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J. Weller · SciRah

Researcher profile · Semantic Scholar

J. Weller

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J. Weller — researcher profile on SciRah

h-index: 13
Works: 32
Citations: 737

Most-cited papers

The Medicago Genome Initiative: a model legume database
C. Bell, R. Dixon, A. Farmer, H. R. Flores +7 more
2001Nucleic Acids Res.171 citations Open access
Semantic Scholar
16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA
R. Weller, J. Weller, David M. Ward
1991Applied and Environmental Microbiology128 citations Open access
Semantic Scholar
The Phytophthora Genome Initiative Database: informatics and analysis for distributed pathogenomic research
M. Waugh, P. Hraber, J. Weller, Yi-He Wu +4 more
2000Nucleic Acids Res.54 citations Open access
Semantic Scholar
ESTAP-an automated system for the analysis of EST data
Chunhong Mao, J. Cushman, G. May, J. Weller
2003Bioinform.51 citations Open access
Semantic Scholar
Genomic typing of Escherichia coli O157:H7 by semi-automated fluorescent AFLP analysis.
Shao-Hua Zhao, S. Mitchell, J. Meng, S. Kresovich +4 more
2000Microbes and infection51 citations Open access
Semantic Scholar
Secondary structure in the target as a confounding factor in synthetic oligomer microarray design
Vladyslava G Ratushna, J. Weller, C. Gibas
2005BMC Genomics45 citations Open access
Semantic Scholar
GeneX: An Open Source gene expression database and integrated tool set
H. Mangalam, Jason E. Stewart, Jiaye Zhou, K. Schlauch +5 more
2001IBM Systems Journal42 citations
Semantic Scholar
Probing dynamic changes in rRNA conformation in the 30S subunit of the Escherichia coli ribosome.
J. Weller, Walter E. Hill
1992Biochemistry37 citations
Semantic Scholar
Spectral embedding finds meaningful (relevant) structure in image and microarray data
B. Higgs, J. Weller, J. Solka
2006BMC Bioinformatics27 citations Open access
Semantic Scholar
On the species of origin: diagnosing the source of symbiotic transcripts
P. Hraber, J. Weller
2001Genome Biology18 citations Open access
Semantic Scholar
AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs
Sunita Kumari, L. Verma, J. Weller
2007BMC Bioinformatics16 citations Open access
Semantic Scholar
Transcriptomics data availability and reusability in the transition from microarray to next-generation sequencing
Gabriella Rustici, Eleanor Williams, Mitra Barzine, A. Brazma +15 more
2021bioRxiv13 citations Open access
Semantic Scholar
The LO-BaFL method and ALS microarray expression analysis
C. Baciu, Kevin J. Thompson, J. Mougeot, B. Brooks +1 more
2012BMC Bioinformatics13 citations Open access
Semantic Scholar
GeneX Va: VBC open source microarray database and analysis software.
Jae K. Lee, Tom Laudeman, J. Kanter, Teela James +11 more
2004BioTechniques9 citations Open access
Semantic Scholar
The Genome Sequence DataBase
Carol Harger, Guanghong Chen, A. Farmer, Wen Huang +5 more
2000Nucleic Acids Res.8 citations Open access
Semantic Scholar
Probing the initiation complex formation on E coli ribosomes using short complementary DNA oligomers.
J. Weller, Walter E. Hill
1991Biochimie8 citations
Semantic Scholar
A high-throughput distributed DNA sequence analysis and database system
Jeff T. Inman, H. R. Flores, G. May, J. Weller +1 more
2001IBM Systems Journal7 citations
Semantic Scholar
Application of Equilibrium Models of Solution Hybridization to Microarray Design and Analysis
R. Gharaibeh, J. M. Newton, J. Weller, C. Gibas
2010PLoS ONE6 citations Open access
Semantic Scholar
A Network Inference Workflow Applied to Virulence‐Related Processes in Salmonella typhimurium
Ronald C. Taylor, M. Singhal, J. Weller, Saeed Khoshnevis +2 more
2009Annals of the New York Academy of Sciences6 citations
Semantic Scholar
Instrumentation for Automated Molecular Marker Acquisition and Data Analysis
S. E. Bates, D. Knorr, J. Weller, J. Ziegle
19966 citations
Semantic Scholar
Probing the interactions of poly(U) and tRNA(Phe) with nucleotides 1530-1542 and 1390-1417 of 16 S rRNA of Escherichia coli.
J. Weller, W. Hill
1994Journal of Biological Chemistry5 citations
Semantic Scholar
A white-box approach to microarray probe response characterization: the BaFL pipeline
Kevin J. Thompson, H. Deshmukh, J. Solka, J. Weller
2009BMC Bioinformatics4 citations Open access
Semantic Scholar
Fluorescent Detection and Analysis of RAPD Amplicons Using the ABI PRISM DNA Sequencers
J. Weller, A. Reddy
19973 citations
Semantic Scholar
16SrRNASequences ofUncultivated HotSpring Cyanobacterial MatInhabitants Retrieved asRandomly PrimedcDNA
R. Weller, J. Weller, D. Ward
19913 citations
Semantic Scholar
ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs
Christopher C. Overall, D. A. Carr, Ehsan S. Tabari, Kevin J. Thompson +1 more
2011BMC Bioinformatics2 citations Open access
Semantic Scholar
An Adenocarcinoma Case Study of the BaFL Protocol: Biological Probe Filtering for Robust Microarray Analysis
K. Thompson, J. Weller
20092 citations
Semantic Scholar
GenoMosaic: on-demand multiple genome comparison and comparative annotation
C. Gibas, David Sturgill, J. Weller
2003Third IEEE Symposium on Bioinformatics and Bioengineering, 2003. Proceedings.2 citations
Semantic Scholar
RNA-seq variants reveal distinct patterns in the aging epitranscriptome: an in-depth analysis of age-matched Alzheimer’s Disease patients and a cognitively normal cohort
Katherine A. Jensen, J. Weller, Kristen E. Funk
2026bioRxiv0 citations Open access
Semantic Scholar
Flanking sequence effects on oligonucleotide hybridization
D. A. Carr, Saeed Koshnevis, Don Kolva, J. Weller
20110 citations
Semantic Scholar
The LO-BaFL pipeline for microarray expression analysis
C. Baciu, J. Mougeot, J. Weller
20100 citations
Semantic Scholar
INCORPORATION OF PHYSICO-CHEMICAL PARAMETERS INTO DESIGN OF OLIGO PROBES FOR MICROARRAY EXPERIMENTS
Vladyslava G Ratushna, C. Gibas, S. Boyle, J. Weller +2 more
20050 citations
Semantic Scholar
Alterations in the accessibility of domain IV of 16SrRNA in active 30S subunits of the Escherichia coli ribosome and interactions with the initiation complex
J. Weller
19900 citations
Semantic Scholar

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