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D. Antonopoulos · SciRah

Researcher profile · Semantic Scholar

D. Antonopoulos

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D. Antonopoulos — researcher profile on SciRah

h-index: 44
Works: 110
Citations: 18K

Most-cited papers

Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
L. Thompson, Jon G. Sanders, D. McDonald, Amnon Amir +299 more
2017Nature5,511 citations Open access
Semantic Scholar
Dietary fat-induced taurocholic acid production promotes pathobiont and colitis in IL-10−/− mice
Suzanne Devkota, Yun-Wei Wang, M. Musch, V. Leone +5 more
2012Nature1,549 citations Open access
Semantic Scholar
Gender bias in autoimmunity is influenced by microbiota
Leonid A. Yurkovetskiy, Michael P. Burrows, Aly A. Khan, Laura Graham +5 more
2013Immunity863 citations Open access
Semantic Scholar
Commensal bacteria protect against food allergen sensitization
A. Stefka, Taylor J. Feehley, P. Tripathi, Ju Qiu +11 more
2014Proceedings of the National Academy of Sciences of the United States of America735 citations Open access
Semantic Scholar
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
Jennifer M. Brulc, D. Antonopoulos, Margret E. Berg Miller, Melissa K. Wilson +10 more
2009Proceedings of the National Academy of Sciences of the United States of America703 citations Open access
Semantic Scholar
16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis
Yun-Wei Wang, Jeanette D. Hoenig, K. Malin, Sanaa Qamar +5 more
2009The ISME Journal607 citations Open access
Semantic Scholar
Exercise Prevents Weight Gain and Alters the Gut Microbiota in a Mouse Model of High Fat Diet-Induced Obesity
C. Evans, K. LePard, Jeff W. Kwak, Mary C. Stancukas +10 more
2014PLoS ONE551 citations Open access
Semantic Scholar
Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation
D. Antonopoulos, S. Huse, H. Morrison, T. Schmidt +2 more
2009Infection and Immunity539 citations Open access
Semantic Scholar
Innate and adaptive humoral responses coat distinct commensal bacteria with immunoglobulin A
Jeffrey J. Bunker, T. Flynn, J. Koval, Dustin G. Shaw +8 more
2015Immunity497 citations Open access
Semantic Scholar
Natural polyreactive IgA antibodies coat the intestinal microbiota
Jeffrey J. Bunker, S. Erickson, T. Flynn, Carole Henry +6 more
2017Science441 citations Open access
Semantic Scholar
Healthy infants harbor intestinal bacteria that protect against food allergy
Taylor J. Feehley, C. Plunkett, R. Bao, Sung-Min-Choi Hong +10 more
2019Nature Medicine411 citations Open access
Semantic Scholar
Diversity of bacteria at healthy human conjunctiva.
Qun-Feng Dong, Jennifer M. Brulc, A. Iovieno, B. Bates +7 more
2011Investigative Ophthalmology and Visual Science365 citations Open access
Semantic Scholar
Using the metagenomics RAST server (MG-RAST) for analyzing shotgun metagenomes.
E. Glass, Jared Wilkening, A. Wilke, D. Antonopoulos +1 more
2010Cold Spring Harbor Protocols304 citations
Semantic Scholar
Spatial scale drives patterns in soil bacterial diversity
Sarah L. O'Brien, S. Gibbons, S. Owens, J. Hampton-Marcell +5 more
2016Environmental Microbiology232 citations Open access
Semantic Scholar
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes
Florent E. Angly, D. Willner, Alejandra Prieto-Davó, R. Edwards +24 more
2009PLoS Comput. Biol.210 citations Open access
Semantic Scholar
Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants
E. Claud, Kevin P. Keegan, Jennifer M. Brulc, Lei Lu +5 more
2013Microbiome173 citations Open access
Semantic Scholar
A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community
M. Vital, C. Penton, Qiong Wang, V. Young +9 more
2013Microbiome168 citations Open access
Semantic Scholar
Standard Colonic Lavage Alters the Natural State of Mucosal-Associated Microbiota in the Human Colon
Laura E. Harrell, Yun-Wei Wang, D. Antonopoulos, V. Young +4 more
2012PLoS ONE159 citations Open access
Semantic Scholar
Perturbation of the Small Intestine Microbial Ecology by Streptomycin Alters Pathology in a Salmonella enterica Serovar Typhimurium Murine Model of Infection
C. D. Garner, D. Antonopoulos, B. Wagner, G. Duhamel +4 more
2009Infection and Immunity142 citations Open access
Semantic Scholar
Diversity and Strain Specificity of Plant Cell Wall Degrading Enzymes Revealed by the Draft Genome of Ruminococcus flavefaciens FD-1
Margret E. Berg Miller, D. Antonopoulos, M. T. Rincón, M. Band +12 more
2009PLoS ONE136 citations Open access
Semantic Scholar
Regional Mucosa-Associated Microbiota Determine Physiological Expression of TLR2 and TLR4 in Murine Colon
Yun-Wei Wang, Suzanne Devkota, M. Musch, B. Jabri +4 more
2010PLoS ONE134 citations Open access
Semantic Scholar
Fecal microbiota transplant rescues mice from human pathogen mediated sepsis by restoring systemic immunity
Sangman M. Kim, Jennifer R. Defazio, S. Hyoju, K. Sangani +21 more
2020Nature Communications124 citations Open access
Semantic Scholar
Molecular Glue Discovery: Current and Future Approaches
Jeffrey A. Dewey, C. Delalande, S. Azizi, V. Lu +2 more
2023Journal of Medicinal Chemistry123 citations
Semantic Scholar
PATRIC as a unique resource for studying antimicrobial resistance
D. Antonopoulos, Rida Assaf, R. Aziz, T. Brettin +25 more
2017Briefings Bioinform.109 citations Open access
Semantic Scholar
Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects
S. Huse, V. Young, H. Morrison, D. Antonopoulos +10 more
2014Microbiome105 citations Open access
Semantic Scholar
From genomics to metagenomics.
N. Desai, D. Antonopoulos, J. Gilbert, E. Glass +1 more
2012Current Opinion in Biotechnology97 citations
Semantic Scholar
Interleukin-15 promotes intestinal dysbiosis with butyrate deficiency associated with increased susceptibility to colitis
Marlies Meisel, Toufic Mayassi, H. Fehlner-Peach, J. Koval +10 more
2016The ISME Journal86 citations Open access
Semantic Scholar
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
S. T. Lee, S. Kahn, T. Delmont, A. Shaiber +6 more
2017Microbiome84 citations Open access
Semantic Scholar
Oxalobacter formigenes-Derived Bioactive Factors Stimulate Oxalate Transport by Intestinal Epithelial Cells.
D. Arvans, Yong-Chul Jung, D. Antonopoulos, J. Koval +8 more
2017Journal of the American Society of Nephrology81 citations Open access
Semantic Scholar
Effects of dissimilatory sulfate reduction on FeIII (hydr)oxide reduction and microbial community development
M. Kwon, M. Boyanov, D. Antonopoulos, Jennifer M. Brulc +4 more
201481 citations
Semantic Scholar
Abundance and Diversity of Dockerin-Containing Proteins in the Fiber-Degrading Rumen Bacterium, Ruminococcus flavefaciens FD-1
M. T. Rincón, B. Dassa, H. Flint, A. Travis +9 more
2010PLoS ONE74 citations Open access
Semantic Scholar
The complete genome sequence for putative H₂- and S-oxidizer Candidatus Sulfuricurvum sp., assembled de novo from an aquifer-derived metagenome.
Kim M. Handley, D. Bartels, E. O'Loughlin, K. Williams +10 more
2014Environmental Microbiology72 citations
Semantic Scholar
Mutual reinforcement of pathophysiological host‐microbe interactions in intestinal stasis models
Ketrija Touw, Daina L. Ringus, N. Hubert, Yun-Wei Wang +10 more
2017Physiological Reports65 citations Open access
Semantic Scholar
Impact of Organic Carbon Electron Donors on Microbial Community Development under Iron- and Sulfate-Reducing Conditions
M. Kwon, E. O'Loughlin, M. Boyanov, Jennifer M. Brulc +3 more
2016PLoS ONE61 citations Open access
Semantic Scholar
Polymorphic Immune Mechanisms Regulate Commensal Repertoire
Aly A. Khan, Leonid A. Yurkovetskiy, Kelly O'Grady, Joseph M Pickard +4 more
2019Cell Reports55 citations Open access
Semantic Scholar
Patient-Specific Bacteroides Genome Variants in Pouchitis
J. Vineis, Daina L. Ringus, H. Morrison, T. Delmont +7 more
2016mBio54 citations Open access
Semantic Scholar
Regional differences in colonic mucosa-associated microbiota determine the physiological expression of host heat shock proteins.
Shien Hu, Yun-Wei Wang, L. Lichtenstein, Y. Tao +5 more
2010American Journal of Physiology - Gastrointestinal and Liver Physiology53 citations Open access
Semantic Scholar
Metagenomic Profiling of a Microbial Assemblage Associated with the California Mussel: A Node in Networks of Carbon and Nitrogen Cycling
C. Pfister, Folker Meyer, D. Antonopoulos
2010PLoS ONE51 citations Open access
Semantic Scholar
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis
V. Young, Laura E. H. Raffals, S. Huse, M. Vital +18 more
2013Microbiome47 citations Open access
Semantic Scholar
Laser capture microdissection and metagenomic analysis of intact mucosa-associated microbial communities of human colon
Yun-Wei Wang, D. Antonopoulos, Xiaorong Zhu, Laura E. Harrell +6 more
2010Applied Microbiology and Biotechnology45 citations Open access
Semantic Scholar
Maternal activation of gap genes in the hover fly Episyrphus
Steffen Lemke, S. Busch, D. Antonopoulos, Folker Meyer +2 more
2010Development43 citations
Semantic Scholar
The effects of warming and soil chemistry on bacterial community structure in Arctic tundra soils
Michael P. Ricketts, R. Matamala, J. Jastrow, D. Antonopoulos +4 more
2020Soil Biology and Biochemistry37 citations Open access
Semantic Scholar
Geochemical and microbiological processes contributing to the transformation of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in contaminated aquifer material.
M. Kwon, E. O'Loughlin, D. Antonopoulos, Kevin T. Finneran
2011Chemosphere35 citations
Semantic Scholar
Early-life microbial restitution reduces colitis risk promoted by antibiotic-induced gut dysbiosis in IL-10−/− mice
J. Miyoshi, Sawako Miyoshi, T. Delmont, C. Cham +13 more
2021Gastroenterology34 citations Open access
Semantic Scholar
Insights into the pathogenesis of ulcerative colitis from a murine model of stasis-induced dysbiosis, colonic metaplasia, and genetic susceptibility.
M. Ward, J. Pierre, R. Leal, Yong Huang +14 more
2016American Journal of Physiology - Gastrointestinal and Liver Physiology32 citations Open access
Semantic Scholar
Early transcriptomic changes in the ileal pouch provide insight into the molecular pathogenesis of pouchitis and ulcerative colitis
Yong Huang, S. Dalal, D. Antonopoulos, Nathaniel Hubert +10 more
2017Inflammatory Bowel Diseases29 citations Open access
Semantic Scholar
Parallelized, Aerobic, Single Carbon-Source Enrichments from Different Natural Environments Contain Divergent Microbial Communities
T. Flynn, J. Koval, Stephanie M. Greenwald, S. Owens +2 more
2017Frontiers in Microbiology28 citations Open access
Semantic Scholar
Redox Processes Affecting the Speciation of Technetium, Uranium, Neptunium, and Plutonium in Aquatic and Terrestrial Environments
E. O'Loughlin, M. Boyanov, D. Antonopoulos, K. Kemner
201126 citations
Semantic Scholar
Genetic Deletion of the Bacterial Sensor NOD2 Improves Murine Crohn’s Disease-like Ileitis Independent of Functional Dysbiosis
D. Corridoni, A. R. Palacios, G. di Stefano, L. Di Martino +5 more
2016Mucosal Immunology24 citations Open access
Semantic Scholar
Identification of Polymorphisms of the CSN2 Gene Encoding β-Casein in Greek Local Breeds of Cattle
D. Antonopoulos, Despina Vougiouklaki, G. Laliotis, T. Tsironi +4 more
2021Veterinary Sciences21 citations Open access
Semantic Scholar

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