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Omar O. Abudayyeh · SciRah

Researcher profile · Semantic Scholar

Omar O. Abudayyeh

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Omar O. Abudayyeh — researcher profile on SciRah

h-index: 48
Works: 97
Citations: 34K

Most-cited papers

Cpf1 is a single RNA-guided endonuclease of a Class 2 CRISPR-Cas system
Bernd Zetsche, J. Gootenberg, Omar O. Abudayyeh, I. Slaymaker +8 more
2015Cell4,372 citations Open access
Semantic Scholar
Nucleic acid detection with CRISPR-Cas13a/C2c2
J. Gootenberg, Omar O. Abudayyeh, Jeong Wook Lee, Patrick Essletzbichler +15 more
2017Science3,438 citations Open access
Semantic Scholar
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
S. Konermann, Mark D. Brigham, Alexandro E. Trevino, J. Joung +8 more
2014Nature2,701 citations Open access
Semantic Scholar
Multiplexed and portable nucleic acid detection platform with Cas13, Cas12a, and Csm6
J. Gootenberg, Omar O. Abudayyeh, Max J. Kellner, J. Joung +2 more
2018Science2,380 citations Open access
Semantic Scholar
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
Omar O. Abudayyeh, J. Gootenberg, S. Konermann, J. Joung +11 more
2016Science2,143 citations Open access
Semantic Scholar
RNA targeting with CRISPR-Cas13a
Omar O. Abudayyeh, J. Gootenberg, Patrick Essletzbichler, Shuo Han +10 more
2017Nature1,821 citations Open access
Semantic Scholar
RNA Editing with CRISPR-Cas13
D. Cox, J. Gootenberg, Omar O. Abudayyeh, Brian Franklin +3 more
2017Science1,635 citations Open access
Semantic Scholar
SHERLOCK: Nucleic acid detection with CRISPR nucleases
Max J. Kellner, Jeremy G. Koob, J. Gootenberg, Omar O. Abudayyeh +1 more
2019Nature Protocols1,447 citations Open access
Semantic Scholar
Field-deployable viral diagnostics using CRISPR-Cas13
C. Myhrvold, C. Freije, J. Gootenberg, Omar O. Abudayyeh +20 more
2018Science1,302 citations Open access
Semantic Scholar
Discovery and functional characterization of diverse Class 2 CRISPR-Cas systems
S. Shmakov, Omar O. Abudayyeh, K. Makarova, Y. Wolf +8 more
2015Molecules and Cells1,156 citations Open access
Semantic Scholar
Genome-scale CRISPR-Cas9 Knockout and Transcriptional Activation Screening
J. Joung, S. Konermann, J. Gootenberg, Omar O. Abudayyeh +4 more
2017Nature Protocols1,152 citations Open access
Semantic Scholar
Engineered CRISPR-Cas9 nuclease with expanded targeting space
H. Nishimasu, Xi Shi, Soh Ishiguro, L. Gao +17 more
2018Science975 citations Open access
Semantic Scholar
CRISPR-based diagnostics
Michael M. Kaminski, Omar O. Abudayyeh, J. Gootenberg, Feng Zhang +1 more
2021Nature Biomedical Engineering960 citations Open access
Semantic Scholar
Diversity and evolution of class 2 CRISPR–Cas systems
S. Shmakov, A. Smargon, D. Scott, D. Cox +9 more
2017Nature Reviews Microbiology943 citations Open access
Semantic Scholar
Multiplex gene editing by CRISPR-Cpf1 through autonomous processing of a single crRNA array
Bernd Zetsche, Matthias Heidenreich, Prarthana Mohanraju, I. Fedorova +11 more
2016Nature Biotechnology691 citations Open access
Semantic Scholar
Clinical validation of a Cas13-based assay for the detection of SARS-CoV-2 RNA
M. Patchsung, K. Jantarug, A. Pattama, K. Aphicho +40 more
2020Nature Biomedical Engineering591 citations Open access
Semantic Scholar
Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing
J. Joung, Alim Ladha, M. Saito, Nam-Gyun Kim +19 more
2020New England Journal of Medicine564 citations Open access
Semantic Scholar
A melanoma cell state distinction influences sensitivity to MAPK pathway inhibitors
D. Konieczkowski, C. Johannessen, Omar O. Abudayyeh, J. W. Kim +13 more
2014Cancer Discovery492 citations Open access
Semantic Scholar
Drag-and-drop genome insertion of large sequences without double-strand DNA cleavage using CRISPR-directed integrases
Matthew T. N. Yarnall, Eleonora I. Ioannidi, Cian Schmitt-Ulms, Rohan N. Krajeski +24 more
2022Nature Biotechnology411 citations Open access
Semantic Scholar
A cytosine deaminase for programmable single-base RNA editing
Omar O. Abudayyeh, J. Gootenberg, Brian Franklin, Jeremy G. Koob +6 more
2019Science400 citations Open access
Semantic Scholar
Genome-scale Activation Screen Identifies a LncRNA Locus that Regulates a Gene Neighborhood
J. Joung, Jesse M. Engreitz, S. Konermann, Omar O. Abudayyeh +11 more
2017Nature397 citations Open access
Semantic Scholar
Programmable inhibition and detection of RNA viruses using Cas13
C. Freije, C. Myhrvold, C. Boehm, A. Lin +9 more
2019Molecules and Cells369 citations Open access
Semantic Scholar
Structure and Engineering of Francisella novicida Cas9
H. Hirano, J. Gootenberg, T. Horii, Omar O. Abudayyeh +8 more
2016Cell340 citations Open access
Semantic Scholar
A global metagenomic map of urban microbiomes and antimicrobial resistance
D. Danko, D. Bezdan, Evan E. Afshin, Sofia Ahsanuddin +95 more
2021Cell307 citations Open access
Semantic Scholar
Point-of-care testing for COVID-19 using SHERLOCK diagnostics
J. Joung, Alim Ladha, M. Saito, Michael Segel +11 more
2020medRxiv260 citations Open access
Semantic Scholar
Orthogonal gene knock out and activation with a catalytically active Cas9 nuclease
J. Dahlman, Omar O. Abudayyeh, J. Joung, J. Gootenberg +2 more
2015Nature Biotechnology240 citations Open access
Semantic Scholar
Rapid in silico directed evolution by a protein language model with EVOLVEpro.
Kai-Yi Jiang, Zhao-Qing Yan, Matteo Di Bernardo, Samantha R. Sgrizzi +8 more
2024Science236 citations
Semantic Scholar
Programmable RNA targeting with the single-protein CRISPR effector Cas7-11
Ahsen Özcan, Rohan N. Krajeski, Eleonora I. Ioannidi, Brennan Lee +5 more
2021Nature228 citations
Semantic Scholar
CRISPR technologies for genome, epigenome and transcriptome editing
Lukas Villiger, J. Joung, Luke W. Koblan, Jonathan S. Weissman +2 more
2024Nature reviews. Molecular cell biology217 citations
Semantic Scholar
Mass-encoded synthetic biomarkers for multiplexed urinary monitoring of disease
Gabriel A. Kwong, Geoffrey von Maltzahn, G. Murugappan, Omar O. Abudayyeh +8 more
2012Nature Biotechnology196 citations Open access
Semantic Scholar
A Transcription Factor Atlas of Directed Differentiation
J. Joung, Sai Ma, Tristan Tay, Kathryn R. Geiger-Schuller +14 more
2023Cell185 citations Open access
Semantic Scholar
Erratum: Multiplex gene editing by CRISPR–Cpf1 using a single crRNA array
Bernd Zetsche, Matthias Heidenreich, Prarthana Mohanraju, I. Fedorova +11 more
2017Nature Biotechnology173 citations Open access
Semantic Scholar
Nucleic acid detection with CRISPR-Cas 13 a / C 2 c 2 Citation
J. Gootenberg, Omar O. Abudayyeh, Jeong-Yoon Lee, Patrick Essletzbichler +14 more
2017137 citations
Semantic Scholar
High-resolution structure of Cas13b and biochemical characterization of RNA targeting and cleavage
I. Slaymaker, P. Mesa, Max J. Kellner, Soumya Kannan +9 more
2019Cell Reports113 citations Open access
Semantic Scholar
Programmable eukaryotic protein synthesis with RNA sensors by harnessing ADAR
Kai-Yi Jiang, Jeremy G. Koob, X. Chen, Rohan N. Krajeski +8 more
2022Nature Biotechnology101 citations
Semantic Scholar
Characterizing genomic alterations in cancer by complementary functional associations
J. W. Kim, O. Botvinnik, Omar O. Abudayyeh, Chet Birger +31 more
2016Nature Biotechnology101 citations Open access
Semantic Scholar
Nucleic Acid Detection of Plant Genes Using CRISPR-Cas13
Omar O. Abudayyeh, J. Gootenberg, Max J. Kellner, Feng Zhang
2019The CRISPR Journal98 citations Open access
Semantic Scholar
CRISPR diagnostics
Omar O. Abudayyeh, J. Gootenberg
2021Science88 citations
Semantic Scholar
Discovery of Diverse CRISPR-Cas Systems and Expansion of the Genome Engineering Toolbox
E. Koonin, J. Gootenberg, Omar O. Abudayyeh
2023Biochemistry85 citations Open access
Semantic Scholar
Author Correction: SHERLOCK: nucleic acid detection with CRISPR nucleases
Max J. Kellner, Jeremy G. Koob, J. Gootenberg, Omar O. Abudayyeh +1 more
2020Nature Protocols81 citations Open access
Semantic Scholar
Structure and engineering of the type III-E CRISPR-Cas7-11 effector complex.
Kazuki Kato, Wen-Yuan Zhou, S. Okazaki, Yukari Isayama +4 more
2022Cell78 citations Open access
Semantic Scholar
RNA-activated protein cleavage with a CRISPR-associated endopeptidase
Jonathan Strecker, F. E. Demircioglu, David Li, Guilhem Faure +6 more
2022Science72 citations Open access
Semantic Scholar
A 5-min RNA preparation method for COVID-19 detection with RT-qPCR
Alim Ladha, J. Joung, Omar O. Abudayyeh, J. Gootenberg +1 more
2020medRxiv70 citations Open access
Semantic Scholar
Rapid and accurate species identification for ecological studies and monitoring using CRISPR‐based SHERLOCK
M. Baerwald, Alisha M. Goodbla, Raman P. Nagarajan, J. Gootenberg +3 more
2020Molecular Ecology Resources63 citations Open access
Semantic Scholar
Rapid SARS-CoV-2 testing in primary material based on a novel multiplex RT-LAMP assay
B. Schermer, F. Fabretti, Maximilian Damagnez, V. Di Cristanziano +14 more
2020medRxiv61 citations Open access
Semantic Scholar
A Survey of Genome Editing Activity for 16 Cas12a orthologs
Bernd Zetsche, Jonathan Strecker, Omar O. Abudayyeh, J. Gootenberg +2 more
2019The Keio Journal of Medicine52 citations Open access
Semantic Scholar
RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease
Kazuki Kato, S. Okazaki, Cian Schmitt-Ulms, Kai-Yi Jiang +10 more
2022Science50 citations Open access
Semantic Scholar
Programmable RNA-guided DNA endonucleases are widespread in eukaryotes and their viruses
Kai-Yi Jiang, Justin Lim, Samantha R. Sgrizzi, Michael Trinh +7 more
2023Science Advances48 citations Open access
Semantic Scholar
Reprogramming site-specific retrotransposon activity to new DNA sites
Christopher W. Fell, Lukas Villiger, Justin Lim, Masahiro Hiraizumi +14 more
2025Nature45 citations
Semantic Scholar
Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States
J. W. Kim, Omar O. Abudayyeh, Huwate Yeerna, Chen-Hsiang Yeang +32 more
2017Cell Systems44 citations Open access
Semantic Scholar

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Max J. Kellner — researcher profile on SciRah

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