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S. Henikoff · SciRah

Researcher profile · Semantic Scholar

S. Henikoff

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S. Henikoff — researcher profile on SciRah

h-index: 140
Works: 513
Citations: 96K

Most-cited papers

CUT&Tag for efficient epigenomic profiling of small samples and single cells
Hatice S. Kaya-Okur, Steven J. Wu, Christine A. Codomo, Erica S. Pledger +4 more
2019Nature Communications1,914 citations Open access
Semantic Scholar
Peak calling by Sparse Enrichment Analysis for CUT&RUN chromatin profiling
Michael P. Meers, Dan Tenenbaum, S. Henikoff
2019Epigenetics & Chromatin496 citations Open access
Semantic Scholar
Improved CUT&RUN chromatin profiling tools
Michael P. Meers, Terri D. Bryson, J. Henikoff, S. Henikoff
2019eLife404 citations Open access
Semantic Scholar
Efficient low-cost chromatin profiling with CUT&Tag
Hatice S. Kaya-Okur, Derek H. Janssens, J. Henikoff, K. Ahmad +1 more
2020Nature Protocols357 citations Open access
Semantic Scholar
Sequence, Chromatin and Evolution of Satellite DNA
J. Thakur, Jenika Packiaraj, S. Henikoff
2021International Journal of Molecular Sciences193 citations Open access
Semantic Scholar
Histone variants at a glance
P. Talbert, S. Henikoff
2021Journal of Cell Science183 citations Open access
Semantic Scholar
What makes a centromere?
P. Talbert, S. Henikoff
2020Experimental Cell Research183 citations Open access
Semantic Scholar
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression
Steven J. Wu, Scott N. Furlan, Anca B. Mihalas, Hatice S. Kaya-Okur +11 more
2021Nature Biotechnology169 citations Open access
Semantic Scholar
Non-B-Form DNA Is Enriched at Centromeres
Sivakanthan Kasinathan, S. Henikoff
2018Molecular biology and evolution145 citations Open access
Semantic Scholar
Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation
S. Henikoff, J. Henikoff, Hatice S. Kaya-Okur, K. Ahmad
2020eLife130 citations Open access
Semantic Scholar
Pioneer factor-nucleosome binding events during differentiation are motif-encoded
Michael P. Meers, Derek H. Janssens, S. Henikoff
2019Molecules and Cells124 citations Open access
Semantic Scholar
Supplementary Information for Quantitative MNase-seq accurately maps nucleosome occupancy levels
Răzvan V. Chereji, Terri D. Bryson, S. Henikoff
2019110 citations
Semantic Scholar
MYCN amplification and ATRX mutations are incompatible in neuroblastoma
Maged Zeineldin, Sara M. Federico, Xiang Chen, Yi-Ping Fan +33 more
2018Nature Communications108 citations Open access
Semantic Scholar
Old cogs, new tricks: the evolution of gene expression in a chromatin context
P. Talbert, Michael P. Meers, S. Henikoff
2019Nature reviews genetics96 citations
Semantic Scholar
The Yin and Yang of Histone Marks in Transcription.
P. Talbert, S. Henikoff
2021Annual review of genomics and human genetics (Print)77 citations Open access
Semantic Scholar
Automated CUT&Tag profiling of chromatin heterogeneity in mixed-lineage leukemia
Derek H. Janssens, Michael P. Meers, Steven J. Wu, E. Babaeva +4 more
2020Nature Genetics77 citations Open access
Semantic Scholar
Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag
Michael P. Meers, Geneva Llagas, Derek H. Janssens, Christine A. Codomo +1 more
2022Nature Biotechnology74 citations Open access
Semantic Scholar
Epigenome Regulation by Dynamic Nucleosome Unwrapping
Sandipan Brahma, S. Henikoff
2019TIBS -Trends in Biochemical Sciences. Regular ed73 citations Open access
Semantic Scholar
Nucleosome patterns in circulating tumor DNA reveal transcriptional regulation of advanced prostate cancer phenotypes
N. De Sarkar, Robert D. Patton, Anna-Lisa Doebley, B. Hanratty +29 more
2022bioRxiv63 citations Open access
Semantic Scholar
The genetics and epigenetics of satellite centromeres
P. Talbert, S. Henikoff
2022Genome Research60 citations Open access
Semantic Scholar
The structure of a virus-encoded nucleosome
M. Valencia-Sánchez, S. Abini-Agbomson, Miao Wang, Rachel Lee +9 more
2021Nature Structural & Molecular Biology57 citations Open access
Semantic Scholar
Histone deposition pathways determine the chromatin landscapes of H3.1 and H3.3 K27M oncohistones
J. Sarthy, Michael P. Meers, Derek H. Janssens, J. Henikoff +7 more
2020bioRxiv56 citations Open access
Semantic Scholar
DUX4-Induced Histone Variants H3.X and H3.Y Mark DUX4 Target Genes for Expression
R. Resnick, Chao-Jen Wong, Danielle C Hamm, S. R. Bennett +5 more
2019Cell Reports52 citations Open access
Semantic Scholar
Trans- and cis-acting effects of Firre on epigenetic features of the inactive X chromosome
H. Fang, Giancarlo Bonora, Jordan P. Lewandowski, J. Thakur +8 more
2020Nature Communications50 citations Open access
Semantic Scholar
Max deletion destabilizes MYC protein and abrogates Eµ-Myc lymphomagenesis
Haritha Mathsyaraja, B. Freie, Pei-Feng Cheng, E. Babaeva +4 more
2019Genes & Development50 citations Open access
Semantic Scholar
Architectural RNA in chromatin organization
J. Thakur, S. Henikoff
2020Biochemical Society Transactions47 citations Open access
Semantic Scholar
CUT&Tag2for1: a modified method for simultaneous profiling of the accessible and silenced regulome in single cells
Derek H. Janssens, Dominik J. Otto, Michael P. Meers, Manu Setty +2 more
2022Genome Biology44 citations Open access
Semantic Scholar
Transcriptional-translational conflict is a barrier to cellular transformation and cancer progression
Sujata Jana, Sandipan Brahma, Sonali Arora, Cynthia L. Wladyka +21 more
2023Cancer Cell39 citations Open access
Semantic Scholar
Short H2A histone variants are expressed in cancer
G. Chew, M. Bleakley, R. Bradley, Harmit S. Malik +3 more
2021Nature Communications37 citations Open access
Semantic Scholar
Viral histones: pickpocket’s prize or primordial progenitor?
P. Talbert, K. Armache, S. Henikoff
2022Epigenetics & Chromatin36 citations Open access
Semantic Scholar
High-throughput single-cell epigenomic profiling by targeted insertion of promoters (TIP-seq)
D. Bartlett, Vishnu Dileep, Tetsuya Handa, Y. Ohkawa +3 more
2021Journal of Cell Biology36 citations Open access
Semantic Scholar
Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag
S. Henikoff, J. Henikoff, K. Ahmad, Ronald M. Paranal +5 more
2023bioRxiv34 citations Open access
Semantic Scholar
Active enhancers strengthen insulation by RNA-mediated CTCF binding at chromatin domain boundaries
Zubairul Islam, Bharath Saravanan, K. Walavalkar, Umer Farooq +6 more
2023Genome Research32 citations Open access
Semantic Scholar
CUT&Tag Data Processing and Analysis Tutorial v1
Ye Zheng, K. Ahmad, S. Henikoff
2020protocols.io31 citations Open access
Semantic Scholar
Profiling RNA at chromatin targets in situ by antibody-targeted tagmentation
Nadiya Khyzha, S. Henikoff, K. Ahmad
2022bioRxiv28 citations Open access
Semantic Scholar
A modular CRISPR screen identifies individual and combination pathways contributing to HIV-1 latency
E. Hsieh, Derek H. Janssens, P. Paddison, E. Browne +3 more
2022bioRxiv27 citations Open access
Semantic Scholar
Architectural RNA is required for heterochromatin organization
J. Thakur, H. Fang, Trizia Llagas, C. Disteche +1 more
2019bioRxiv27 citations Open access
Semantic Scholar
Unexpected conformational variations of the human centromeric chromatin complex
J. Thakur, S. Henikoff
2018Genes & Development27 citations Open access
Semantic Scholar
A giant virus genome is densely packaged by stable nucleosomes within virions
Terri D. Bryson, P. De Ioannes, M. Valencia-Sánchez, J. Henikoff +5 more
2022bioRxiv23 citations Open access
Semantic Scholar
Managing the steady state chromatin landscape by nucleosome dynamics
K. Ahmad, S. Henikoff, S. Ramachandran
2022Annual Review of Biochemistry23 citations Open access
Semantic Scholar
Centromere drive: chromatin conflict in meiosis.
P. Talbert, S. Henikoff
2022Current Opinion in Genetics and Development22 citations Open access
Semantic Scholar
Simplified Epigenome Profiling Using Antibody-tethered Tagmentation
S. Henikoff, J. Henikoff, K. Ahmad
2021Bio-protocol21 citations Open access
Semantic Scholar
Biparental contributions of the H2A.B histone variant control embryonic development in mice
A. Molaro, A. J. Wood, Derek H. Janssens, Selina M Kindelay +6 more
2020PLoS Biology18 citations Open access
Semantic Scholar
EvoChromo: towards a synthesis of chromatin biology and evolution
I. Drinnenberg, F. Berger, S. Elsässer, Peter R Andersen +24 more
2019Development17 citations Open access
Semantic Scholar
The H3.3K27M oncohistone antagonizes reprogramming in Drosophila
K. Ahmad, S. Henikoff
2020bioRxiv16 citations Open access
Semantic Scholar
Aclarubicin stimulates RNA polymerase II elongation at closely spaced divergent promoters
Matthew Wooten, Brittany N Takushi, K. Ahmad, S. Henikoff
2023Science Advances12 citations Open access
Semantic Scholar
Chromosome-specific maturation of the epigenome in the Drosophila male germline
Jamesj Anderson, S. Henikoff, K. Ahmad
2023bioRxiv11 citations Open access
Semantic Scholar
CUT&RUN Profiling of the Budding Yeast Epigenome.
Sandipan Brahma, S. Henikoff
2022Methods in molecular biology11 citations Open access
Semantic Scholar
Global and context-specific transcriptional consequences of oncogenic Fbw7 mutations
H. N. Thirimanne, Feinan Wu, Derek H. Janssens, Jherek Swanger +7 more
2021bioRxiv11 citations Open access
Semantic Scholar
Chromatin bottlenecks in Cancer
J. Sarthy, S. Henikoff, K. Ahmad
2019Trends in Cancer11 citations Open access
Semantic Scholar

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Derek H. Janssens×12
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