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T. Metz · SciRah

Researcher profile · Semantic Scholar

T. Metz

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T. Metz — researcher profile on SciRah

h-index: 72
Works: 287
Citations: 18K

Most-cited papers

Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice
G. Sharon, Nikki Jamie Cruz, Dae-Wook Kang, Michael Jeffrey Gandal +20 more
2019Cell1,054 citations Open access
Semantic Scholar
Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation
E. Nakayasu, M. Gritsenko, P. Piehowski, Yu-Qian Gao +12 more
2021Nature Protocols222 citations Open access
Semantic Scholar
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
J. Shaffer, L. Nothias, L. Thompson, Jon G. Sanders +47 more
2022Nature Microbiology172 citations Open access
Semantic Scholar
Auto-deconvolution and molecular networking of gas chromatography-mass spectrometry data
A. Aksenov, I. Laponogov, Zheng Zhang, S. Doran +66 more
2020Nature Biotechnology145 citations Open access
Semantic Scholar
CFM-ID 4.0 – a web server for accurate MS-based metabolite identification
Fei Wang, Dana Allen, Siyang Tian, Eponine Oler +4 more
2022Nucleic Acids Res.124 citations Open access
Semantic Scholar
SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes
R. Wojcik, Gabe Nagy, I. Attah, Ian K. Webb +11 more
2019Analytical Chemistry113 citations Open access
Semantic Scholar
An integrated multi-omics approach identifies the landscape of interferon-α-mediated responses of human pancreatic beta cells
M. Colli, M. Ramos-Rodríguez, E. Nakayasu, M. I. Alvelos +18 more
2020Nature Communications111 citations Open access
Semantic Scholar
Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples
K. Burnum-Johnson, Xue-Yun Zheng, J. Dodds, Jeremy R. Ash +8 more
2019Trends in Analytical Chemistry (TrAC)109 citations Open access
Semantic Scholar
The impact of pro-inflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabetes
M. Ramos-Rodríguez, Helena Raurell-Vila, M. Colli, M. I. Alvelos +14 more
2019Nature Genetics106 citations Open access
Semantic Scholar
Comprehensive Proteomics Analysis of Stressed Human Islets Identifies GDF15 as a Target for Type 1 Diabetes Intervention
E. Nakayasu, Farooq Syed, S. Tersey, M. Gritsenko +12 more
2020Cell Metabolism101 citations Open access
Semantic Scholar
A global lipid map defines a network essential for Zika virus replication
H. Leier, Jules B. Weinstein, J. Kyle, Joon-Yong Lee +11 more
2020Nature Communications93 citations Open access
Semantic Scholar
ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries
S. Colby, Dennis G. Thomas, Jamie R. Nuñez, D. Baxter +7 more
2019Analytical Chemistry93 citations Open access
Semantic Scholar
Genetic and metabolic links between the murine microbiome and memory
Jian-Hua Mao, Young-Mo Kim, Yan-Xia Zhou, De-Hong Hu +14 more
2020Microbiome88 citations Open access
Semantic Scholar
Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery
Z. Ilhan, J. DiBaise, Sydney E. Dautel, N. Isern +10 more
2020npj Biofilms and Microbiomes87 citations Open access
Semantic Scholar
Metaphenomic Responses of a Native Prairie Soil Microbiome to Moisture Perturbations
Taniya Roy Chowdhury, Joon-Yong Lee, E. Bottos, C. Brislawn +13 more
2019mSystems76 citations Open access
Semantic Scholar
Untargeted metabolomic profiling of Sphagnum fallax reveals novel antimicrobial metabolites
Jane D. Fudyma, Jamee Lyon, Roya AminiTabrizi, Hans Gieschen +9 more
2019Plant Direct76 citations Open access
Semantic Scholar
Quantum Chemistry Calculations for Metabolomics
R. Borges, S. Colby, S. Das, A. Edison +11 more
2021Chemical Reviews73 citations Open access
Semantic Scholar
Effects of ingested nanocellulose on intestinal microbiota and homeostasis in Wistar Han rats
S. Khare, G. Deloid, R. Molina, K. Gokulan +10 more
2020NanoImpact70 citations Open access
Semantic Scholar
The impact of proinflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabetes
M. Ramos-Rodríguez, Helena Raurell-Vila, M. Colli, M. I. Alvelos +14 more
2019Nature Genetics62 citations Open access
Semantic Scholar
New Mass Spectrometry Technologies Contributing towards Comprehensive and High Throughput Omics Analyses of Single Cells
Sneha P. Couvillion, Ying Zhu, Gabe Nagy, J. Adkins +6 more
2019In Analysis62 citations Open access
Semantic Scholar
A global lipid map reveals host dependency factors conserved across SARS-CoV-2 variants
Scotland Farley, J. Kyle, H. Leier, L. Bramer +6 more
2022Nature Communications55 citations Open access
Semantic Scholar
Deoxyhypusine Synthase Promotes a Pro-Inflammatory Macrophage Phenotype
E. Anderson-Baucum, A. Piñeros, Abhishek Kulkarni, B. Webb-Robertson +11 more
2021Cell Metabolism47 citations Open access
Semantic Scholar
Rapid remodeling of the soil lipidome in response to a drying-rewetting event
Sneha P. Couvillion, Robert Danczak, D. Naylor, Montana L Smith +14 more
2023Microbiome41 citations Open access
Semantic Scholar
Light-Stress Influences the Composition of the Murine Gut Microbiome, Memory Function, and Plasma Metabolome
Young-Mo Kim, A. Snijders, C. Brislawn, K. Stratton +5 more
2019Frontiers in Molecular Biosciences40 citations Open access
Semantic Scholar
Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6 months prior to the onset of autoimmunity
E. Nakayasu, L. Bramer, C. Ansong, A. Schepmoes +21 more
2023Cell Reports Medicine37 citations Open access
Semantic Scholar
BioTransformer 3.0—a web server for accurately predicting metabolic transformation products
D. Wishart, Siyang Tian, Dana Allen, Eponine Oler +6 more
2022Nucleic Acids Res.35 citations Open access
Semantic Scholar
Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection
D. Tabb, Kyowon Jeong, K. Druart, Megan S. Gant +11 more
2023Journal of Proteome Research34 citations Open access
Semantic Scholar
Soil microbial EPS resiliency is influenced by carbon source accessibility
A. Bhattacharjee, Allison M. Thompson, Kaitlynn C. Schwarz, M. Burnet +12 more
202031 citations Open access
Semantic Scholar
Xanthohumol Microbiome and Signature in Healthy Adults (the XMaS Trial): Safety and Tolerability Results of a Phase I Triple-Masked, Placebo-Controlled Clinical Trial
Blake O. Langley, J. Ryan, D. Hanes, J. Phipps +4 more
2021Molecular Nutrition & Food Research29 citations Open access
Semantic Scholar
Prediction of the development of islet autoantibodies through integration of environmental, genetic, and metabolic markers
B. Webb-Robertson, L. Bramer, B. Stanfill, S. Reehl +7 more
2020Journal of Diabetes27 citations Open access
Semantic Scholar
Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data*
B. Stanfill, E. Nakayasu, L. Bramer, Allison M. Thompson +11 more
2018Molecular & Cellular Proteomics27 citations Open access
Semantic Scholar
Systematic review of type 1 diabetes biomarkers reveals regulation in circulating proteins related to complement, lipid metabolism, and immune response
Soumyadeep Sarkar, E. Elliott, Hayden R. Henry, Ivo Díaz Ludovico +8 more
2023Clinical Proteomics26 citations Open access
Semantic Scholar
Unfolded Protein Response Inhibition Reduces Middle East Respiratory Syndrome Coronavirus-Induced Acute Lung Injury
A. Sims, H. Mitchell, Lisa E. Gralinski, J. Kyle +10 more
2021mBio25 citations Open access
Semantic Scholar
DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data
S. Colby, Christine H. Chang, Jessica Bade, Jamie R. Nuñez +8 more
2021Analytical Chemistry25 citations Open access
Semantic Scholar
Xanthohumol microbiome and signature in healthy adults (the XMaS trial): a phase I triple-masked, placebo-controlled clinical trial
R. Bradley, Blake O. Langley, J. Ryan, J. Phipps +5 more
2020Trials23 citations Open access
Semantic Scholar
In situ transformation of ethoxylate and glycol surfactants by shale-colonizing microorganisms during hydraulic fracturing
Morgan V. Evans, G. Getzinger, Jenna L. Luek, Andrea J. Hanson +14 more
2019The ISME Journal23 citations Open access
Semantic Scholar
Evaluation of In silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples
Jamie R. Nuñez, S. Colby, Dennis G. Thomas, M. Tfaily +6 more
2019Journal of Chemical Information and Modeling22 citations Open access
Semantic Scholar
Metabolite, Protein, and Lipid Extraction (MPLEx): A Method that Simultaneously Inactivates Middle East Respiratory Syndrome Coronavirus and Allows Analysis of Multiple Host Cell Components Following Infection
C. Nicora, A. Sims, K. Bloodsworth, Young-Mo Kim +4 more
2019Methods in molecular biology22 citations Open access
Semantic Scholar
GDF15: a potential therapeutic target for type 1 diabetes
Soumyadeep Sarkar, J. T. Melchior, Hayden R. Henry, Farooq Syed +3 more
2022Expert opinion on therapeutic targets21 citations Open access
Semantic Scholar
AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry–mass spectrometry
Joon-Yong Lee, Aivett Bilbao, Christopher R. Conant, K. Bloodsworth +13 more
2021Bioinform.21 citations Open access
Semantic Scholar
Ceramide synthase 2 deletion decreases the infectivity of HIV-1
E. Barklis, Ayna Alfadhli, J. Kyle, L. Bramer +8 more
2021Journal of Biological Chemistry20 citations Open access
Semantic Scholar
yippee like 3 (ypel3) is a novel gene required for myelinating and perineurial glia development
Bernardo Blanco-Sánchez, A. Clément, S. Stednitz, J. Kyle +18 more
2020PLoS Genetics20 citations Open access
Semantic Scholar
Extending Classification Algorithms to Case-Control Studies
B. Stanfill, S. Reehl, L. Bramer, E. Nakayasu +4 more
2019Biomedical Engineering and Computational Biology20 citations Open access
Semantic Scholar
Exploring the impacts of conformer selection methods on ion mobility collision cross section predictions
Felicity F. Nielson, S. Colby, Dennis G. Thomas, R. Renslow +1 more
2020Analytical Chemistry19 citations Open access
Semantic Scholar
Interrogating the role of the milk microbiome in mastitis in the multi-omics era
Sneha P. Couvillion, Katie E. Mostoller, Janet E. Williams, R. Pace +8 more
2023Frontiers in Microbiology18 citations Open access
Semantic Scholar
A Dual-Gated Structures for Lossless Ion Manipulations-Ion Mobility Orbitrap Mass Spectrometry Platform for Combined Ultra-High-Resolution Molecular Analysis.
Adam L. Hollerbach, Yehia M. Ibrahim, Vanessa Meras, R. Norheim +5 more
2023Analytical Chemistry16 citations
Semantic Scholar
Xanthohumol microbiome and signature in adults with Crohn’s disease (the XMaS trial): a protocol for a phase II triple-masked, placebo-controlled clinical trial
Blake O. Langley, J. Ryan, J. Phipps, L. Buttolph +5 more
2022Trials16 citations Open access
Semantic Scholar
Integration of Infant Metabolite, Genetic and Islet Autoimmunity Signatures to Predict Type 1 Diabetes by 6 Years of Age.
B. Webb-Robertson, E. Nakayasu, B. Frohnert, L. Bramer +7 more
2022Journal of Clinical Endocrinology and Metabolism14 citations Open access
Semantic Scholar
Mass Spectrometry Adduct Calculator
Madison R. Blumer, Christine H. Chang, Evangelina Brayfindley, Jamie R. Nuñez +3 more
2021Journal of Chemical Information and Modeling14 citations Open access
Semantic Scholar
Integrated network modeling approach defines key metabolic responses of soil microbiomes to perturbations
Ryan S. McClure, Joon-Yong Lee, T. Chowdhury, E. Bottos +7 more
2020Scientific Reports14 citations Open access
Semantic Scholar

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