Open access
Semantic Scholar
The human plasma lipidome response to exertional heat tolerance testing
I. Estevao, Josh B. Kazman, L. Bramer, C. Nicora +11 more
2024Lipids in Health and Disease7 citations Open access
Semantic Scholar
Preserved and variable spatial‐chemical changes of lipids across tomato leaves in response to central vein wounding reveals potential origin of linolenic acid in signal transduction cascade
Dušan Veličković, Rosalie K. Chu, C. Henkel, A. Nyhuis +10 more
2021Plant-Environment Interactions7 citations Open access
Semantic Scholar
Integrated lipidomic and proteomic profiling reveals metabolic network disruption by SARS-CoV-2 variants
Scotland E Farley, Jennifer E. Kyle, Helene Jahn, L. Bramer +7 more
2025Journal of Lipid Research6 citations Open access
Semantic Scholar
IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data.
David J. Degnan, Logan A. Lewis, L. Bramer, L. McCue +3 more
2024Journal of Proteome Research6 citations
Semantic Scholar
Spatial top-down proteomics for the functional characterization of human kidney
Kevin J. Zemaitis, J. Fulcher, Rashmi Kumar, David J. Degnan +10 more
2024bioRxiv6 citations Open access
Semantic Scholar
Discovery top-down proteomics in symbiotic soybean root nodules
Mo-Wei Zhou, J. Fulcher, Kevin J. Zemaitis, David J. Degnan +7 more
2022Frontiers in Analytical Science6 citations Open access
Semantic Scholar
PSpecteR: A User-Friendly and Interactive Application for Visualizing Top-Down and Bottom-Up Proteomics Data in R.
David J. Degnan, L. Bramer, Amanda M. White, Mo-Wei Zhou +2 more
2021Journal of Proteome Research6 citations Open access
Semantic Scholar
The impact of heat stress on the human plasma lipidome
I. Estevao, Josh B. Kazman, L. Bramer, C. Nicora +11 more
2024medRxiv5 citations Open access
Semantic Scholar
Protein-Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools.
David J. Degnan, Clayton W. Strauch, Moses Y Obiri, Erik Vonkaenel +5 more
2024Journal of Proteome Research5 citations
Semantic Scholar
Gaussian Mixture Modeling Extensions for Improved False Discovery Rate Estimation in GC-MS Metabolomics
J. Flores, L. Bramer, David J. Degnan, V. Paurus +2 more
2023bioRxiv5 citations Open access
Semantic Scholar

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