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Chen-Hsiang Yeang · SciRah

Researcher profile · Semantic Scholar

Chen-Hsiang Yeang

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Chen-Hsiang Yeang — researcher profile on SciRah

h-index: 20
Works: 80
Citations: 3,989

Most-cited papers

Multiclass cancer diagnosis using tumor gene expression signatures
S. Ramaswamy, P. Tamayo, R. Rifkin, Sayan Mukherjee +11 more
2001Proceedings of the National Academy of Sciences of the United States of America2,150 citations Open access
Semantic Scholar
Molecular classification of multiple tumor types
Chen-Hsiang Yeang, S. Ramaswamy, P. Tamayo, S. Mukherjee +6 more
2001Intelligent Systems in Molecular Biology291 citations Open access
Semantic Scholar
Combinatorial patterns of somatic gene mutations in cancer
Chen-Hsiang Yeang, F. McCormick, Arnold J. Levine
2008The FASEB Journal201 citations
Semantic Scholar
Detecting Coevolution in and among Protein Domains
Chen-Hsiang Yeang, D. Haussler
2007PLoS Comput. Biol.183 citations Open access
Semantic Scholar
Physical Network Models
Chen-Hsiang Yeang, T. Ideker, T. Jaakkola
2004J. Comput. Biol.180 citations Open access
Semantic Scholar
Impact of genetic dynamics and single-cell heterogeneity on development of nonstandard personalized medicine strategies for cancer
R. Beckman, G. Schemmann, Chen-Hsiang Yeang
2012Proceedings of the National Academy of Sciences of the United States of America103 citations Open access
Semantic Scholar
Validation and refinement of gene-regulatory pathways on a network of physical interactions
Chen-Hsiang Yeang, H. Mak, Scott Mccuine, C. Workman +2 more
2005Genome Biology99 citations Open access
Semantic Scholar
An Analytical Method for Multiclass Molecular Cancer Classification
R. Rifkin, S. Mukherjee, P. Tamayo, S. Ramaswamy +7 more
2003SIAM Review71 citations
Semantic Scholar
Population histories of the United States revealed through fine-scale migration and haplotype analysis
Chengzhen L. Dai, Mohammad M. Vazifeh, Chen-Hsiang Yeang, Remi Tachet +5 more
2019bioRxiv52 citations Open access
Semantic Scholar
Stem Cell Reports, Volume 2 Supplemental Information Suppression of the Sox2 Neural Effector Gene by Prdm1 Promotes Human Germ Cell Fate in Embryonic Stem Cells
I-Ying Lin, Feng-Lan Chiu, Chen-Hsiang Yeang, Hsin-Fu Chen +7 more
51 citations
Semantic Scholar
A joint model of regulatory and metabolic networks
Chen-Hsiang Yeang, Martin Vingron
2006BMC Bioinformatics45 citations Open access
Semantic Scholar
Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States
J. W. Kim, Omar O. Abudayyeh, Huwate Yeerna, Chen-Hsiang Yeang +32 more
2017Cell Systems44 citations Open access
Semantic Scholar
A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations
Charles J. Vaske, Carrie D. House, Truong Luu, Bryan Frank +3 more
2009PLoS Comput. Biol.43 citations Open access
Semantic Scholar
An integrative characterization of recurrent molecular aberrations in glioblastoma genomes
Nardnisa Sintupisut, Pei Liu, Chen-Hsiang Yeang
2013Nucleic Acids Research42 citations Open access
Semantic Scholar
Detecting the coevolution of biosequences--an example of RNA interaction prediction.
Chen-Hsiang Yeang, Jeremy Darot, H. Noller, D. Haussler
2007Molecular biology and evolution36 citations Open access
Semantic Scholar
The C‐degron pathway eliminates mislocalized proteins and products of deubiquitinating enzymes
C. Yeh, Wei-Chieh Huang, Pang-Hung Hsu, Kun-Hai Yeh +7 more
2021EMBO Journal32 citations Open access
Semantic Scholar
Analysis of spatial-temporal gene expression patterns reveals dynamics and regionalization in developing mouse brain
Shen-Ju Chou, Chin-Di Wang, Nardnisa Sintupisut, Zhen-Xian Niou +3 more
2016Scientific Reports25 citations Open access
Semantic Scholar
Time series analysis of gene expression and location data
Chen-Hsiang Yeang, T. Jaakkola
2003Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings.25 citations
Semantic Scholar
Physical network models and multi-source data integration
Chen-Hsiang Yeang, T. Jaakkola
2003Annual International Conference on Research in Computational Molecular Biology25 citations
Semantic Scholar
Modelling bistable tumour population dynamics to design effective treatment strategies
Andrei R. Akhmetzhanov, J. W. Kim, Ryan Sullivan, R. Beckman +2 more
2018bioRxiv24 citations Open access
Semantic Scholar
Long range personalized cancer treatment strategies incorporating evolutionary dynamics
Chen-Hsiang Yeang, R. Beckman
2016Biology Direct19 citations Open access
Semantic Scholar
Genome‐wide normalized score: a novel algorithm to detect fetal trisomy 21 during non‐invasive prenatal testing
Chen-Hsiang Yeang, Gwo-Chin Ma, H.-W. Hsu, Y. S. Lin +5 more
2014Ultrasound in Obstetrics and Gynecology18 citations Open access
Semantic Scholar
Modeling the Combinatorial Functions of Multiple Transcription Factors
Chen-Hsiang Yeang, T. Jaakkola
2005Annual International Conference on Research in Computational Molecular Biology16 citations Open access
Semantic Scholar
Cooperative stability renders protein complex formation more robust and controllable
Kuan-Lun Hsu, Hsueh-Chi S. Yen, Chen-Hsiang Yeang
2022Scientific Reports13 citations Open access
Semantic Scholar
MGSEA – a multivariate Gene set enrichment analysis
Khong-Loon Tiong, Chen-Hsiang Yeang
2019BMC Bioinformatics13 citations Open access
Semantic Scholar
Genome-Wide Gene Expression Analysis Implicates the Immune Response and Lymphangiogenesis in the Pathogenesis of Fetal Chylothorax
Chen-Hsiang Yeang, Gwo-Chin Ma, Jin-Chung Shih, Yu-Shih Yang +11 more
2012PLoS ONE13 citations Open access
Semantic Scholar
Recurrent Structural Motifs Reflect Characteristics of Distinct Networks
Chen-Hsiang Yeang, Liang-Cheng Huang, Wei-Chung Liu
20122012 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining12 citations
Semantic Scholar
Explaining cancer type specific mutations with transcriptomic and epigenomic features in normal tissues
Khong-Loon Tiong, Chen-Hsiang Yeang
2018Scientific Reports11 citations Open access
Semantic Scholar
Evolution of Domain Architectures and Catalytic Functions of Enzymes in Metabolic Systems
Summit Suen, Henry Horng-Shing Lu, Chen-Hsiang Yeang
2012Genome Biology and Evolution11 citations Open access
Semantic Scholar
Personalized cancer treatment strategies incorporating irreversible and reversible drug resistance mechanisms
Wei He, Matthew D. McCoy, R. Riggins, Robert A. Beckman +1 more
2024bioRxiv9 citations Open access
Semantic Scholar
An integrated analysis of molecular aberrations in NCI-60 cell lines
Chen-Hsiang Yeang
2010BMC Bioinformatics9 citations Open access
Semantic Scholar
Exploring candidate biological functions by Boolean Function Networks for Saccharomyces cerevisiae
Maria Simak, Chen-Hsiang Yeang, Henry Horng-Shing Lu
2017PLoS ONE8 citations Open access
Semantic Scholar
Deciphering causal and statistical relations of molecular aberrations and gene expressions in NCI-60 cell lines
Shyh-Dar Li, T. Tagami, Ying-Fu Ho, Chen-Hsiang Yeang
2011BMC Systems Biology8 citations Open access
Semantic Scholar
Nonstandard personalized medicine strategies for cancer may lead to improved patient outcomes.
R. Beckman, Chen-Hsiang Yeang
2014Personalized Medicine7 citations
Semantic Scholar
A Probabilistic Graphical Model of Quantum Systems
Chen-Hsiang Yeang
20102010 Ninth International Conference on Machine Learning and Applications7 citations
Semantic Scholar
Integration of metabolic reactions and gene regulation.
Chen-Hsiang Yeang
2009Methods in molecular biology7 citations
Semantic Scholar
Identifying Coevolving Partners from Paralogous Gene Families
Chen-Hsiang Yeang
2008Evolutionary bioinformatics online7 citations Open access
Semantic Scholar
Altered assembly paths mitigate interference among paralogous complexes
Chi-Wei Yeh, Kuan-Lun Hsu, Shu-Ting Lin, Wei-Chieh Huang +9 more
2024Nature Communications6 citations Open access
Semantic Scholar
Putative effectors for prognosis in lung adenocarcinoma are ethnic and gender specific
A. Woolston, Nardnisa Sintupisut, Tzu-Pin Lu, L. Lai +3 more
2015OncoTarget6 citations Open access
Semantic Scholar
Integration of Metabolic Reactions and Gene Regulation
Chen-Hsiang Yeang
2011Molecular Biotechnology6 citations
Semantic Scholar
A quantitative model for the rate-limiting process of UGA alternative assignments to stop and selenocysteine codons
Yen-Fu Chen, Hsiu-Chuan Lin, K. Chuang, Chih-Hsu Lin +2 more
2017PLoS Comput. Biol.5 citations Open access
Semantic Scholar
Generalized Evolutionary Classifier for Evolutionary Guided Precision Medicine
M. McCoy, Chen-Hsiang Yeang, S. Bahnassy, Stanley Tam +3 more
2025JCO Precision Oncology4 citations Open access
Semantic Scholar
Assessing transcriptomic heterogeneity of single-cell RNASeq data by bulk-level gene expression data
Khong-Loon Tiong, Dmytro Luzhbin, Chen-Hsiang Yeang
2024BMC Bioinformatics4 citations Open access
Semantic Scholar
An integrated analysis of the cancer genome atlas data discovers a hierarchical association structure across thirty three cancer types
Khong-Loon Tiong, Nardnisa Sintupisut, Min Lin, C. Cheng +6 more
2022PLOS Digital Health4 citations Open access
Semantic Scholar
Game Theoretic Algorithms for Protein-DNA binding
Luis Pérez-Breva, Luis E. Ortiz, Chen-Hsiang Yeang, T. Jaakkola
2006Neural Information Processing Systems4 citations
Semantic Scholar
An Information Geometric Perspective on Active Learning
Chen-Hsiang Yeang
2002European Conference on Machine Learning4 citations Open access
Semantic Scholar
Distributed GIS for Monitoring and Modeling Urban Air Quality
Chen-Hsiang Yeang, J. Ferreira, Ayman Ismail
19994 citations
Semantic Scholar
Characterization of gene cluster heterogeneity in single-cell transcriptomic data within and across cancer types
Khong-Loon Tiong, Yu-Wei Lin, Chen-Hsiang Yeang
2022Biology Open3 citations Open access
Semantic Scholar
Genotypes of informative loci from 1000 Genomes data allude evolution and mixing of human populations
Sridevi Padakanti, Khong-Loon Tiong, Yan-Bin Chen, Chen-Hsiang Yeang
2021Scientific Reports3 citations Open access
Semantic Scholar
Detection of 22q11.2 microduplication by cell‐free DNA screening and chromosomal microarray in fetus with multiple anomalies
W.-J. Wu, Gwo-Chin Ma, Y.‐S. Lin, Chen-Hsiang Yeang +5 more
2016Ultrasound in Obstetrics and Gynecology3 citations Open access
Semantic Scholar

Frequent co-authors

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T. Jaakkola×6
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T. Jaakkola — researcher profile on SciRah
Khong-Loon Tiong×6
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P. Tamayo×5
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P. Tamayo — researcher profile on SciRah
Nardnisa Sintupisut×5
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Nardnisa Sintupisut — researcher profile on SciRah

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J. Mesirov — researcher profile on SciRah

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S. Ramaswamy×3

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S. Ramaswamy — researcher profile on SciRah

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R. Rifkin — researcher profile on SciRah

Michael Angelo×3

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Michael Angelo — researcher profile on SciRah

Michael Reich×3

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Michael Reich — researcher profile on SciRah

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T. Golub — researcher profile on SciRah