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M. List · SciRah

Researcher profile · Semantic Scholar

M. List

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M. List — researcher profile on SciRah

h-index: 32
Works: 144
Citations: 6,069

Most-cited papers

Network pharmacology: curing causal mechanisms instead of treating symptoms.
Cristian Nogales, Zeinab M. Mamdouh, M. List, C. Kiel +2 more
2021TIPS - Trends in Pharmacological Sciences1,082 citations Open access
Semantic Scholar
Mass-spectrometry-based draft of the Arabidopsis proteome
J. Mergner, Martin Frejno, M. List, Michael Papacek +28 more
2020Nature415 citations Open access
Semantic Scholar
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
Isabel Abellan-Schneyder, M. Matchado, Sandra Reitmeier, Alina Sommer +4 more
2021Msphere400 citations Open access
Semantic Scholar
Network analysis methods for studying microbial communities: A mini review
M. Matchado, Michael Lauber, Sandra Reitmeier, T. Kacprowski +3 more
2021Computational and Structural Biotechnology Journal328 citations Open access
Semantic Scholar
Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data.
G. Sturm, F. Finotello, M. List
2020Methods in molecular biology250 citations
Semantic Scholar
Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes.
Sandra Reitmeier, Silke Kiessling, T. Clavel, M. List +21 more
2020Cell Host and Microbe247 citations Open access
Semantic Scholar
On the limits of 16S rRNA gene-based metagenome prediction and functional profiling
M. Matchado, M. Rühlemann, Sandra Reitmeier, Tim Kacprowski +4 more
2023bioRxiv237 citations Open access
Semantic Scholar
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
Franziska Hufsky, Kevin Lamkiewicz, A. Almeida, A. Aouacheria +51 more
2020Briefings Bioinform.130 citations Open access
Semantic Scholar
Cracking the black box of deep sequence-based protein–protein interaction prediction
J. Bernett, David B. Blumenthal, M. List
2023bioRxiv118 citations Open access
Semantic Scholar
Privacy-Preserving Artificial Intelligence Techniques in Biomedicine
Reihaneh Torkzadehmahani, Reza Nasirigerdeh, David B. Blumenthal, T. Kacprowski +21 more
2020Methods of Information in Medicine109 citations Open access
Semantic Scholar
SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype
D. Bongiovanni, M. Klug, O. Lazareva, S. Weidlich +12 more
2021Cell Death and Disease92 citations Open access
Semantic Scholar
Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside
Federica Sarno, G. Benincasa, M. List, A. Barabasi +15 more
2021Clinical Epigenetics64 citations Open access
Semantic Scholar
Quantitative comparison of within-sample heterogeneity scores for DNA methylation data
M. Scherer, A. Nebel, A. Franke, J. Walter +4 more
2020Nucleic Acids Research64 citations Open access
Semantic Scholar
Network-based approaches for modeling disease regulation and progression
Gihanna Galindez, Sepideh Sadegh, J. Baumbach, T. Kacprowski +1 more
2022Computational and Structural Biotechnology Journal58 citations Open access
Semantic Scholar
PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells
Markus Flosbach, Susanne G. Oberle, S. Scherer, Jana Zecha +10 more
2020Cell Reports53 citations Open access
Semantic Scholar
DIGGER: exploring the functional role of alternative splicing in protein interactions
Z. Louadi, K. Yuan, A. Gress, O. Tsoy +4 more
2020Nucleic Acids Res.50 citations Open access
Semantic Scholar
The AIMe registry for artificial intelligence in biomedical research
J. Matschinske, N. Alcaraz, Arriel Benis, Martin Golebiewski +21 more
2021Nature Methods48 citations Open access
Semantic Scholar
On the limits of active module identification
O. Lazareva, J. Baumbach, M. List, David B. Blumenthal
2021Briefings Bioinform.46 citations
Semantic Scholar
The FeatureCloud Platform for Federated Learning in Biomedicine: Unified Approach
J. Matschinske, Julian Späth, Mohammad Bakhtiari, Niklas Probul +35 more
2023Journal of Medical Internet Research39 citations Open access
Semantic Scholar
Hepatocellular Carcinoma and Nuclear Paraspeckles: Induction in Chemoresistance and Prediction for Poor Survival.
S. Kessler, Kevan Hosseini, U. K. Hussein, Kyoung Min Kim +6 more
2019Cellular Physiology and Biochemistry37 citations Open access
Semantic Scholar
CFP suppresses breast cancer cell growth by TES-mediated upregulation of the transcription factor DDIT3
Ines Block, C. Müller, Daniel Sdogati, Henriette Pedersen +15 more
2019Oncogene35 citations
Semantic Scholar
Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases
Z. Louadi, M. Elkjaer, M. Klug, Chit Tong Lio +7 more
2021Genome Biology34 citations Open access
Semantic Scholar
Mechanistic Modeling and Multiscale Applications for Precision Medicine: Theory and Practice
E. Stalidzans, M. Zanin, P. Tieri, F. Castiglione +9 more
2020Network and Systems Medicine33 citations Open access
Semantic Scholar
Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing
Andreas Maier, Michael Hartung, M. Abovsky, Klaudia Adamowicz +36 more
2024Nucleic Acids Research32 citations Open access
Semantic Scholar
sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies
Reza Nasirigerdeh, Reihaneh Torkzadehmahani, J. Matschinske, Tobias Frisch +11 more
2022Genome Biology29 citations Open access
Semantic Scholar
Flimma: a federated and privacy-aware tool for differential gene expression analysis
O. Zolotareva, Reza Nasirigerdeh, J. Matschinske, Reihaneh Torkzadehmahani +11 more
2021Genome Biology28 citations Open access
Semantic Scholar
AI in microbiome‐related healthcare
Niklas Probul, Zihua Huang, C. Saak, Jan Baumbach +1 more
2024Microbial Biotechnology27 citations Open access
Semantic Scholar
Computational tools for inferring transcription factor activity
Dennis Hecker, Michael Lauber, Fatemeh Behjati Ardakani, Shamim Ashrafiyan +5 more
2023Proteomics27 citations Open access
Semantic Scholar
SimBu: Bias-aware simulation of bulk RNA-seq data with variable cell type composition
Alexander Dietrich, G. Sturm, L. Merotto, F. Marini +2 more
2022bioRxiv25 citations Open access
Semantic Scholar
On the limits of graph neural networks for the early diagnosis of Alzheimer’s disease
Laura Hernández-Lorenzo, Markus Hoffmann, Evelyn Scheibling, M. List +2 more
2022Scientific Reports25 citations Open access
Semantic Scholar
EpiRegio: analysis and retrieval of regulatory elements linked to genes
N. Baumgarten, Dennis Hecker, Sivarajan Karunanithi, Florian Schmidt +2 more
2020Nucleic Acids Res.25 citations Open access
Semantic Scholar
Namco: a microbiome explorer
Alexander Dietrich, M. Matchado, Maximilian Zwiebel, Benjamin Ölke +9 more
2021bioRxiv23 citations Open access
Semantic Scholar
BiCoN: Network-constrained biclustering of patients and omics data
O. Lazareva, Hoan Van Do, S. Canzar, K. Yuan +5 more
2020bioRxiv23 citations Open access
Semantic Scholar
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging
Markus Hoffmann, Leon Schwartz, Octavia-Andreea Ciora, Nico Trummer +7 more
2023Bioinformatics Advances22 citations Open access
Semantic Scholar
Machine learning for deciphering cell heterogeneity and gene regulation
M. Scherer, Florian Schmidt, O. Lazareva, J. Walter +3 more
2021Nature Computational Science22 citations
Semantic Scholar
sPLINK: A Federated, Privacy-Preserving Tool as a Robust Alternative to Meta-Analysis in Genome-Wide Association Studies
Reza Nasirigerdeh, Reihaneh Torkzadehmahani, J. Matschinske, Tobias Frisch +8 more
2020bioRxiv21 citations Open access
Semantic Scholar
Alternative splicing analysis benchmark with DICAST
Amit M. Fenn, O. Tsoy, T. Faro, Fanny L. M. Rößler +8 more
2022bioRxiv19 citations Open access
Semantic Scholar
ASimulatoR: splice-aware RNA-Seq data simulation
Quirin Manz, O. Tsoy, Amit M. Fenn, J. Baumbach +3 more
2021Bioinform.15 citations
Semantic Scholar
Platelet Surface Protein Expression and Reactivity upon TRAP Stimulation after BNT162b2 Vaccination
M. Klug, O. Lazareva, K. Kirmes, M. Rosenbaum +12 more
2021Thrombosis and Haemostasis15 citations Open access
Semantic Scholar
Multi-omics regulatory network inference in the presence of missing data
J. D. Henao, Michael Lauber, Manuel Azevedo, Anastasiia Grekova +4 more
2023bioRxiv14 citations Open access
Semantic Scholar
SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions
M. Hoffmann, Elisabeth Pachl, Michael Hartung, Veronika Stiegler +3 more
2021NAR Cancer14 citations Open access
Semantic Scholar
The FeatureCloud AI Store for Federated Learning in Biomedicine and Beyond
J. Matschinske, Julian Späth, Reza Nasirigerdeh, Reihaneh Torkzadehmahani +28 more
2021arXiv.org14 citations
Semantic Scholar
Emergence of power law distributions in protein-protein interaction networks through study bias
David B. Blumenthal, Marta Lucchetta, Linda Kleist, S. Fekete +2 more
2024bioRxiv13 citations Open access
Semantic Scholar
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2
Markus Hoffmann, Lina-Liv Willruth, Alexander Dietrich, H. Lee +6 more
2023bioRxiv13 citations Open access
Semantic Scholar
EpiGEN: an epistasis simulation pipeline
David B. Blumenthal, Lorenzo Viola, M. List, J. Baumbach +2 more
2020Bioinform.13 citations Open access
Semantic Scholar
spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape
Fabio Boniolo, Markus Hoffmann, Norman Roggendorf, Bahar Tercan +5 more
2023bioRxiv12 citations Open access
Semantic Scholar
MiRNA-181d Expression Significantly Affects Treatment Responses to Carmustine Wafer Implantation.
Christoph Sippl, R. Ketter, L. Bohr, Yoo-Jin Kim +3 more
2019Neurosurgery12 citations
Semantic Scholar
Robust disease module mining via enumeration of diverse prize-collecting Steiner trees
J. Bernett, Dominik Krupke, Sepideh Sadegh, J. Baumbach +4 more
2022Bioinform.11 citations Open access
Semantic Scholar
A systematic comparison of novel and existing differential analysis methods for CyTOF data
Lis Arend, J. Bernett, Quirin Manz, M. Klug +4 more
2021Briefings Bioinform.11 citations Open access
Semantic Scholar
Federated Multi-Mini-Batch: An Efficient Training Approach to Federated Learning in Non-IID Environments
Mohammad Bakhtiari, Reza Nasirigerdeh, Reihaneh Torkzadehmahani, Amirhossein Bayat +3 more
2020arXiv.org11 citations
Semantic Scholar

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