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M. Baerwald · SciRah

Researcher profile · Semantic Scholar

M. Baerwald

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M. Baerwald — researcher profile on SciRah

h-index: 18
Works: 68
Citations: 1,204

Most-cited papers

Migration-related phenotypic divergence is associated with epigenetic modifications in rainbow trout
M. Baerwald, Mariah H. Meek, M. Stephens, Raman P. Nagarajan +5 more
2015Molecular Ecology149 citations Open access
Semantic Scholar
Toward a national eDNA strategy for the United States
Ryan P. Kelly, D. Lodge, Kai N. Lee, S. Theroux +32 more
2023Environmental DNA88 citations Open access
Semantic Scholar
Transcriptional Response to Acute Thermal Exposure in Juvenile Chinook Salmon Determined by RNAseq
K. Tomalty, Mariah H. Meek, M. Stephens, G. Rincón +3 more
2015G3: Genes, Genomes, Genetics83 citations Open access
Semantic Scholar
A major effect quantitative trait locus for whirling disease resistance identified in rainbow trout (Oncorhynchus mykiss)
M. Baerwald, Jessica L. Petersen, Ronald P. Hedrick, G. Schisler +1 more
2011Heredity83 citations Open access
Semantic Scholar
Environmental DNA Methods for Ecological Monitoring and Biodiversity Assessment in Estuaries
Raman P. Nagarajan, Mallory E. Bedwell, A. Holmes, Thiago M. Sanches +14 more
2022Estuaries and Coasts74 citations Open access
Semantic Scholar
Rapid and accurate species identification for ecological studies and monitoring using CRISPR‐based SHERLOCK
M. Baerwald, Alisha M. Goodbla, Raman P. Nagarajan, J. Gootenberg +3 more
2020Molecular Ecology Resources63 citations Open access
Semantic Scholar
Discovery of genes implicated in whirling disease infection and resistance in rainbow trout using genome-wide expression profiling
M. Baerwald, A. Welsh, R. Hedrick, B. May
2008BMC Genomics56 citations Open access
Semantic Scholar
Characterization of microsatellite loci for five members of the minnow family Cyprinidae found in the Sacramento-San Joaquin Delta and its tributaries
M. Baerwald, B. May
200454 citations
Semantic Scholar
Ten real‐time PCR assays for detection of fish predation at the community level in the San Francisco Estuary–Delta
Scott Brandl, G. Schumer, Brian M. Schreier, J. L. Conrad +2 more
2015Molecular Ecology Resources39 citations
Semantic Scholar
Sequencing improves our ability to study threatened migratory species: Genetic population assignment in California's Central Valley Chinook salmon
Mariah H. Meek, M. Baerwald, M. Stephens, Alisha M. Goodbla +3 more
2016Ecology and Evolution37 citations Open access
Semantic Scholar
Detection of Threatened Delta Smelt in the Gut Contents of the Invasive Mississippi Silverside in the San Francisco Estuary Using TaqMan Assays
M. Baerwald, Brian M. Schreier, G. Schumer, B. May
201234 citations
Semantic Scholar
A first-generation linkage map of the Pacific lion-paw scallop (Nodipecten subnodosus): Initial evidence of QTL for size traits and markers linked to orange shell color
J. Petersen, M. Baerwald, A. Ibarra, B. May
201231 citations
Semantic Scholar
Critical considerations for communicating environmental DNA science
E. D. Stein, C. Jerde, E. A. Allan, Adam J. Sepulveda +7 more
2023Environmental DNA29 citations Open access
Semantic Scholar
Examination of Predation on Early Life Stage Delta Smelt in the San Francisco Estuary Using DNA Diet Analysis
Brian M. Schreier, M. Baerwald, J. L. Conrad, G. Schumer +1 more
201628 citations
Semantic Scholar
Temporal expression patterns of rainbow trout immune-related genes in response to Myxobolus cerebralis exposure.
M. Baerwald
2013Fish and Shellfish Immunology27 citations
Semantic Scholar
Evaluating environmental DNA detection of a rare fish in turbid water using field and experimental approaches
A. Holmes, M. Baerwald, J. Rodzen, Brian M. Schreier +2 more
2024PeerJ25 citations Open access
Semantic Scholar
Genetic analysis reveals two distinct Sacramento splittail (Pogonichthys macrolepidotus) populations
M. Baerwald, V. Biến, F. Feyrer, B. May
2006Conservation Genetics24 citations
Semantic Scholar
Using Next-Generation Sequencing to Assist a Conservation Hatchery: a Single-Nucleotide Polymorphism Panel for the Genetic Management of Endangered Delta Smelt
Ryan Lew, A. Finger, M. Baerwald, Alisha M. Goodbla +2 more
201523 citations Open access
Semantic Scholar
RNA sequencing describes both population structure and plasticity-selection dynamics in a non-model fish
M. Thorstensen, M. Baerwald, K. Jeffries
2021BMC Genomics18 citations Open access
Semantic Scholar
Metapopulation structure of a semi-anadromous fish in a dynamic environment
F. Feyrer, J. Hobbs, S. Acuña, B. Mahardja +4 more
201518 citations
Semantic Scholar
Identifying hidden biocomplexity and genomic diversity in Chinook salmon, an imperiled species with a history of anthropogenic influence
Mariah H. Meek, M. Stephens, Alisha M. Goodbla, B. May +1 more
202017 citations
Semantic Scholar
Survival and Reproduction of Myxobolus cerebralis-Resistant Rainbow Trout Introduced to the Colorado River and Increased Resistance of Age-0 Progeny
Eric R. Fetherman, D. Winkelman, M. Baerwald, G. Schisler
2014PLoS ONE17 citations Open access
Semantic Scholar
CRISPR‐based environmental DNA detection for a rare endangered estuarine species
Raman P. Nagarajan, Leigh Sanders, Natalie Kolm, Alejandro J. Perez +4 more
2024Environmental DNA15 citations Open access
Semantic Scholar
Rapid CRISPR‐Cas13a genetic identification enables new opportunities for listed Chinook salmon management
M. Baerwald, Emily C Funk, Alisha M. Goodbla, M. Campbell +3 more
2023Molecular Ecology Resources13 citations Open access
Semantic Scholar
Characterization of 24 microsatellite loci in delta smelt, Hypomesus transpacificus, and their cross‐species amplification in two other smelt species of the Osmeridae family
K. Fisch, J. Petersen, M. Baerwald, John K. Pedroia +1 more
2009Molecular Ecology Resources13 citations
Semantic Scholar
Non-invasive genetic monitoring for the threatened valley elderberry longhorn beetle
Raman P. Nagarajan, Alisha M. Goodbla, Emily E. Graves, M. Baerwald +2 more
2020PLoS ONE12 citations Open access
Semantic Scholar
TaqMan assays for the genetic identification of delta smelt (Hypomesus transpacificus) and wakasagi smelt (Hypomesus nipponensis)
M. Baerwald, G. Schumer, Brian M. Schreier, B. May
2011Molecular Ecology Resources12 citations
Semantic Scholar
Distribution of Genetically Differentiated Splittail Populations during the Nonspawning Season
M. Baerwald, F. Feyrer, B. May
200812 citations
Semantic Scholar
Interannual variation in connectivity and comparison of effective population size between two splittail (Pogonichthys macrolepidotus) populations in the San Francisco Estuary
B. Mahardja, B. May, F. Feyrer, Robert Coalter +3 more
2015Conservation Genetics11 citations
Semantic Scholar
The effect of multiple spawning events on cohort genetic diversity of lake sturgeon (Acipenser fulvescens) in the Kaministiquia River
A. Welsh, M. Baerwald, Michael Friday, B. May
2015Environmental Biology of Fishes11 citations
Semantic Scholar
Inter-population differences in salinity tolerance and osmoregulation of juvenile wild and hatchery-born Sacramento splittail
C. Verhille, Theresa F. Dabruzzi, D. Cocherell, B. Mahardja +4 more
2016Conservation Physiology9 citations Open access
Semantic Scholar
Genomics and 20 years of sampling reveal phenotypic differences between subpopulations of outmigrating Central Valley Chinook salmon
T. Thompson, Shannon J. O'Leary, Sean O'Rourke, C. Tarsa +3 more
2024Evolutionary Applications8 citations Open access
Semantic Scholar
Captive-reared Delta Smelt (Hypomesus transpacificus) exhibit high survival in natural conditions using in situ enclosures
M. Baerwald, Nicole Kwan, C. Pien, Grace Auringer +11 more
2023PLoS ONE8 citations Open access
Semantic Scholar
Generation of Quantitative Polymerase Chain Reaction Detectability Half-Lives and Comparison of Sampling Protocols for Genetic Diet Studies of San Francisco Estuary Fishes
Scott Brandl, Brian M. Schreier, J. L. Conrad, B. May +1 more
20168 citations
Semantic Scholar
Highly and Lowly Domesticated Endangered Fish From a Conservation Hatchery Diverge in Their Thermal Physiology, Transcriptome, and Methylome
J. Griffiths, Amanda J. Finger, M. Baerwald, Md. Moshiur Rahman +3 more
2025bioRxiv7 citations Open access
Semantic Scholar
Genetic Considerations for Sourcing Steelhead Reintroductions: Investigating Possibilities for the San Joaquin River
Mariah H. Meek, M. Stephens, K. Tomalty, B. May +1 more
20147 citations Open access
Semantic Scholar
Single generation epigenetic change in captivity and reinforcement in subsequent generations in a delta smelt (Hypomesus transpacificus) conservation hatchery
E. Habibi, Michael R. Miller, Andrea D. Schreier, Matthew A. Campbell +4 more
2024Molecular Ecology5 citations Open access
Semantic Scholar
Enumerating Predation on Chinook Salmon, Delta Smelt, and Other San Francisco Estuary Fishes Using Genetics
Scott Brandl, Brian M. Schreier, J. L. Conrad, B. May +1 more
2021North American Journal of Fisheries Management5 citations Open access
Semantic Scholar
Characterization of 36 additional microsatellite loci in splittail (Pogonichthys macrolepidotus) and cross-amplification in five other native Californian cyprinid species
B. Mahardja, Bernie May, M. Baerwald
2012Conservation Genetics Resources5 citations
Semantic Scholar
Examining the Causes and Consequences of Hybridization During Chinook Salmon Reintroductions: Using the San Joaquin River as a Restoration Case Study of Management Options
K. Tomalty, M. Stephens, M. Baerwald, Karrigan Bork +2 more
20144 citations Open access
Semantic Scholar
Insights from a year of field deployments inform the conservation of an endangered estuarine fish
Brittany E. Davis, B. Hammock, Nicole Kwan, Catarina Pien +11 more
2024Conservation Physiology3 citations Open access
Semantic Scholar
Understanding risks and consequences of pathogen infections on the physiological performance of outmigrating Chinook salmon
F. Mauduit, A. Segarra, M. Mandić, A. Todgham +4 more
2022Conservation Physiology3 citations Open access
Semantic Scholar
Considerations for the Development of a Juvenile Production Estimate for Central Valley Spring-Run Chinook Salmon
P. Nelson, M. Baerwald, O. Burgess, Eva Bush +13 more
2022San Francisco Estuary and Watershed Science3 citations Open access
Semantic Scholar
An Open Data Framework for the San Francisco Estuary
M. Baerwald, Brittany Davis, Sarah Lesmeister, B. Mahardja +4 more
2020San Francisco Estuary and Watershed Science3 citations Open access
Semantic Scholar
Genetic characterization of California's Central Valley chinook salmon
Mariah H. Meek, M. Stephens, A. Wong, K. Tomalty +2 more
20143 citations Open access
Semantic Scholar
Genetics of wild, whirling disease resistant rainbow trout populations in Colorado
Brian W. Avila, Eric R. Fetherman, D. Winkelman, M. Baerwald
2025Frontiers in Freshwater Science2 citations Open access
Semantic Scholar
Evaluating the impact of captive ancestry on the growth and survival of Delta Smelt in a captive environment
S. Chase, Brittany E. Davis, Evan W. Carson, Luke Ellison +3 more
2024Aquaculture Reports2 citations Open access
Semantic Scholar
Inter-population differences in salinity tolerance of adult wild Sacramento splittail: osmoregulatory and metabolic responses to salinity
C. Verhille, Theresa F. Dabruzzi, D. Cocherell, B. Mahardja +4 more
2020Conservation Physiology2 citations Open access
Semantic Scholar
Isolation and characterization of microsatellite loci in two non-native hydromedusae in the San Francisco Estuary: Maeotias marginata and Moerisia sp.
Mariah H. Meek, M. Baerwald, A. P. Wintzer, B. May
2009Conservation Genetics Resources2 citations Open access
Semantic Scholar
Design and Laboratory Testing of Enclosures to Support Conservation of an Endangered Estuarine Fish
Daphne Gille, D. Cocherell, A. Peterson, K. Carr +5 more
2026San Francisco Estuary and Watershed Science1 citations Open access
Semantic Scholar

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