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Kevin J. Thompson · SciRah

Researcher profile · Semantic Scholar

Kevin J. Thompson

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Kevin J. Thompson — researcher profile on SciRah

h-index: 15
Works: 60
Citations: 1,178

Most-cited papers

Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders
George B. Saffouri, R. Shields-Cutler, Jun Chen, Yi Yang +20 more
2019Nature Communications263 citations Open access
Semantic Scholar
A comprehensive analysis of breast cancer microbiota and host gene expression
Kevin J. Thompson, J. Ingle, Xiao-Jia Tang, N. Chia +14 more
2017PLoS ONE165 citations Open access
Semantic Scholar
Circular RNAs and their associations with breast cancer subtypes
Asha A. Nair, Ni-Fang Niu, Xiao-Jia Tang, Kevin J. Thompson +4 more
2016OncoTarget161 citations Open access
Semantic Scholar
Tumor Sequencing and Patient-Derived Xenografts in the Neoadjuvant Treatment of Breast Cancer
M. Goetz, K. Kalari, V. Suman, A. Moyer +24 more
2017Journal of the National Cancer Institute67 citations Open access
Semantic Scholar
Gene Expression, Single Nucleotide Variant and Fusion Transcript Discovery in Archival Material from Breast Tumors
N. Norton, Zhi-Fu Sun, Y. Asmann, D. Serie +11 more
2013PLoS ONE66 citations Open access
Semantic Scholar
Discovery of a glucocorticoid receptor (GR) activity signature using selective GR antagonism in ER-negative breast cancer
Diana C. West, M. Kocherginsky, Eva Tonsing-Carter, D. Dolcen +19 more
2018Clinical Cancer Research61 citations Open access
Semantic Scholar
Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study
Jia Yu, B. Qin, A. Moyer, J. Sinnwell +26 more
2017Breast Cancer Research55 citations Open access
Semantic Scholar
Characteristics and Spatially Defined Immune (micro)landscapes of Early-stage PD-L1–positive Triple-negative Breast Cancer
Jodi M. Carter, M. Polley, R. Leon-Ferre, J. Sinnwell +13 more
2021Clinical Cancer Research51 citations Open access
Semantic Scholar
Luminal androgen receptor breast cancer subtype and investigation of the microenvironment and neoadjuvant chemotherapy response
Kevin J. Thompson, R. Leon-Ferre, J. Sinnwell, D. Zahrieh +16 more
2022NAR Cancer39 citations Open access
Semantic Scholar
The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data
Xiao-Jia Tang, S. Baheti, K. Shameer, Kevin J. Thompson +11 more
2014Nucleic Acids Research39 citations Open access
Semantic Scholar
BBBomics-Human Blood Brain Barrier Transcriptomics Hub
K. Kalari, Kevin J. Thompson, Asha A. Nair, Xiao-Jia Tang +5 more
2016Frontiers in Neuroscience36 citations Open access
Semantic Scholar
Exome sequencing reveals frequent deleterious germline variants in cancer susceptibility genes in women with invasive breast cancer undergoing neoadjuvant chemotherapy
Marissa S. Ellingson, S. Hart, K. Kalari, V. Suman +25 more
2015Breast Cancer Research and Treatment29 citations Open access
Semantic Scholar
An Integrated Model of the Transcriptome of HER2-Positive Breast Cancer
K. Kalari, B. Necela, Xiao-Jia Tang, Kevin J. Thompson +18 more
2013PLoS ONE20 citations Open access
Semantic Scholar
COBRA-LIKE 2 , a Member of the Glycosylphosphatidylinositol-Anchored COBRA-LIKE Family , Plays a Role in Cellulose Deposition in Arabidopsis Seed Coat Mucilage Secretory Cells 1 , 2 [ OPEN ]
Daniela Ben-Tov, Yael Abraham, Shira Stav, Kevin J. Thompson +6 more
201517 citations
Semantic Scholar
Estrogen receptor beta repurposes EZH2 to suppress oncogenic NFκB/p65 signaling in triple negative breast cancer
K. Aspros, Jodi M. Carter, T. Hoskin, V. Suman +23 more
2022npj Breast Cancer15 citations Open access
Semantic Scholar
PANOPLY: Omics-guided drug prioritization method tailored to an individual patient
K. Kalari, J. Sinnwell, Kevin J. Thompson, Xiao-Jia Tang +9 more
2017bioRxiv14 citations Open access
Semantic Scholar
Molecular Mechanisms Underlying Amyloid Beta Peptide Mediated Upregulation of Vascular Cell Adhesion Molecule-1 in Alzheimer Disease
Vrishali S. Salian, Xiao-Jia Tang, Kevin J. Thompson, G. Curran +4 more
2024Journal of Pharmacology and Experimental Therapeutics13 citations Open access
Semantic Scholar
Differential Effects of Alzheimer's Disease Aβ40 and 42 on Endocytosis and Intraneuronal Trafficking.
Rajesh S. Omtri, Kevin J. Thompson, Xiao-Jia Tang, C. C. Gali +4 more
2018Neuroscience13 citations
Semantic Scholar
The LO-BaFL method and ALS microarray expression analysis
C. Baciu, Kevin J. Thompson, J. Mougeot, B. Brooks +1 more
2012BMC Bioinformatics13 citations Open access
Semantic Scholar
Integration of multiomics data shows down regulation of mismatch repair and tubulin pathways in triple-negative chemotherapy-resistant breast tumors
Xiao-Jia Tang, Kevin J. Thompson, K. Kalari, J. Sinnwell +11 more
2023Breast Cancer Research9 citations Open access
Semantic Scholar
OmicsFootPrint: a framework to integrate and interpret multi-omics data using circular images and deep neural networks
Xiao-Jia Tang, N. Prodduturi, Kevin J. Thompson, Richard Weinshilboum +8 more
2024Nucleic Acids Research7 citations Open access
Semantic Scholar
Pericyte Control of Gene Expression in the Blood-Brain Barrier Endothelium: Implications for Alzheimer’s Disease
Douglas Nelson, Kevin J. Thompson, Lushan Wang, Zeng-Tao Wang +4 more
2024Journal of Alzheimer's Disease4 citations Open access
Semantic Scholar
Frequency of MicroRNA Response Elements Identifies Pathologically Relevant Signaling Pathways in Triple-Negative Breast Cancer
Asha A. Nair, Xiao-Jia Tang, Kevin J. Thompson, P. Vedell +2 more
2020iScience4 citations Open access
Semantic Scholar
A white-box approach to microarray probe response characterization: the BaFL pipeline
Kevin J. Thompson, H. Deshmukh, J. Solka, J. Weller
2009BMC Bioinformatics4 citations Open access
Semantic Scholar
Abstract P1-08-10: Integration of next generation sequencing (NGS) and patient derived xenografts (PDX) to identify novel markers of paclitaxel (T) response in the breast cancer genome guided therapy study (BEAUTY)
M. Goetz, J. Boughey, K. Kalari, J. Eckel-Passow +26 more
20133 citations
Semantic Scholar
OmicsFootPrint: a framework to integrate and interpret multi-omics data using circular images and deep neural networks
Xiao-Jia Tang, N. Prodduturi, Kevin J. Thompson, Richard Weinshilboum +8 more
2024bioRxiv2 citations Open access
Semantic Scholar
Abstract P3-08-01: Characteristics, outcomes and prognostic factors of luminal androgen receptor (LAR) triple-negative breast cancer (TNBC)
R. Leon-Ferre, M. Polley, Hai Liu, K. Kalari +13 more
2019Poster Session Abstracts2 citations
Semantic Scholar
ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs
Christopher C. Overall, D. A. Carr, Ehsan S. Tabari, Kevin J. Thompson +1 more
2011BMC Bioinformatics2 citations Open access
Semantic Scholar
Abstract P5-13-22: Serum thymidine kinase 1 activity (TKa) levels and progression-free survival (PFS) in patients (pts) with hormone receptor positive (HR+) HER2-negative metastatic breast cancer (MBC) on palbociclib (Pb) and endocrine therapy (ET)
C. O'Sullivan, Jun He, J. Sinnwell, V. Suman +21 more
2022Cancer Research1 citations
Semantic Scholar
Integration of multi-omics data shows downregulation of mismatch repair, purin, and tublin pathways in AR-negative triple-negative chemotherapy-resistant breast tumors
Xiao-Jia Tang, Kevin J. Thompson, K. Kalari, J. Sinnwell +11 more
2022bioRxiv1 citations Open access
Semantic Scholar
Correction to: Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer study
Jia Yu, B. Qin, A. Moyer, J. Sinnwell +26 more
2021Breast Cancer Research1 citations Open access
Semantic Scholar
Abstract P6-04-06: Protein kinase C beta 1 (PKCβ1), a novel drug target of Z-endoxifen, inhibits growth of estrogen receptor positive (ER+) breast cancer via activation of the NF-kB transcription factor RelA
S. Jayaraman, M. Kuffel, K. Kalari, Kevin J. Thompson +4 more
20201 citations
Semantic Scholar
Abstract P3-07-51: Regulation of DNA methyltransferases via TRAF6 determines breast cancer response to decitabine
Jia Yu, B. Qin, J. Boughey, A. Moyer +21 more
20161 citations
Semantic Scholar
Epigenome-wide DNA methylation and genome-wide genotyping in participants entered on NSABP P-1 and P-2 breast cancer prevention trials
J. Ingle, K. Kalari, Kevin J. Thompson, Roland C. Hentz +8 more
2026Breast Cancer Research0 citations Open access
Semantic Scholar
Abstract P4-01-05: Multi-omics data shows downregulation of mismatch repair, purin and tublin pathways in AR-negative triple-negative chemotherapy-resistant tumors
K. Kalari, V. Suman, Xiao-Jia Tang, J. Sinnwell +11 more
2022Cancer Research0 citations
Semantic Scholar
Estrogen receptor beta repurposes EZH2 to suppress oncogenic NFκB/p65 signaling in triple negative breast cancer
K. Aspros, Jodi M. Carter, T. Hoskin, V. Suman +23 more
2022npj Breast Cancer0 citations Open access
Semantic Scholar
Abstract P4-01-03: Multiomics data reveal novel biomarkers for CDK4/6 resistance
K. Kalari, Kevin J. Thompson, J. Sinnwell, Xiao-Jia Tang +20 more
2022Cancer Research0 citations
Semantic Scholar
Abstract PS5-24: Novel genomic variants and pathways associated with baseline serum thymidine kinase 1 levels in HR-positive HER2-negative MBC patients commencing palbociclib and letrozole
Ciara O. Sullivan, K. Kalari, V. Suman, P. Vedell +20 more
20210 citations
Semantic Scholar
Abstract PD8-04: Antitumor activity of Z-endoxifen (ENDX) is mediated via PKCβ1-dependent ERα loss and cell cycle arrest in ERα-positive breast cancer
S. Jayaraman, M. Kuffel, K. Kalari, Kevin J. Thompson +9 more
20210 citations
Semantic Scholar
Abstract P2-11-07: Comprehensive tumor sequencing to identify biomarkers of palbociclib response: First report of the PROMISE study
Ciara O. Sullivan, K. Kalari, V. Suman, P. Vedell +24 more
20200 citations
Semantic Scholar
Abstract 1928: Study of copy number amplification and chemo-response in triple negative breast cancer
J. M. Grainger, Jia Yu, K. Kalari, P. Vedell +5 more
2020Experimental and Molecular Therapeutics0 citations
Semantic Scholar
RDH10 and ATRA sensitize triple-negative breast cancer to taxane-based chemotherapy through regulation of PIN1
J. M. Grainger, Lingxin Zhang, Jia Yu, P. Vedell +6 more
20200 citations Open access
Semantic Scholar
Abstract P1-03-04: Molecular subtyping of androgen receptor-positive patients using gene expression profiles
Kevin J. Thompson, T. Alaparthi, J. Sinnwell, Erin E. Carlson +10 more
2019Poster Session Abstracts0 citations
Semantic Scholar
Frequency of MicroRNA Response Elements Identifies Pathologically Relevant Signaling Pathways in Cancers
Asha A. Nair, Xiao-Jia Tang, Kevin J. Thompson, K. Kalari +1 more
2019bioRxiv0 citations Open access
Semantic Scholar
Abstract P3-06-10: Multiscale modeling of omics data for precision breast cancer treatment
K. Kalari, J. Sinnwell, Kevin J. Thompson, Xiao-Jia Tang +12 more
2019Poster Session Abstracts0 citations
Semantic Scholar
PANOPLY: A computational method for identification of promising drugs for a patient based on multidimensional data
K. Kalari, J. Sinnwell, Kevin J. Thompson, Xiao-Jia Tang +10 more
20170 citations
Semantic Scholar
Abstract 3298: Distinct microbiome populations within breast cancer microenvironments
Kevin J. Thompson, J. Sinnwell, Xiao-Jia Tang, J. Ingle +2 more
20160 citations
Semantic Scholar
Abstract PD3-3: Impact of neoadjuvant chemotherapy on the clonal composition of breast cancer
M. Goetz, M. Barrett, K. Kalari, V. Suman +27 more
20150 citations
Semantic Scholar
Abstract 5592: Molecular classification of triple negative breast cancer via RNA-sequencing data
Kevin J. Thompson, Xiao-Jia Tang, Zhi-Fu Sun, J. Sinnwell +13 more
20140 citations
Semantic Scholar
Abstract 1195: Feasibility of using percutaneous tumor biopsies from a prospective neoadjuvant breast cancer study to develop patient derived xenografts and assessin vivochemotherapy sensitivity
Jia Yu, P. Yin, Bowen Gao, J. Sinnwell +28 more
20140 citations
Semantic Scholar

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A. Moyer — researcher profile on SciRah