G. Olsen

Most-cited papers

The RAST Server: Rapid Annotations using Subsystems Technology
R. Aziz, D. Bartels, Aaron A. Best, M. DeJongh +22 more
2008BMC Genomics12K citations Open access
Semantic Scholar
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
R. Overbeek, Robert Olson, G. Pusch, G. Olsen +10 more
2013Nucleic Acids Res.4,375 citations Open access
Semantic Scholar
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T. Brettin, James J. Davis, T. Disz, R. Edwards +12 more
2015Scientific Reports2,641 citations Open access
Semantic Scholar
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
R. Overbeek, T. Begley, R. Butler, J. Choudhuri +36 more
2005Nucleic Acids Research2,040 citations Open access
Semantic Scholar
Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes
Jeremy A. Frank, C. Reich, Shobha Sharma, J. S. Weisbaum +2 more
2008Applied and Environmental Microbiology1,718 citations Open access
Semantic Scholar
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
A. Wattam, James J. Davis, Rida Assaf, S. Boisvert +24 more
2016Nucleic Acids Res.1,562 citations Open access
Semantic Scholar
The RDP-II (Ribosomal Database Project)
B. Maidak, J. R. Cole, T. Lilburn, C. Parker +6 more
2001Nucleic Acids Res.1,544 citations
Semantic Scholar
KBase: The United States Department of Energy Systems Biology Knowledgebase
A. Arkin, R. Cottingham, C. Henry, N. Harris +77 more
2018Nature Biotechnology1,445 citations Open access
Semantic Scholar
Erratum: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
H. Klenk, R. Clayton, J. Tomb, O. White +47 more
1997Nature1,375 citations Open access
Semantic Scholar
Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii
C. Bult, O. White, G. Olsen, Li-Xin Zhou +36 more
1996Science1,173 citations
Semantic Scholar
fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
G. Olsen, H. Matsuda, R. Hagstrom, R. Overbeek
1994Comput. Appl. Biosci.1,166 citations
Semantic Scholar
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Robert Olson, Rida Assaf, T. Brettin, Neal Conrad +36 more
2022Nucleic Acids Res.1,165 citations Open access
Semantic Scholar
The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
G. Deckert, P. Warren, T. Gaasterland, William G. Young +11 more
1998Nature1,130 citations Open access
Semantic Scholar
The RDP (Ribosomal Database Project)
B. Maidak, G. Olsen, N. Larsen, R. Overbeek +2 more
1997Nucleic Acids Res.980 citations Open access
Semantic Scholar
A new version of the RDP (Ribosomal Database Project)
B. Maidak, J. Cole, C. Parker, G. Garrity +10 more
1999Nucleic Acids Res.943 citations Open access
Semantic Scholar
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
James J. Davis, A. Wattam, R. Aziz, T. Brettin +30 more
2019Nucleic Acids Res.872 citations Open access
Semantic Scholar
Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia
H. Morrison, A. McArthur, F. Gillin, S. B. Aley +25 more
2007Science799 citations
Semantic Scholar
Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells
S. Giovannoni, E. Delong, G. Olsen, N. Pace
1988Journal of Bacteriology753 citations Open access
Semantic Scholar
Aminoacyl-tRNA Synthetases, the Genetic Code, and the Evolutionary Process
C. Woese, G. Olsen, M. Ibba, D. Söll
2000Microbiology and Molecular Biology Reviews699 citations Open access
Semantic Scholar
The RDP (Ribosomal Database Project) continues
B. Maidak, J. Cole, T. Lilburn, C. Parker +8 more
2000Nucleic Acids Res.676 citations Open access
Semantic Scholar
The Ribosomal Database Project (RDP)
B. Maidak, G. Olsen, N. Larsen, R. Overbeek +2 more
1996Nucleic Acids Res.589 citations Open access
Semantic Scholar
The winds of (evolutionary) change: breathing new life into microbiology.
G. Olsen, C. Woese, R. Overbeek
1996Journal of Bacteriology549 citations Open access
Semantic Scholar
The winds of (evolutionary) change: breathing new life into microbiology
G. Olsen, C. Woese, R. Overbeek
1994434 citations Open access
Semantic Scholar
CRITICA: coding region identification tool invoking comparative analysis.
J. Badger, G. Olsen
1999Molecular biology and evolution428 citations Open access
Semantic Scholar
Molecular and genetic organization of the antennapedia gene complex of Drosophila melanogaster.
T. Kaufman, M. A. Seeger, G. Olsen
1990Advances in Genetics355 citations
Semantic Scholar
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species.
P. Haney, J. Badger, Gerald L. Buldak, C. Reich +2 more
1999Proceedings of the National Academy of Sciences of the United States of America333 citations Open access
Semantic Scholar
Evolutionary relationships among sulfur- and iron-oxidizing eubacteria
D. J. Lane, A. P. Harrison, D. Stahl, B. Pace +3 more
1992Journal of Bacteriology274 citations Open access
Semantic Scholar
Archaeal genomics: an overview.
G. Olsen, C. Woese
1997Cell258 citations Open access
Semantic Scholar
Evidence from 12S ribosomal RNA sequences that onychophorans are modified arthropods.
J. Ballard, G. Olsen, D. Faith, W. A. Odgers +2 more
1992Science247 citations
Semantic Scholar
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database
James J. Davis, S. Gerdes, G. Olsen, Robert Olson +5 more
2016Frontiers in Microbiology224 citations Open access
Semantic Scholar
Comparative genomics of closely related salmonellae.
R. Edwards, G. Olsen, S. Maloy
2002Trends in Microbiology222 citations
Semantic Scholar
The ribosomal RNA database project.
G. Olsen, N. Larsen, C. Woese
1991Nucleic Acids Research211 citations Open access
Semantic Scholar
SEED Servers: High-Performance Access to the SEED Genomes, Annotations, and Metabolic Models
R. Aziz, Scott Devoid, T. Disz, R. Edwards +9 more
2012PLoS ONE205 citations Open access
Semantic Scholar
Heterogeneity of Vaginal Microbial Communities within Individuals
Tae Kyung Kim, Susan M. Thomas, M. Ho, Shobha Sharma +15 more
2009Journal of Clinical Microbiology149 citations Open access
Semantic Scholar
An archaeal genomic signature.
D. Graham, R. Overbeek, G. Olsen, C. Woese
2000Proceedings of the National Academy of Sciences of the United States of America134 citations Open access
Semantic Scholar
The essential genome of the crenarchaeal model Sulfolobus islandicus
Chang-Yi Zhang, Alex P. R. Phillips, Rebecca L. Wipfler, G. Olsen +1 more
2018Nature Communications117 citations Open access
Semantic Scholar
Parallel Implementation and Performance of FastDNAml - A Program for Maximum Likelihood Phylogenetic Inference
C. Stewart, Dave Hart, Donald K. Berry, G. Olsen +2 more
2001International Conference on Software Composition110 citations
Semantic Scholar
PATRIC as a unique resource for studying antimicrobial resistance
D. Antonopoulos, Rida Assaf, R. Aziz, T. Brettin +25 more
2017Briefings Bioinform.109 citations Open access
Semantic Scholar
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
L. K. McNeil, C. Reich, R. Aziz, D. Bartels +25 more
2006Nucleic Acids Res.108 citations Open access
Semantic Scholar
Identification of 2D-gel proteins: A comparison of MALDI/TOF peptide mass mapping to μ LC-ESI tandem mass spectrometry
Hanjo Lim, J. Eng, J. Yates, S. Tollaksen +6 more
2003Journal of the American Society for Mass Spectrometry105 citations
Semantic Scholar
Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia.
Aaron A. Best, H. Morrison, A. McArthur, M. Sogin +1 more
2004Genome Research101 citations Open access
Semantic Scholar
Phylogenetic comparative analysis and the secondary structure of ribonuclease P RNA--a review.
N. Pace, D. Smith, G. Olsen, B. James
1989Gene95 citations
Semantic Scholar
Phylogenetic comparative analysis of RNA secondary structure.
B. James, G. Olsen, N. Pace
1989Methods in Enzymology87 citations
Semantic Scholar
Transcription factor IID in the Archaea: sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes.
T. Marsh, C. Reich, R. B. Whitelock, G. Olsen
1994Proceedings of the National Academy of Sciences of the United States of America78 citations Open access
Semantic Scholar
The DOE Systems Biology Knowledgebase (KBase)
A. Arkin, Rick L. Stevens, R. Cottingham, S. Maslov +75 more
2016bioRxiv68 citations Open access
Semantic Scholar
Shotgun proteomics of Methanococcus jannaschii and insights into methanogenesis.
Wen-Hong Zhu, C. Reich, G. Olsen, C. Giometti +1 more
2004Journal of Proteome Research61 citations
Semantic Scholar
Majority-Rule Consensus of Phylogenetic Trees Obtained by Maximum-Likelihood Analysis
L. Jermiin, G. Olsen, K. Mengerson, S. Easteal
199759 citations Open access
Semantic Scholar
The Ribosomal Database Project: updated description
G. Olsen, R. Overbeek, N. Larsen, C. Woese
199155 citations Open access
Semantic Scholar
Modal Codon Usage: Assessing the Typical Codon Usage of a Genome
James J. Davis, G. Olsen
2009Molecular biology and evolution49 citations Open access
Semantic Scholar
Similarity of genes horizontally acquired by Escherichia coli and Salmonella enterica is evidence of a supraspecies pangenome
Katherine A. Karberg, G. Olsen, James J. Davis
2011Proceedings of the National Academy of Sciences of the United States of America48 citations Open access
Semantic Scholar