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Antti Karkman · SciRah

Researcher profile · Semantic Scholar

Antti Karkman

University of Helsinki

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Antti Karkman — researcher profile on SciRah

ORCID iD 0000-0003-0983-3319Homepage

h-index: 24
Works: 47
Citations: 5,076

Most-cited papers

Antibiotic-Resistance Genes in Waste Water.
Antti Karkman, Thi Thuy Do, F. Walsh, M. Virta
2017Trends in Microbiology819 citations Open access
Semantic Scholar
Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements
Katariina M. M. Pärnänen, Antti Karkman, J. Hultman, C. Lyra +8 more
2018Nature Communications618 citations Open access
Semantic Scholar
Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments
Antti Karkman, Katariina M. M. Pärnänen, D. G. Joakim Larsson
2019Nature Communications542 citations Open access
Semantic Scholar
Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence
Katariina M. M. Pärnänen, Carlos Narciso-da-Rocha, D. Kneis, T. Berendonk +22 more
2019Science Advances509 citations Open access
Semantic Scholar
Tetracycline resistance genes persist at aquaculture farms in the absence of selection pressure.
Manu V. Tamminen, Antti Karkman, Andres Lõhmus, Windi Muziasari +4 more
2011Environmental Science and Technology319 citations
Semantic Scholar
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant.
Antti Karkman, T. Johnson, C. Lyra, Robert D. Stedtfeld +3 more
2016FEMS Microbiology Ecology210 citations Open access
Semantic Scholar
Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent
J. Hultman, Manu V. Tamminen, Katariina M. M. Pärnänen, Johannes Cairns +2 more
2018FEMS Microbiology Ecology198 citations Open access
Semantic Scholar
Aquaculture changes the proile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments
Windi Muziasari, Katariina M. M. Pärnänen, T. Johnson, C. Lyra +5 more
2016190 citations
Semantic Scholar
Abundances of Tetracycline, Sulphonamide and Beta-Lactam Antibiotic Resistance Genes in Conventional Wastewater Treatment Plants (WWTPs) with Different Waste Load
M. Laht, Antti Karkman, Veiko Voolaid, C. Ritz +3 more
2014PLoS ONE176 citations Open access
Semantic Scholar
Influence of Manure Application on the Environmental Resistome under Finnish Agricultural Practice with Restricted Antibiotic Use.
J. Muurinen, Robert D. Stedtfeld, Antti Karkman, Katariina M. M. Pärnänen +2 more
2017Environmental Science and Technology172 citations
Semantic Scholar
Seasonality of antibiotic prescriptions for outpatients and resistance genes in sewers and wastewater treatment plant outflow.
S. Caucci, Antti Karkman, Damiano Cacace, M. Rybicki +5 more
2016FEMS Microbiology Ecology144 citations Open access
Semantic Scholar
Patterns in the skin microbiota differ in children and teenagers between rural and urban environments
J. Lehtimäki, Antti Karkman, T. Laatikainen, L. Paalanen +4 more
2017Scientific Reports127 citations Open access
Semantic Scholar
Sulphonamide and Trimethoprim Resistance Genes Persist in Sediments at Baltic Sea Aquaculture Farms but Are Not Detected in the Surrounding Environment
Windi Muziasari, S. Managaki, Katariina M. M. Pärnänen, Antti Karkman +4 more
2014PLoS ONE123 citations Open access
Semantic Scholar
Significant disparities in allergy prevalence and microbiota between the young people in Finnish and Russian Karelia
L. Ruokolainen, L. Paalanen, Antti Karkman, T. Laatikainen +14 more
2017Clinical and Experimental Allergy119 citations
Semantic Scholar
The ecology of human microbiota: dynamics and diversity in health and disease
Antti Karkman, J. Lehtimäki, L. Ruokolainen
2017Annals of the New York Academy of Sciences109 citations
Semantic Scholar
“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
M. Fondi, Antti Karkman, Manu V. Tamminen, Emanuele Bosi +4 more
2016Genome Biology and Evolution94 citations Open access
Semantic Scholar
Cold temperature decreases bacterial species richness in nitrogen‐removing bioreactors treating inorganic mine waters
Antti Karkman, K. Mattila, Manu V. Tamminen, M. Virta
2011Biotechnology and Bioengineering66 citations
Semantic Scholar
Predicting clinical resistance prevalence using sewage metagenomic data
Antti Karkman, F. Berglund, C. Flach, E. Kristiansson +1 more
2020Communications Biology63 citations Open access
Semantic Scholar
Evaluating the mobility potential of antibiotic resistance genes in environmental resistomes without metagenomics
Katariina M. M. Pärnänen, Antti Karkman, Manu V. Tamminen, C. Lyra +3 more
2016Scientific Reports57 citations Open access
Semantic Scholar
Differences in bacterial community composition in Baltic Sea sediment in response to fish farming
Manu V. Tamminen, Antti Karkman, J. Corander, L. Paulin +1 more
201154 citations
Semantic Scholar
Metagenomic assemblies tend to break around antibiotic resistance genes
A. Abramova, Antti Karkman, J. Bengtsson-Palme
2023bioRxiv48 citations Open access
Semantic Scholar
Holistic View on Health: Two Protective Layers of Biodiversity
L. Ruokolainen, J. Lehtimäki, Antti Karkman, T. Haahtela +2 more
2017Annales Zoologici Fennici46 citations
Semantic Scholar
Long-term application of Swedish sewage sludge on farmland does not cause clear changes in the soil bacterial resistome.
Carolin Rutgersson, S. Ebmeyer, S. B. Lassen, Antti Karkman +5 more
2020Environment International45 citations Open access
Semantic Scholar
Metagenomic Analysis of the Abundance and Composition of Antibiotic Resistance Genes in Hospital Wastewater in Benin, Burkina Faso, and Finland
M. Markkanen, K. Haukka, Katariina M. M. Pärnänen, V. Dougnon +7 more
2023Msphere44 citations Open access
Semantic Scholar
Immune‐microbiota interaction in Finnish and Russian Karelia young people with high and low allergy prevalence
L. Ruokolainen, N. Fyhrquist, T. Laatikainen, P. Auvinen +18 more
2020Clinical and Experimental Allergy24 citations Open access
Semantic Scholar
Discovery of bacterial polyhydroxyalkanoate synthase (PhaC)-encoding genes from seasonal Baltic Sea ice and cold estuarine waters
Katariina M. M. Pärnänen, Antti Karkman, M. Virta, E. Eronen-Rasimus +1 more
2014Extremophiles24 citations
Semantic Scholar
Contrasting microbiotas between Finnish and Estonian infants: Exposure to Acinetobacter may contribute to the allergy gap
L. Ruokolainen, Anna Parkkola, Antti Karkman, H. Sinkko +9 more
2020Allergy. European Journal of Allergy and Clinical Immunology21 citations Open access
Semantic Scholar
An active bacterial community linked to high chl-a concentrations in Antarctic winter-pack ice and evidence for the development of an anaerobic sea-ice bacterial community
E. Eronen-Rasimus, Anne-Mari Luhtanen, Janne-Markus Rintala, B. Delille +3 more
2017The ISME Journal21 citations Open access
Semantic Scholar
Enterococcus rivorum sp. nov., from water of pristine brooks.
R. M. Niemi, Tuula Ollinkangas, L. Paulin, P. Švec +4 more
2012International Journal of Systematic and Evolutionary Microbiology19 citations Open access
Semantic Scholar
Cyanobacteria as a Source for Novel Anti-Leukemic Compounds.
Anu Humisto, L. Herfindal, J. Jokela, Antti Karkman +3 more
2015Current Pharmaceutical Biotechnology15 citations
Semantic Scholar
Nature‐oriented daycare diversifies skin microbiota in children—No robust association with allergies
J. Lehtimäki, T. Laatikainen, Antti Karkman, L. V. von Hertzen +3 more
2018Pediatric Allergy and Immunology13 citations
Semantic Scholar
Bacterial communities in Arctic first-year drift ice during the winter/spring transition.
E. Eronen-Rasimus, J. Piiparinen, Antti Karkman, C. Lyra +2 more
2016Environmental Microbiology Reports11 citations
Semantic Scholar
Bacterial hosts of clinically significant beta-lactamase genes in Croatian wastewaters
Svjetlana Dekić Rozman, A. Puljko, Antti Karkman, M. Virta +1 more
2024FEMS Microbiology Ecology9 citations Open access
Semantic Scholar
Interplay between skin microbiota and immunity in atopic individuals
Matilda Riskumäki, Ioannis Tessas, N. Ottman, Alina Suomalainen +10 more
2021Allergy. European Journal of Allergy and Clinical Immunology8 citations Open access
Semantic Scholar
High Throughput Method for Analyzing Antibiotic Resistance Genes in Wastewater Treatment Plants
J. Muurinen, Antti Karkman, M. Virta
20177 citations
Semantic Scholar
Fish farming affects the abundance and diversity of the mercury resistance gene merA in marine sediments.
L. Pitkänen, Manu V. Tamminen, A. Hynninen, Antti Karkman +3 more
2011Microbes and Environments7 citations Open access
Semantic Scholar
Sulfonamide resistance gene sul4 is hosted by common wastewater sludge bacteria and found in various newly described contexts and hosts
M. Markkanen, Denise Pezzutto, M. Virta, Antti Karkman
2025bioRxiv6 citations Open access
Semantic Scholar
Towards One Health action for addressing antimicrobial resistance in the age of polycrisis
I. Keenum, T. Berendonk, Jonas Bonnedahl, Eddie Cytryn +35 more
2026Nature Sustainability4 citations Open access
Semantic Scholar
Metagenomic analysis of antimicrobial resistance genes in wastewaters in Benin and Burkina Faso indicates a serious health risk from untreated hospital wastewaters in low-income countries
M. Markkanen, K. Haukka, K. PaÌrnaÌnen, V. Dougnon +7 more
2021medRxiv4 citations Open access
Semantic Scholar
Use of sequence barcodes for tracking horizontal gene transfer of antimicrobial resistance genes in a microbial community
Veera Partanen, Svjetlana Dekić Rozman, Antti Karkman, J. Muurinen +2 more
2025ISME Communications3 citations Open access
Semantic Scholar
Long-read metagenomics and methylation-based binning support the discovery of antibiotic resistance gene–host associations in complex communities
M. Markkanen, Heidi Putkuri, D. Kičiatovas, Ville Mustonen +2 more
2026Genome Biology2 citations Open access
Semantic Scholar
Long-read metagenomics and methylation-based binning allow the description of the emerging high-risk antibiotic resistance genes and their hidden hosts in complex communities
M. Markkanen, H. Putkuri, D. Kičiatovas, V. Mustonen +2 more
2026medRxiv0 citations Open access
Semantic Scholar
Emerging food- and waterborne pathogen Arcobacter in wastewater: diversity and antibiotic resistance
Svjetlana Dekić Rozman, Antti Karkman, Levi Tomitšik, M. Virta
2026Microbiology spectrum0 citations Open access
Semantic Scholar
Ympäristön vaikutus mikrobilääkeresistenssiin
Antti Karkman, Marko Virta
20170 citations
Semantic Scholar
High-throughput quantiication of antibiotic resistance genes from an urban wastewater treatment plant
Antti Karkman, T. Johnson, C. Lyra, Robert D. Stedtfeld +3 more
20160 citations
Semantic Scholar
Antibiotic resistance in human impacted environments
Antti Karkman
20150 citations
Semantic Scholar
Discovery of bacterial polyhydroxyalkanoate synthase (PhaC)-encoding genes from seasonal Baltic Sea ice and cold estuarine waters
Katariina M. M. Pärnänen, Antti Karkman, M. Virta, E. Eronen-Rasimus +1 more
2014Extremophiles0 citations
Semantic Scholar

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