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B. Walenz · SciRah

Researcher profile · Semantic Scholar

B. Walenz

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B. Walenz — researcher profile on SciRah

h-index: 41
Works: 82
Citations: 40K

Most-cited papers

The Sequence of the Human Genome
J. Venter, M. Adams, E. Myers, Peter W. Li +269 more
2001Science6,769 citations
Semantic Scholar
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
S. Koren, B. Walenz, K. Berlin, J. Miller +2 more
2016bioRxiv6,612 citations Open access
Semantic Scholar
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies
A. Rhie, B. Walenz, S. Koren, A. Phillippy
2020Genome Biology3,483 citations Open access
Semantic Scholar
Towards complete and error-free genome assemblies of all vertebrate species
A. Rhie, Shane A. McCarthy, O. Fedrigo, Joana Damas +123 more
2020Nature2,918 citations Open access
Semantic Scholar
The complete sequence of a human genome
S. Nurk, S. Koren, A. Rhie, Mikko Rautiainen +96 more
2021bioRxiv2,660 citations Open access
Semantic Scholar
The Genome Sequence of the Malaria Mosquito Anopheles gambiae
R. Holt, G. Subramanian, A. Halpern, G. Sutton +119 more
2002Science2,086 citations Open access
Semantic Scholar
The Diploid Genome Sequence of an Individual Human
S. Levy, G. Sutton, P. Ng, L. Feuk +27 more
2007PLoS Biology1,873 citations Open access
Semantic Scholar
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome
Richard A. Gibbs, Jeffrey Rogers, M. Katze, Roger E Bumgarner +172 more
2007Science1,392 citations Open access
Semantic Scholar
Hybrid error correction and de novo assembly of single-molecule sequencing reads
S. Koren, M. Schatz, B. Walenz, Jeffrey A. Martin +7 more
2012Nature Biotechnology1,004 citations Open access
Semantic Scholar
The Atlantic salmon genome provides insights into rediploidization
S. Lien, B. Koop, S. Sandve, J. Miller +41 more
2016Nature996 citations Open access
Semantic Scholar
A draft human pangenome reference
Wen-Wei Liao, Mobin Asri, Jana Ebler, D. Doerr +115 more
2022bioRxiv983 citations Open access
Semantic Scholar
The dynamic genome of Hydra
J. Chapman, E. Kirkness, O. Simakov, S. Hampson +70 more
2010Nature810 citations Open access
Semantic Scholar
HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads
S. Nurk, B. Walenz, A. Rhie, M. Vollger +6 more
2020bioRxiv663 citations Open access
Semantic Scholar
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
Jay Ghurye, A. Rhie, B. Walenz, A. Schmitt +4 more
2018bioRxiv650 citations Open access
Semantic Scholar
Aggressive assembly of pyrosequencing reads with mates
J. Miller, A. Delcher, S. Koren, E. Venter +6 more
2008Bioinform.574 citations Open access
Semantic Scholar
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle
E. Kirkness, B. Haas, Wei-Lin Sun, H. Braig +67 more
2010Proceedings of the National Academy of Sciences of the United States of America548 citations Open access
Semantic Scholar
The bonobo genome compared with the chimpanzee and human genomes
Kay Prüfer, K. Munch, I. Hellmann, K. Akagi +37 more
2012Nature529 citations Open access
Semantic Scholar
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Monika Gulia-Nuss, Andrew B. Nuss, Jason M. Meyer, D. Sonenshine +89 more
2016Nature Communications486 citations Open access
Semantic Scholar
De novo assembly of haplotype-resolved genomes with trio binning
S. Koren, A. Rhie, B. Walenz, A. Dilthey +6 more
2018Nature Biotechnology451 citations Open access
Semantic Scholar
The complete sequence of a human Y chromosome
A. Rhie, S. Nurk, Monika Cechova, S. Hoyt +83 more
2023bioRxiv443 citations Open access
Semantic Scholar
Telomere-to-telomere assembly of diploid chromosomes with Verkko
Mikko Rautiainen, S. Nurk, B. Walenz, G. Logsdon +5 more
2023Nature Biotechnology360 citations Open access
Semantic Scholar
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species
S. Pearce, D. Clarke, P. East, S. Elfekih +58 more
2017BMC Biology313 citations Open access
Semantic Scholar
Genetic Variation in an Individual Human Exome
P. Ng, S. Levy, Jiaqi Huang, T. Stockwell +6 more
2008PLoS Genetics295 citations Open access
Semantic Scholar
Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells
Yann Marcy, Thomas Ishoey, R. Lasken, T. Stockwell +5 more
2007PLoS Genetics287 citations Open access
Semantic Scholar
Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences
M. Lawniczak, S. Emrich, Alisha K Holloway, A. Regier +26 more
2010Science282 citations Open access
Semantic Scholar
Improved reference genome for the domestic horse increases assembly contiguity and composition
T. Kalbfleisch, E. Rice, M. DePriest, B. Walenz +17 more
2018Communications Biology222 citations Open access
Semantic Scholar
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil)
W. Miller, V. Hayes, A. Ratan, D. C. Petersen +26 more
2011Proceedings of the National Academy of Sciences of the United States of America217 citations Open access
Semantic Scholar
Weighted minimizer sampling improves long read mapping
Chirag Jain, A. Rhie, Haowen Zhang, Claudia Chu +3 more
2020bioRxiv198 citations Open access
Semantic Scholar
Whole-genome shotgun assembly and comparison of human genome assemblies
S. Istrail, G. Sutton, Liliana D. Florea, A. Halpern +32 more
2004Proceedings of the National Academy of Sciences of the United States of America198 citations Open access
Semantic Scholar
1001 Optimal PDB Structure Alignments: Integer Programming Methods for Finding the Maximum Contact Map Overlap
A. Caprara, R. Carr, S. Istrail, G. Lancia +1 more
2004J. Comput. Biol.167 citations
Semantic Scholar
A Rickettsia Genome Overrun by Mobile Genetic Elements Provides Insight into the Acquisition of Genes Characteristic of an Obligate Intracellular Lifestyle
Joseph J Gillespie, V. Joardar, K. Williams, T. Driscoll +9 more
2011Journal of Bacteriology166 citations Open access
Semantic Scholar
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
O. K. Tørresen, Bastiaan Star, S. Jentoft, William B. Reinar +12 more
2016BMC Genomics156 citations Open access
Semantic Scholar
101 optimal PDB structure alignments: a branch-and-cut algorithm for the maximum contact map overlap problem
G. Lancia, R. Carr, B. Walenz, S. Istrail
2001Annual International Conference on Research in Computational Molecular Biology140 citations
Semantic Scholar
Consensus generation and variant detection by Celera Assembler
Gennady Denisov, B. Walenz, A. Halpern, J. Miller +3 more
2008Bioinform.121 citations Open access
Semantic Scholar
The Genome of Anopheles darlingi, the main neotropical malaria vector
Osvaldo Marinotti, G. Cerqueira, L. D. de Almeida, M. I. Ferro +65 more
2013Nucleic Acids Research115 citations Open access
Semantic Scholar
Recombination between heterologous human acrocentric chromosomes
A. Guarracino, S. Buonaiuto, L. G. de Lima, Tamara A. Potapova +119 more
2023bioRxiv112 citations Open access
Semantic Scholar
Gene and alternative splicing annotation with AIR.
Liliana D. Florea, V. Di Francesco, Jason R. Miller, R. Turner +11 more
2005Genome Research85 citations Open access
Semantic Scholar
Stalk: an interactive system for virtual molecular docking
D. Levine, M. Facello, P. Hallstrom, G. Reeder +2 more
199779 citations
Semantic Scholar
Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation
G. Formenti, A. Rhie, B. Walenz, F. Thibaud-Nissen +5 more
2022Nature Methods64 citations Open access
Semantic Scholar
Hybrid assembly with long and short reads improves discovery of gene family expansions
J. Miller, Peng Zhou, J. Mudge, James Gurtowski +15 more
2017BMC Genomics60 citations Open access
Semantic Scholar
Effect of sequence depth and length in long-read assembly of the maize inbred NC358
Shujun Ou, Jianing Liu, K. Chougule, A. Fungtammasan +20 more
2020Nature Communications53 citations Open access
Semantic Scholar
Rhesus Macaque Genome Sequencing and Analysis Rhesus Macaque Genome Evolutionary and Biomedical Insights
S. Bell, Kelly E. Bernard, C. Buhay, Mimi N. Chandrabose +50 more
201040 citations
Semantic Scholar
Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding
D. Antipov, Mikko Rautiainen, S. Nurk, B. Walenz +3 more
2025Genome Research38 citations
Semantic Scholar
Verkko: telomere-to-telomere assembly of diploid chromosomes
Mikko Rautiainen, S. Nurk, B. Walenz, G. Logsdon +5 more
2022bioRxiv32 citations Open access
Semantic Scholar
A Space-Efficient Construction of the Burrows–Wheeler Transform for Genomic Data
R. Lippert, C. Mobarry, B. Walenz
2005J. Comput. Biol.31 citations
Semantic Scholar
EquCab3, an Updated Reference Genome for the Domestic Horse
T. Kalbfleisch, E. Rice, M. DePriest, B. Walenz +16 more
201828 citations Open access
Semantic Scholar
Algorithmic strategies in combinatorial chemistry
Deborah Goldman, S. Istrail, G. Lancia, A. Piccolboni +1 more
2000ACM-SIAM Symposium on Discrete Algorithms28 citations
Semantic Scholar
A Tool for Analyzing Mate Pairs in Assemblies (TAMPA)
I. Dew, B. Walenz, G. Sutton
2005J. Comput. Biol.27 citations
Semantic Scholar
The formation and propagation of human Robertsonian chromosomes
L. G. de Lima, A. Guarracino, S. Koren, Tamara A. Potapova +16 more
2024bioRxiv22 citations Open access
Semantic Scholar
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing
B. Walenz, Liliana D. Florea
2011Bioinform.22 citations Open access
Semantic Scholar

Frequent co-authors

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S. Koren×21
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S. Koren — researcher profile on SciRah
A. Phillippy×18
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G. Sutton×15
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A. Rhie×14
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J. Miller — researcher profile on SciRah

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S. Nurk — researcher profile on SciRah

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E. Eichler — researcher profile on SciRah

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A. Halpern — researcher profile on SciRah

K. Remington×7

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Mikko Rautiainen×7

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Mikko Rautiainen — researcher profile on SciRah

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C. Mobarry — researcher profile on SciRah

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S. Istrail — researcher profile on SciRah