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A. Wattam · SciRah

Researcher profile · Semantic Scholar

A. Wattam

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A. Wattam — researcher profile on SciRah

h-index: 28
Works: 61
Citations: 14K

Most-cited papers

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
R. Overbeek, Robert Olson, G. Pusch, G. Olsen +10 more
2013Nucleic Acids Res.4,375 citations Open access
Semantic Scholar
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T. Brettin, James J. Davis, T. Disz, R. Edwards +12 more
2015Scientific Reports2,641 citations Open access
Semantic Scholar
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
A. Wattam, James J. Davis, Rida Assaf, S. Boisvert +24 more
2016Nucleic Acids Res.1,561 citations Open access
Semantic Scholar
PATRIC, the bacterial bioinformatics database and analysis resource
A. Wattam, David Abraham, O. Dalay, T. Disz +24 more
2013Nucleic Acids Res.1,198 citations Open access
Semantic Scholar
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Robert Olson, Rida Assaf, T. Brettin, Neal Conrad +36 more
2022Nucleic Acids Res.1,165 citations Open access
Semantic Scholar
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
James J. Davis, A. Wattam, R. Aziz, T. Brettin +30 more
2019Nucleic Acids Res.872 citations Open access
Semantic Scholar
PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species
Joseph J Gillespie, A. Wattam, Stephen A. Cammer, J. Gabbard +21 more
2011Infection and Immunity346 citations Open access
Semantic Scholar
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database
James J. Davis, S. Gerdes, G. Olsen, Robert Olson +5 more
2016Frontiers in Microbiology224 citations Open access
Semantic Scholar
Antimicrobial Resistance Prediction in PATRIC and RAST
James J. Davis, S. Boisvert, T. Brettin, R. Kenyon +9 more
2016Scientific Reports219 citations Open access
Semantic Scholar
A synthesis of bacterial and archaeal phenotypic trait data
Joshua S Madin, D. Nielsen, Maria Brbic, R. Corkrey +25 more
2020Scientific Data145 citations Open access
Semantic Scholar
Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle
A. Wattam, K. Williams, E. Snyder, N. Almeida +18 more
2009Journal of Bacteriology125 citations Open access
Semantic Scholar
Comparative Phylogenomics and Evolution of the Brucellae Reveal a Path to Virulence
A. Wattam, J. Foster, S. Mane, S. Beckstrom-Sternberg +11 more
2013Journal of Bacteriology120 citations Open access
Semantic Scholar
PATRIC as a unique resource for studying antimicrobial resistance
D. Antonopoulos, Rida Assaf, R. Aziz, T. Brettin +25 more
2017Briefings Bioinform.109 citations Open access
Semantic Scholar
Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species
A. Oliveira, L. C. Oliveira, Flavia F. Aburjaile, L. Benevides +8 more
2017Frontiers in Microbiology109 citations Open access
Semantic Scholar
Assembly, Annotation, and Comparative Genomics in PATRIC, the All Bacterial Bioinformatics Resource Center.
A. Wattam, T. Brettin, James J. Davis, S. Gerdes +12 more
2018Methods in molecular biology93 citations
Semantic Scholar
Curation, integration and visualization of bacterial virulence factors in PATRIC
Chunhong Mao, David Abraham, A. Wattam, M. Wilson +3 more
2014Bioinform.85 citations Open access
Semantic Scholar
Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems
Madangchanok Imchen, Ranjith Kumavath, D. Barh, A. Vaz +5 more
2018Scientific Reports75 citations Open access
Semantic Scholar
Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts
S. Al Dahouk, Stephan Köhler, A. Occhialini, María P. Jiménez De Bagüés +11 more
2017Scientific Reports74 citations Open access
Semantic Scholar
Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems
Madangchanok Imchen, Ranjith Kumavath, D. Barh, V. Azevedo +3 more
2017Scientific Reports69 citations Open access
Semantic Scholar
INAUGURAL ARTICLE by a Recently Elected Academy Member:Noncanonical SMC protein in Mycobacterium smegmatis restricts maintenance of Mycobacterium fortuitum plasmids
Michael W. Panas, P. Jain, Hui Yang, Shimontini Mitra +4 more
201459 citations Open access
Semantic Scholar
Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway
A. Wattam, T. Inzana, K. Williams, S. Mane +16 more
2012mBio53 citations Open access
Semantic Scholar
Peptide nucleic acids inhibit growth of Brucella suis in pure culture and in infected murine macrophages
P. Rajasekaran, J. Alexander, M. Seleem, Neeta Jain +4 more
2013International Journal of Antimicrobial Agents42 citations Open access
Semantic Scholar
Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing
Rajagopalan Saranathan, M. Levi, A. Wattam, Adel Malek +5 more
2019Journal of Clinical Microbiology35 citations Open access
Semantic Scholar
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes
Margo VanOeffelen, M. Nguyen, D. Aytan-Aktug, T. Brettin +13 more
2021Briefings Bioinform.33 citations Open access
Semantic Scholar
Identification and molecular epidemiology of methicillin resistant Staphylococcus pseudintermedius strains isolated from canine clinical samples in Argentina
P. Gagetti, A. Wattam, G. Giacoboni, A. D. de Paulis +3 more
2019BMC Veterinary Research33 citations Open access
Semantic Scholar
The Complete Genome Sequence of the Emerging Pathogen Mycobacterium haemophilum Explains Its Unique Culture Requirements
Joann Tufariello, C. Kerantzas, C. Vilchèze, R. Calder +10 more
2015mBio29 citations Open access
Semantic Scholar
Transcriptome profile of Corynebacterium pseudotuberculosis in response to iron limitation
I. Ibraim, M. Parise, D. Parise, M. Sfeir +8 more
2019BMC Genomics28 citations Open access
Semantic Scholar
Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo
M. Viana, H. Figueiredo, R. Ramos, L. Guimarães +7 more
2017PLoS ONE28 citations Open access
Semantic Scholar
Comparative Genomic Analysis at the PATRIC, A Bioinformatic Resource Center
A. Wattam, J. Gabbard, M. Shukla, B. Sobral
2014Methods in molecular biology28 citations
Semantic Scholar
PIML: the Pathogen Information Markup Language
Y. He, R. R. Vines, A. Wattam, Georgiy V. Abramochkin +3 more
2005Bioinform.25 citations
Semantic Scholar
Comparative Genomics for Prokaryotes.
J. Setubal, N. Almeida, A. Wattam
2018Methods in molecular biology24 citations
Semantic Scholar
Transcriptome-Wide Identification of Hfq-Associated RNAs in Brucella suis by Deep Sequencing
B. Saadeh, Clayton C. Caswell, Yanjie Chao, P. Berta +3 more
2015Journal of Bacteriology23 citations Open access
Semantic Scholar
BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration.
M. Shukla, A. Wattam, Alberto Aleman, R. Bhattacharya +39 more
2025Nucleic Acids Research21 citations Open access
Semantic Scholar
An important step forward in the genetic manipulation of mosquito vectors of human disease.
M. G. Kidwell, A. Wattam
1998Proceedings of the National Academy of Sciences of the United States of America14 citations Open access
Semantic Scholar
Whole genome sequence analysis of NDM-1, CMY-4, and SHV-12 coproducing Salmonella enterica serovar Typhimurium isolated from a case of fatal burn wound infection
K. Banerjee, Priyadharshini Sekar, P. Krishnan, A. Wattam +3 more
2018Infection and Drug Resistance13 citations Open access
Semantic Scholar
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research
A. Warren, C. Aurrecoechea, B. Brunk, Prerak T. Desai +15 more
2014bioRxiv13 citations Open access
Semantic Scholar
Characterization of the First mecA-Positive Multidrug-Resistant Staphylococcus pseudintermedius Isolated from an Argentinian Patient
P. Gagetti, L. Errecalde, A. Wattam, D. De Belder +3 more
2020Microbial Drug Resistance12 citations Open access
Semantic Scholar
Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance.
A. Wattam, Nicole Bowers, Thomas S. Brettin, Neal Conrad +16 more
2024Methods in molecular biology11 citations
Semantic Scholar
Analysis of Corynebacterium silvaticum genomes from Portugal reveals a single cluster and a clade suggested to produce diphtheria toxin
M. Viana, José Henrique Galdino, Rodrigo Profeta, Manuela Oliveira +5 more
2023PeerJ10 citations Open access
Semantic Scholar
Taxonomic classification of strain PO100/5 shows a broader geographic distribution and genetic markers of the recently described Corynebacterium silvaticum
M. Viana, Rodrigo Profeta, Alessandra Lima da Silva, R. Hurtado +13 more
2020bioRxiv10 citations Open access
Semantic Scholar
Rapidly evolving changes and gene loss associated with host switching in Corynebacterium pseudotuberculosis
M. Viana, A. Sahm, Aristóteles Góes, H. Figueiredo +2 more
2018PLoS ONE9 citations Open access
Semantic Scholar
Author Correction: Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems
Madangchanok Imchen, Ranjith Kumavath, D. Barh, V. Azevedo +3 more
2018Scientific Reports8 citations Open access
Semantic Scholar
Phenotype-Based Threat Assessment
Jing Yang, Mohammed Eslami, Yi-Pei Chen, M. Das +23 more
2022Proceedings of the National Academy of Sciences of the United States of America6 citations Open access
Semantic Scholar
Genome Sequences of Three Brucella canis Strains Isolated from Humans and a Dog
M. Viana, A. Wattam, Dhwani Govil Batra, S. Boisvert +6 more
2017Genome Announcements6 citations Open access
Semantic Scholar
Enabling comparative modeling of closely related genomes: example genus Brucella
José P. Faria, J. Edirisinghe, James J. Davis, T. Disz +8 more
20143 Biotech6 citations Open access
Semantic Scholar
Evidence of episodic positive selection in Corynebacterium diphtheriae complex of species and its implementations in identification of drug and vaccine targets
M. V. Canário Viana, Rodrigo Profeta, J. C. Cerqueira, A. Wattam +3 more
2022PeerJ5 citations Open access
Semantic Scholar
Panaconda: Application of pan-synteny graph models to genome content analysis
A. Warren, James J. Davis, A. Wattam, D. Machi +2 more
2017bioRxiv5 citations Open access
Semantic Scholar
Isolation of Brucella inopinata from a White’s tree frog (Litoria caerulea): pose exotic frogs a potential risk to human health?
H. Scholz, K. Heckers, S. Appelt, Dorothee Geier-Dömling +2 more
2023Frontiers in Microbiology4 citations Open access
Semantic Scholar
Identification and Characterization of Mycobacterial Species Using Whole-Genome Sequences.
Marco A. Riojas, Andrew M. Frank, Samuel R. Greenfield, Stephen P. King +4 more
2021Methods in molecular biology3 citations
Semantic Scholar
Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems
Madangchanok Imchen, Ranjith Kumavath, D. Barh, A. Vaz +5 more
2018Scientific Reports3 citations Open access
Semantic Scholar

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