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P. Auvinen · SciRah

Researcher profile · Semantic Scholar

P. Auvinen

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P. Auvinen — researcher profile on SciRah

h-index: 61
Works: 213
Citations: 11K

Most-cited papers

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch
J. Salojärvi, Olli-Pekka Smolander, K. Nieminen, Sitaram Rajaraman +81 more
2017Nature Genetics250 citations Open access
Semantic Scholar
Paneth cell produced Notum attenuates regeneration of aged intestinal epithelium
Nalle Pentinmikko, Sharif Iqbal, M. Mana, S. Andersson +20 more
2019Nature246 citations Open access
Semantic Scholar
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera
Virpi Ahola, Rainer Lehtonen, P. Somervuo, L. Salmela +43 more
2014Nature Communications224 citations Open access
Semantic Scholar
Cytokinin and Auxin Display Distinct but Interconnected Distribution and Signaling Profiles to Stimulate Cambial Activity.
J. Immanen, K. Nieminen, Olli-Pekka Smolander, M. Kojima +11 more
2016Current Biology195 citations Open access
Semantic Scholar
Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation
K. Furuta, S. Yadav, Satu J. Lehesranta, I. Belevich +15 more
2014Science193 citations
Semantic Scholar
Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis
Teija Ojala, M. Kankainen, J. Castro, N. Cerca +5 more
2014BMC Genomics128 citations Open access
Semantic Scholar
Significant disparities in allergy prevalence and microbiota between the young people in Finnish and Russian Karelia
L. Ruokolainen, L. Paalanen, Antti Karkman, T. Laatikainen +14 more
2017Clinical and Experimental Allergy119 citations
Semantic Scholar
Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose
Jaana Kuuskeri, Mari Häkkinen, P. Laine, Olli-Pekka Smolander +6 more
2016Biotechnology for Biofuels119 citations Open access
Semantic Scholar
Genome-scale study reveals reduced metabolic adaptability in patients with non-alcoholic fatty liver disease
T. Hyötyläinen, Livnat Jerby, Elina M. Petäjä, I. Mattila +6 more
2016Nature Communications117 citations Open access
Semantic Scholar
The Receptor-like Pseudokinase GHR1 Is Required for Stomatal Closure[OPEN]
Maija Sierla, Hanna Hõrak, Kirk Overmyer, C. Waszczak +16 more
2018The Plant Cell113 citations Open access
Semantic Scholar
Bile microbiota in primary sclerosing cholangitis: Impact on disease progression and development of biliary dysplasia
Pedro A. B. Pereira, V. Aho, J. Arola, S. Boyd +4 more
2017PLoS ONE94 citations Open access
Semantic Scholar
Gut microbiome in gestational diabetes: a cross‐sectional study of mothers and offspring 5 years postpartum
Sayyid Hasan, V. Aho, Pedro A. B. Pereira, L. Paulin +3 more
2018Acta Obstetricia et Gynecologica Scandinavica71 citations Open access
Semantic Scholar
The complexity of titin splicing pattern in human adult skeletal muscles
M. Savarese, P. Jonson, S. Huovinen, L. Paulin +3 more
2018Skeletal Muscle68 citations Open access
Semantic Scholar
Food Spoilage-Associated Leuconostoc, Lactococcus, and Lactobacillus Species Display Different Survival Strategies in Response to Competition
Margarita Andreevskaya, E. Jääskeläinen, Per Johansson, A. Ylinen +3 more
2018Applied and Environmental Microbiology68 citations Open access
Semantic Scholar
Alternative oxidase‐mediated respiration prevents lethal mitochondrial cardiomyopathy
Jayasimman Rajendran, J. Purhonen, Saara Tegelberg, Olli-Pekka Smolander +11 more
2018EMBO Molecular Medicine65 citations Open access
Semantic Scholar
Metagenomic and metatranscriptomic analysis of the microbial community in Swiss-type Maasdam cheese during ripening.
I. Duru, P. Laine, Margarita Andreevskaya, L. Paulin +4 more
2018Journal of food microbiology63 citations Open access
Semantic Scholar
Isotretinoin and lymecycline treatments modify the skin microbiota in acne
Hanna-Leena Kelhälä, V. Aho, N. Fyhrquist, Pedro A. B. Pereira +6 more
2018Experimental Dermatology62 citations Open access
Semantic Scholar
Comparative Genomics and Characterization of Hybrid Shigatoxigenic and Enterotoxigenic Escherichia coli (STEC/ETEC) Strains
O. Nyholm, Jani Halkilahti, G. Wiklund, Uche Okeke +4 more
2015PLoS ONE62 citations Open access
Semantic Scholar
Developmental Changes in Scots Pine Transcriptome during Heartwood Formation1[OPEN]
Kean-Jin Lim, T. Paasela, A. Harju, M. Venäläinen +4 more
2016Plant Physiology60 citations Open access
Semantic Scholar
Genetic Control of Myelin Plasticity after Chronic Psychosocial Stress
M. Laine, K. Trontti, Z. Misiewicz, E. Sokołowska +12 more
2018eNeuro56 citations Open access
Semantic Scholar
BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing
P. Somervuo, Patrik Koskinen, Peng Mei, Liisa Holm +2 more
2018BMC Bioinformatics52 citations Open access
Semantic Scholar
The microbiome of the human lower airways: a next generation sequencing perspective
V. Aho, Pedro A. B. Pereira, T. Haahtela, R. Pawankar +2 more
2015The World Allergy Organization Journal52 citations Open access
Semantic Scholar
Multi-omics analysis identifies mitochondrial pathways associated with anxiety-related behavior
Z. Misiewicz, S. Iurato, N. Kulesskaya, Laura Salminen +19 more
2019PLoS Genetics48 citations Open access
Semantic Scholar
Dual-light photodynamic therapy administered daily provides a sustained antibacterial effect on biofilm and prevents Streptococcus mutans adaptation
Sakari Nikinmaa, H. Alapulli, P. Auvinen, M. Vaara +5 more
2020bioRxiv44 citations Open access
Semantic Scholar
Network Analysis Reveals Similar Transcriptomic Responses to Intrinsic Properties of Carbon Nanomaterials in Vitro and in Vivo.
P. Kinaret, V. Marwah, V. Fortino, Marit Ilves +6 more
2017ACS Nano40 citations Open access
Semantic Scholar
NOGO-A/RTN4A and NOGO-B/RTN4B are simultaneously expressed in epithelial, fibroblast and neuronal cells and maintain ER morphology
Olli Rämö, Darshan Kumar, E. Gucciardo, Merja Joensuu +7 more
2016Scientific Reports39 citations Open access
Semantic Scholar
High-pressure processing-induced transcriptome response during recovery of Listeria monocytogenes
I. Duru, F. I. Bucur, Margarita Andreevskaya, B. Nikparvar +12 more
2021BMC Genomics37 citations Open access
Semantic Scholar
Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria
I. Duru, A. Ylinen, S. Belanov, A. Pulido +2 more
2020BMC Genomics36 citations Open access
Semantic Scholar
Skin microbiome in melanomas and melanocytic nevi
A. Salava, V. Aho, Pedro A. B. Pereira, Kaisa Koskinen +3 more
2016EJD. European journal of dermatology35 citations
Semantic Scholar
Genome Sequence and Transcriptome Analysis of Meat-Spoilage-Associated Lactic Acid Bacterium Lactococcus piscium MKFS47
Margarita Andreevskaya, Per Johansson, P. Laine, Olli-Pekka Smolander +6 more
2015Applied and Environmental Microbiology34 citations Open access
Semantic Scholar
Skin microbiome in cutaneous T cell lymphoma by 16S and whole genome shotgun sequencing.
A. Salava, P. Deptula, Annina Lyyski, P. Laine +5 more
2019Journal of Investigative Dermatology33 citations Open access
Semantic Scholar
Expression of BKV and JCV encoded microRNA in human cerebrospinal fluid, plasma and urine.
T. Pietilä, Maaret Nummi, P. Auvinen, L. Mannonen +1 more
2015Journal of Clinical Virology32 citations
Semantic Scholar
Complete genome sequence of Propionibacterium freudenreichii DSM 20271T
Patrik Koskinen, P. Deptula, Olli-Pekka Smolander, Fitsum Tamene +6 more
2015Standards in Genomic Sciences32 citations Open access
Semantic Scholar
Lactobacillus oligofermentans glucose, ribose and xylose transcriptomes show higher similarity between glucose and xylose catabolism-induced responses in the early exponential growth phase
Margarita Andreevskaya, Per Johansson, E. Jääskeläinen, T. Ramo +4 more
2016BMC Genomics31 citations Open access
Semantic Scholar
Flight‐induced changes in gene expression in the Glanville fritillary butterfly
J. Kvist, A. L. K. Mattila, P. Somervuo, Virpi Ahola +12 more
2015Molecular Ecology31 citations
Semantic Scholar
SARS‐CoV‐2 variant with mutations in N gene affecting detection by widely used PCR primers
P. Laine, Hanna Nihtilä, Ella Mustanoja, Annina Lyyski +6 more
2021Journal of Medical Virology30 citations Open access
Semantic Scholar
Bracketing phenogenotypic limits of mammalian hybridization
Y. Savriama, Mia Valtonen, Juhana I. Kammonen, P. Rastas +11 more
2018Royal Society Open Science30 citations Open access
Semantic Scholar
Functional genomics provides insights into the role of Propionibacterium freudenreichii ssp. shermanii JS in cheese ripening.
Teija Ojala, P. Laine, T. Ahlroos, J. Tanskanen +6 more
2017Journal of food microbiology27 citations
Semantic Scholar
Seasonal patterns of bacterial communities in the coastal brackish sediments of the Gulf of Finland, Baltic Sea
Adrien Vetterli, K. Hyytiäinen, Minttu Ahjos, P. Auvinen +3 more
201527 citations
Semantic Scholar
Indocyanine Green-Assisted and LED-Light-Activated Antibacterial Photodynamic Therapy Reduces Dental Plaque
Sakari Nikinmaa, Niina Moilanen, T. Sorsa, J. Rantala +6 more
2021Dental journal26 citations Open access
Semantic Scholar
Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi
Marika Mäkinen, Jaana Kuuskeri, P. Laine, Olli-Pekka Smolander +6 more
2019BMC Genomics25 citations Open access
Semantic Scholar
Fragmented habitat compensates for the adverse effects of genetic bottleneck
Ari Löytynoja, P. Rastas, Mia Valtonen, Juhana I. Kammonen +5 more
2022bioRxiv24 citations Open access
Semantic Scholar
De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii
P. Deptula, P. Laine, R. Roberts, Olli-Pekka Smolander +7 more
2017BMC Genomics24 citations Open access
Semantic Scholar
Loss of cutaneous microbial diversity during first 3 weeks of life in very low birthweight infants
A. Salava, V. Aho, E. Lybeck, Pedro A. B. Pereira +6 more
2017Experimental Dermatology23 citations Open access
Semantic Scholar
BK polyomavirus microRNA expression and sequence variation in polyomavirus-associated nephropathy.
E. Virtanen, Hannele Seppälä, I. Helanterä, P. Laine +5 more
2018Journal of Clinical Virology22 citations Open access
Semantic Scholar
Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine- and Human-Associated Staphylococcus epidermidis Strains.
K. Savijoki, A. Iivanainen, Pia Siljamäki, P. Laine +14 more
2014Journal of Proteome Research21 citations
Semantic Scholar
Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing
I. Duru, Margarita Andreevskaya, P. Laine, Tone Mari Rode +8 more
2020BMC Genomics20 citations Open access
Semantic Scholar
Microbiomes in the Context of Refrigerated Raw Meat Spoilage
Per Johansson, E. Jääskeläinen, Timo Nieminen, J. Hultman +2 more
202019 citations Open access
Semantic Scholar
HMGB4 is expressed by neuronal cells and affects the expression of genes involved in neural differentiation
A. Rouhiainen, Xiang Zhao, P. Vanttola, Kui Qian +9 more
2016Scientific Reports19 citations Open access
Semantic Scholar
Microbial Communities of Cladonia Lichens and Their Biosynthetic Gene Clusters Potentially Encoding Natural Products
T. K. Shishido, M. Wahlsten, P. Laine, J. Rikkinen +2 more
2021Microorganisms18 citations Open access
Semantic Scholar

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