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C. Ouzounis · SciRah

Researcher profile · Semantic Scholar

C. Ouzounis

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C. Ouzounis — researcher profile on SciRah

h-index: 62
Works: 204
Citations: 16K

Most-cited papers

Are splicing mutations the most frequent cause of hereditary disease?
N. López-Bigas, B. Audit, C. Ouzounis, Genís Parra +1 more
2005FEBS Letters417 citations
Semantic Scholar
Stereotyped patterns of somatic hypermutation in subsets of patients with chronic lymphocytic leukemia: implications for the role of antigen selection in leukemogenesis.
F. Murray, N. Darzentas, A. Hadzidimitriou, G. Tobin +16 more
2007Blood369 citations Open access
Semantic Scholar
The net of life: reconstructing the microbial phylogenetic network.
V. Kunin, L. Goldovsky, N. Darzentas, C. Ouzounis
2005Genome Research275 citations Open access
Semantic Scholar
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
N. Kyrpides, P. Hugenholtz, J. Eisen, T. Woyke +60 more
2014PLoS Biology208 citations Open access
Semantic Scholar
DisProt: intrinsic protein disorder annotation in 2020
András Hatos, Borbála Hajdu-Soltész, A. Monzon, Nicolás Palopoli +60 more
2019Nucleic Acids Res.206 citations Open access
Semantic Scholar
Emergence, development and diversification of the TGF-β signalling pathway within the animal kingdom
L. Huminiecki, L. Goldovsky, Shiri Freilich, A. Moustakas +2 more
2009BMC Evolutionary Biology186 citations Open access
Semantic Scholar
A minimal estimate for the gene content of the last universal common ancestor--exobiology from a terrestrial perspective.
C. Ouzounis, V. Kunin, N. Darzentas, L. Goldovsky
2006Research in Microbiology156 citations Open access
Semantic Scholar
Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes
N. Tiffin, E. Adie, Frances S. Turner, H. Brunner +10 more
2006Nucleic Acids Research155 citations Open access
Semantic Scholar
HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
A. Azad, G. Pavlopoulos, C. Ouzounis, N. Kyrpides +1 more
2018Nucleic Acids Research142 citations Open access
Semantic Scholar
Structural and functional properties of genes involved in human cancer
S. Furney, D. Higgins, C. Ouzounis, N. López-Bigas
2006BMC Genomics99 citations Open access
Semantic Scholar
Disentangling the complexity of low complexity proteins
Pablo Mier, L. Paladin, S. Tamana, S. Petrosian +14 more
2019Briefings Bioinform.96 citations Open access
Semantic Scholar
An updated metabolic view of the Bacillus subtilis 168 genome.
E. Belda, A. Sękowska, François Le Fèvre, A. Morgat +5 more
2013Microbiology86 citations Open access
Semantic Scholar
Percolation of annotation errors through hierarchically structured protein sequence databases.
W. Gilks, B. Audit, D. De Angelis, S. Tsoka +1 more
2005Mathematical Biosciences81 citations
Semantic Scholar
Tumorigenic Properties of Iron Regulatory Protein 2 (IRP2) Mediated by Its Specific 73-Amino Acids Insert
Carmen Maffettone, Guo-Hua Chen, I. Drozdov, C. Ouzounis +1 more
2010PLoS ONE75 citations Open access
Semantic Scholar
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation
F. Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos +57 more
2021Nucleic Acids Res.72 citations Open access
Semantic Scholar
Rise and Demise of Bioinformatics? Promise and Progress
C. Ouzounis
2012PLoS Comput. Biol.71 citations Open access
Semantic Scholar
Transcriptome classification reveals molecular subtypes in psoriasis
C. Ainali, N. Valeyev, G. Perera, Andrew Williams +4 more
2012BMC Genomics70 citations Open access
Semantic Scholar
A Systems Model for Immune Cell Interactions Unravels the Mechanism of Inflammation in Human Skin
N. Valeyev, C. Hundhausen, Y. Umezawa, N. Kotov +6 more
2010PLoS Comput. Biol.69 citations Open access
Semantic Scholar
Sequence-based feature prediction and annotation of proteins
A. Juncker, L. Jensen, Andrea Pierleoni, Andreas Bernsel +7 more
2009Genome Biology64 citations Open access
Semantic Scholar
Measuring genome conservation across taxa: divided strains and united kingdoms
V. Kunin, D. Ahrén, L. Goldovsky, P. Janssen +1 more
2005Nucleic Acids Research62 citations Open access
Semantic Scholar
BioLayout(Java): versatile network visualisation of structural and functional relationships.
L. Goldovsky, I. Cases, A. Enright, C. Ouzounis
2005Applied Bioinformatics62 citations
Semantic Scholar
Highly consistent patterns for inherited human diseases at the molecular level
N. López-Bigas, B. Blencowe, C. Ouzounis
2006Bioinform.61 citations Open access
Semantic Scholar
Toward unrestricted use of public genomic data
R. Amann, S. Baichoo, B. Blencowe, P. Bork +46 more
2019Science56 citations Open access
Semantic Scholar
No wisdom in the crowd: genome annotation in the era of big data – current status and future prospects
A. Danchin, C. Ouzounis, Taku A. Tokuyasu, Jean-Daniel Zucker
2018Microbial Biotechnology56 citations Open access
Semantic Scholar
Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment
S. Baichoo, C. Ouzounis
2017Biosyst.55 citations
Semantic Scholar
PuReD-MCL: a graph-based PubMed document clustering methodology
T. Theodosiou, N. Darzentas, L. Angelis, C. Ouzounis
2008Bioinform.52 citations Open access
Semantic Scholar
Annotation inconsistencies beyond sequence similarity-based function prediction – phylogeny and genome structure
V. Promponas, I. Iliopoulos, C. Ouzounis
2015Standards in Genomic Sciences41 citations Open access
Semantic Scholar
Taxonomic Identification of Mediterranean Pines and Their Hybrids Based on the High Resolution Melting (HRM) and trnL Approaches: From Cytoplasmic Inheritance to Timber Tracing
Ioannis Ganopoulos, F. Aravanopoulos, P. Madesis, K. Pasentsis +3 more
2013PLoS ONE38 citations Open access
Semantic Scholar
Maps, books and other metaphors for systems biology.
C. Ouzounis, P. Mazière
2006Bio Systems35 citations
Semantic Scholar
Probabilistic annotation of protein sequences based on functional classifications
Emmanuel D. Levy, C. Ouzounis, W. Gilks, B. Audit
2005BMC Bioinformatics33 citations Open access
Semantic Scholar
Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion
R. Neches, N. Kyrpides, C. Ouzounis
2021mBio31 citations Open access
Semantic Scholar
BioTextQuest: a knowledge integration platform for literature mining and concept discovery
Nikolas Papanikolaou, G. Pavlopoulos, E. Pafilis, T. Theodosiou +6 more
201429 citations
Semantic Scholar
A history of the MetaSUB consortium: Tracking urban microbes around the globe
Krista A. Ryon, Braden T. Tierney, A. Frolova, A. Kahles +30 more
2022iScience27 citations Open access
Semantic Scholar
Biological information extraction and co-occurrence analysis.
G. Pavlopoulos, V. Promponas, C. Ouzounis, I. Iliopoulos
2014Methods in molecular biology26 citations
Semantic Scholar
Gene Network and Proteomic Analyses of Cardiac Responses to Pathological and Physiological Stress
I. Drozdov, A. Didangelos, Xiao-Ke Yin, A. Zampetaki +7 more
2013Circulation: Cardiovascular Genetics26 citations
Semantic Scholar
Genome-wide expression patterns in physiological cardiac hypertrophy
I. Drozdov, S. Tsoka, C. Ouzounis, Ajay M. Shah
2010BMC Genomics24 citations Open access
Semantic Scholar
A path towards SARS-CoV-2 attenuation: metabolic pressure on CTP synthesis rules the virus evolution
Zhi-Hua Ou, C. Ouzounis, Da-Xi Wang, Wanying Sun +4 more
2020bioRxiv23 citations Open access
Semantic Scholar
Functional Genomics Evidence Unearths New Moonlighting Roles of Outer Ring Coat Nucleoporins
Katerina R. Katsani, M. Irimia, Christos Karapiperis, Z. Scouras +3 more
2014Scientific Reports22 citations Open access
Semantic Scholar
Denoising inferred functional association networks obtained by gene fusion analysis
A. Kamburov, L. Goldovsky, Shiri Freilich, A. Kapazoglou +4 more
2007BMC Genomics22 citations Open access
Semantic Scholar
A Strong Seasonality Pattern for Covid-19 Incidence Rates Modulated by UV Radiation Levels
Christos Karapiperis, P. Kouklis, S. Papastratos, A. Chasapi +3 more
2021Viruses20 citations Open access
Semantic Scholar
Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks
I. Drozdov, C. Ouzounis, Ajay M. Shah, S. Tsoka
2011BMC Research Notes20 citations Open access
Semantic Scholar
Detection of Genomic Idiosyncrasies Using Fuzzy Phylogenetic Profiles
Fotis Psomopoulos, P. Mitkas, C. Ouzounis
2013PLoS ONE19 citations Open access
Semantic Scholar
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey
V. Promponas, C. Ouzounis, I. Iliopoulos
2012Briefings Bioinform.18 citations Open access
Semantic Scholar
CORRIE: enzyme sequence annotation with confidence estimates
B. Audit, Emmanuel D. Levy, W. Gilks, L. Goldovsky +1 more
2007BMC Bioinformatics18 citations Open access
Semantic Scholar
A recent origin of Orf3a from M protein across the coronavirus lineage arising by sharp divergence
C. Ouzounis
2020Computational and Structural Biotechnology Journal17 citations Open access
Semantic Scholar
An intrinsically disordered proteins community for ELIXIR
Norman E. Davey, M. Babu, M. Blackledge, A. Bridge +40 more
2019F1000Research17 citations Open access
Semantic Scholar
Metabolic innovations towards the human lineage
Shiri Freilich, L. Goldovsky, C. Ouzounis, J. Thornton
2008BMC Evolutionary Biology17 citations Open access
Semantic Scholar
Ancestral state reconstructions for genomes.
C. Ouzounis
2005Current Opinion in Genetics and Development17 citations
Semantic Scholar
Consent insufficient for data release
R. Amann, S. Baichoo, B. Blencowe, P. Bork +46 more
2019Science16 citations Open access
Semantic Scholar
Lineage-specific partitions in archaeal transcription.
Richard M. R. Coulson, Nathalie Touboul, C. Ouzounis
2007Archaea15 citations Open access
Semantic Scholar

Frequent co-authors

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V. Promponas×9
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V. Promponas — researcher profile on SciRah
L. Goldovsky×8
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A. Danchin×7
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S. Tsoka×6
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N. López-Bigas×4

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N. Darzentas×4

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