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B. Koop · SciRah

Researcher profile · Semantic Scholar

B. Koop

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B. Koop — researcher profile on SciRah

h-index: 58
Works: 207
Citations: 13K

Most-cited papers

The Atlantic salmon genome provides insights into rediploidization
S. Lien, B. Koop, S. Sandve, J. Miller +41 more
2016Nature996 citations Open access
Semantic Scholar
Sex-dependent dominance maintains migration supergene in rainbow trout
Devon E. Pearse, N. Barson, T. Nome, Guangtu Gao +28 more
2018Nature Ecology & Evolution258 citations Open access
Semantic Scholar
Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon
J. Le Luyer, M. Laporte, T. Beacham, K. Kaukinen +5 more
2017Proceedings of the National Academy of Sciences of the United States of America192 citations Open access
Semantic Scholar
Early response of gene expression in the distal intestine of Atlantic salmon (Salmo salar L.) during the development of soybean meal induced enteritis.
C. Sahlmann, Ben J. G. Sutherland, T. Kortner, B. Koop +2 more
2013Fish and Shellfish Immunology189 citations Open access
Semantic Scholar
The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei
E. Rondeau, D. Minkley, Jong S. Leong, A. Messmer +5 more
2014PLoS ONE128 citations Open access
Semantic Scholar
Genomics of sablefish (Anoplopoma fimbria): expressed genes, mitochondrial phylogeny, linkage map and identification of a putative sex gene
E. Rondeau, A. Messmer, D. Sanderson, Stuart G. Jantzen +9 more
2013BMC Genomics111 citations Open access
Semantic Scholar
Chinook salmon (Oncorhynchus tshawytscha) genome and transcriptome
K. Christensen, Jong S. Leong, D. Sakhrani, Carlo A Biagi +5 more
2018PLoS ONE105 citations Open access
Semantic Scholar
Comparative transcriptomics of Atlantic Salmo salar, chum Oncorhynchus keta and pink salmon O. gorbuscha during infections with salmon lice Lepeophtheirus salmonis
Ben J. G. Sutherland, Kim Koczka, Motoshige Yasuike, Stuart G. Jantzen +3 more
2014BMC Genomics104 citations Open access
Semantic Scholar
Parallelism in eco-morphology and gene expression despite variable evolutionary and genomic backgrounds in a Holarctic fish
A. Jacobs, Madeleine Carruthers, A. Yurchenko, N. Gordeeva +8 more
2020PLoS Genetics100 citations Open access
Semantic Scholar
Comprehensive analysis of MHC class II genes in teleost fish genomes reveals dispensability of the peptide-loading DM system in a large part of vertebrates
J. Dijkstra, U. Grimholt, Jong S. Leong, B. Koop +1 more
2013BMC Evolutionary Biology97 citations Open access
Semantic Scholar
Recent advances in conservation and population genomics data analysis
Sarah A. Hendricks, E. Anderson, T. Antao, L. Bernatchez +9 more
2018Evolutionary Applications92 citations Open access
Semantic Scholar
Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture
D. Macqueen, C. Primmer, R. Houston, B. Nowak +31 more
2017BMC Genomics86 citations Open access
Semantic Scholar
A comprehensive analysis of teleost MHC class I sequences
U. Grimholt, Kentaro Tsukamoto, T. Azuma, Jong S. Leong +2 more
2015BMC Evolutionary Biology85 citations Open access
Semantic Scholar
The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly
K. Christensen, E. Rondeau, D. Minkley, Jong S. Leong +9 more
2018PLoS ONE79 citations Open access
Semantic Scholar
Signatures of resistance to Lepeophtheirus salmonis include a TH2-type response at the louse-salmon interface.
L. M. Braden, B. Koop, S. Jones
2015Developmental and Comparative Immunology76 citations
Semantic Scholar
Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication
G. Gillard, L. Grønvold, Line L. Røsæg, M. M. Holen +9 more
2021Genome Biology66 citations Open access
Semantic Scholar
Comparative defense-associated responses in salmon skin elicited by the ectoparasite Lepeophtheirus salmonis.
L. M. Braden, D. Barker, B. Koop, S. Jones
2012Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics66 citations
Semantic Scholar
Transcriptional responses in a Drosophila defensive symbiosis
P. Hamilton, Jong S. Leong, B. Koop, S. Perlman
2014Molecular Ecology49 citations
Semantic Scholar
Genomic Resources for Sea Lice: Analysis of ESTs and Mitochondrial Genomes
Motoshige Yasuike, Jong S. Leong, Stuart G. Jantzen, K. R. von Schalburg +3 more
2011Marine Biotechnology49 citations Open access
Semantic Scholar
Demographic history shaped geographical patterns of deleterious mutation load in a broadly distributed Pacific Salmon
Q. Rougemont, Jean-Sébastien Moore, Thibault Leroy, Éric Normandeau +9 more
2019PLoS Genetics48 citations Open access
Semantic Scholar
Atlantic salmon possesses two clusters of type I interferon receptor genes on different chromosomes, which allows for a larger repertoire of interferon receptors than in zebrafish and mammals.
Bao-Jian Sun, Linn Greiner-Tollersrud, B. Koop, B. Robertsen
2014Developmental and Comparative Immunology47 citations Open access
Semantic Scholar
Whole Genome Linkage Disequilibrium and Effective Population Size in a Coho Salmon (Oncorhynchus kisutch) Breeding Population Using a High-Density SNP Array
A. Barría, K. Christensen, G. Yoshida, A. Jedlicki +6 more
2019Frontiers in Genetics44 citations Open access
Semantic Scholar
Identification of olfactory receptor genes in Atlantic salmon Salmo salar.
K. Johnstone, K. Lubieniecki, B. Koop, W. Davidson
2012Journal of Fish Biology42 citations
Semantic Scholar
Identification of Surrogates of Protection against Yersiniosis in Immersion Vaccinated Atlantic Salmon
Andrew R. Bridle, B. Koop, B. Nowak
2012PLoS ONE42 citations Open access
Semantic Scholar
The rise and fall of the ancient northern pike master sex-determining gene
Qiao-Wei Pan, Romain Feron, E. Jouanno, H. Darras +31 more
2020bioRxiv40 citations Open access
Semantic Scholar
Resolving fine‐scale population structure and fishery exploitation using sequenced microsatellites in a northern fish
K. Layton, B. Dempson, P. Snelgrove, S. Duffy +14 more
2020Evolutionary Applications40 citations Open access
Semantic Scholar
Infectious hematopoietic necrosis virus (IHNV) persistence in Sockeye Salmon: influence on brain transcriptome and subsequent response to the viral mimic poly(I:C)
Anita Müller, Ben J. G. Sutherland, B. Koop, S. C. Johnson +1 more
2015BMC Genomics37 citations Open access
Semantic Scholar
Transcriptomics of coping strategies in free-swimming Lepeophtheirus salmonis (Copepoda) larvae responding to abiotic stress
Ben J. G. Sutherland, Stuart G. Jantzen, Motoshige Yasuike, D. Sanderson +2 more
2012Molecular Ecology37 citations Open access
Semantic Scholar
A PCR assay detects a male-specific duplicated copy of Anti-Müllerian hormone (amh) in the lingcod (Ophiodon elongatus)
E. Rondeau, C. Laurie, S. C. Johnson, B. Koop
2016BMC Research Notes36 citations Open access
Semantic Scholar
Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance
Ben J. G. Sutherland, J. D. Poley, O. Igboeli, Johanna R. Jantzen +3 more
2014Evolutionary Applications35 citations Open access
Semantic Scholar
Chemokine receptors in Atlantic salmon.
U. Grimholt, Helena Hauge, A. G. Hauge, Jong S. Leong +1 more
2015Developmental and Comparative Immunology30 citations
Semantic Scholar
The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome
K. Christensen, E. Rondeau, D. Minkley, D. Sakhrani +10 more
2020PLoS ONE28 citations Open access
Semantic Scholar
The salmon louse genome: copepod features and parasitic adaptations
R. Skern-Mauritzen, K. Malde, C. Eichner, Michael Dondrup +19 more
2021bioRxiv27 citations Open access
Semantic Scholar
Standardized IMGT® Nomenclature of Salmonidae IGH Genes, the Paradigm of Atlantic Salmon and Rainbow Trout: From Genomics to Repertoires
S. Magadán, A. Krasnov, Saida Hadi-Saljoqi, S. Afanasyev +9 more
2019Frontiers in Immunology27 citations Open access
Semantic Scholar
High level efficacy of lufenuron against sea lice (Lepeophtheirus salmonis) linked to rapid impact on moulting processes
J. D. Poley, L. M. Braden, A. Messmer, O. Igboeli +10 more
2018International Journal for Parasitology: Drugs and Drug Resistance27 citations Open access
Semantic Scholar
Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis)
J. D. Poley, Ben J. G. Sutherland, S. Jones, B. Koop +1 more
2016BMC Genomics27 citations Open access
Semantic Scholar
Long distance migration is a major factor driving local adaptation at continental scale in Coho Salmon
Q. Rougemont, Amanda Xuereb, Xavier Dallaire, Jean-Sébastien Moore +12 more
2021bioRxiv26 citations Open access
Semantic Scholar
Design and characterization of an 87k SNP genotyping array for Arctic charr (Salvelinus alpinus)
C. Nugent, Jong S. Leong, K. Christensen, E. Rondeau +8 more
2019PLoS ONE26 citations Open access
Semantic Scholar
Cypermethrin exposure induces metabolic and stress-related gene expression in copepodid salmon lice (Lepeophtheirus salmonis).
J. D. Poley, L. M. Braden, A. Messmer, S. Whyte +2 more
2016Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics24 citations
Semantic Scholar
Retraction: The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly
K. Christensen, E. Rondeau, D. Minkley, Jong S. Leong +9 more
2021PLoS ONE23 citations Open access
Semantic Scholar
Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon.
K. Christensen, J. Le Luyer, Michelle T. T. Chan, E. Rondeau +3 more
2021G323 citations Open access
Semantic Scholar
Sex-specific expression, synthesis and localization of aromatase regulators in one-year-old Atlantic salmon ovaries and testes.
K. R. von Schalburg, B. Gowen, E. Rondeau, Norman W Johnson +4 more
2013Comparative Biochemistry and Physiology Part B Comparative Biochemistry23 citations
Semantic Scholar
Limited genetic parallelism underlies recent, repeated incipient speciation in geographically proximate populations of an Arctic fish (Salvelinus alpinus)
S. J. Salisbury, G. R. McCracken, R. Perry, Donald G. Keefe +8 more
2020Molecular Ecology22 citations
Semantic Scholar
Re‐evaluating Coho salmon (Oncorhynchus kisutch) conservation units in Canada using genomic data
Amanda Xuereb, Q. Rougemont, Xavier Dallaire, Jean-Sébastien Moore +7 more
2022Evolutionary Applications21 citations Open access
Semantic Scholar
A 200K SNP chip reveals a novel Pacific salmon louse genotype linked to differential efficacy of emamectin benzoate.
A. Messmer, Jong S. Leong, E. Rondeau, A. Mueller +10 more
2018Marine Genomics21 citations Open access
Semantic Scholar
Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar suggests increased parasite fitness
L. M. Braden, Ben J. G. Sutherland, B. Koop, S. Jones
2017BMC Genomics21 citations Open access
Semantic Scholar
Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)
S. Pavey, Ben J. G. Sutherland, Jong S. Leong, A. Robb +4 more
2011BMC Ecology20 citations Open access
Semantic Scholar
Convergent geographic patterns between grizzly bear population genetic structure and Indigenous language groups in coastal British Columbia, Canada
Lauren H. Henson, N. Balkenhol, R. Gustas, M. Adams +10 more
202119 citations Open access
Semantic Scholar
Multi-tissue transcriptome profiles for coho salmon (Oncorhynchus kisutch), a species undergoing rediploidization following whole-genome duplication.
Jin-Hyoung Kim, Jong S. Leong, B. Koop, R. Devlin
2016Marine Genomics19 citations
Semantic Scholar
The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle
K. Christensen, E. Rondeau, D. Sakhrani, Carlo A Biagi +15 more
2021PLoS ONE18 citations Open access
Semantic Scholar

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