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F. Castiglione · SciRah

Researcher profile · Semantic Scholar

F. Castiglione

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F. Castiglione — researcher profile on SciRah

h-index: 36
Works: 158
Citations: 5,329

Most-cited papers

Computational Immunology Meets Bioinformatics: The Use of Prediction Tools for Molecular Binding in the Simulation of the Immune System
N. Rapin, O. Lund, M. Bernaschi, F. Castiglione
2010PLoS ONE1,069 citations Open access
Semantic Scholar
A candidate multi-epitope vaccine against SARS-CoV-2
Tamalika Kar, Utkarsh Narsaria, Srijita Basak, Debashrito Deb +3 more
2020Scientific Reports319 citations Open access
Semantic Scholar
Immune system simulation online
N. Rapin, O. Lund, F. Castiglione
2011Bioinform.218 citations Open access
Semantic Scholar
How the Interval between Prime and Boost Injection Affects the Immune Response in a Computational Model of the Immune System
F. Castiglione, Francesca Mantile, P. De Berardinis, A. Prisco
2012Comput. Math. Methods Medicine202 citations Open access
Semantic Scholar
Integrated Network Analysis Identifies Fight-Club Nodes as a Class of Hubs Encompassing Key Putative Switch Genes That Induce Major Transcriptome Reprogramming during Grapevine Development[W][OPEN]
M. C. Palumbo, S. Zenoni, M. Fasoli, Mélanie Massonnet +4 more
2014The Plant Cell123 citations Open access
Semantic Scholar
Gene Regulatory Network Modeling of Macrophage Differentiation Corroborates the Continuum Hypothesis of Polarization States
Alessandro Palma, A. Jarrah, P. Tieri, G. Cesareni +1 more
2018Frontiers in Physiology110 citations Open access
Semantic Scholar
Characterisation of the Idiotypic Immune Network Through Persistent Entropy
M. Rucco, F. Castiglione, E. Merelli, M. Pettini
2014European Conference on Complex Systems99 citations
Semantic Scholar
Identification and validation of viral antigens sharing sequence and structural homology with tumor-associated antigens (TAAs).
Concetta Ragone, Carmen Manolio, Beatrice Cavalluzzo, Angela Mauriello +8 more
2021Journal for ImmunoTherapy of Cancer72 citations Open access
Semantic Scholar
Multiscale modelling in immunology: a review
A. Cappuccio, P. Tieri, F. Castiglione
2016Briefings Bioinform.69 citations Open access
Semantic Scholar
The emerging role of ECM crosslinking in T cell mobility as a hallmark of immunosenescence in humans.
J. Moreau, T. Pradeu, A. Grignolio, C. Nardini +7 more
2017Ageing Research Reviews67 citations Open access
Semantic Scholar
In-silico evaluation of adenoviral COVID-19 vaccination protocols: Assessment of immunological memory up to 6 months after the third dose
P. Stolfi, F. Castiglione, Enrico Mastrostefano, Immacolata Di Biase +3 more
2022Frontiers in Immunology64 citations Open access
Semantic Scholar
From Infection to Immunity: Understanding the Response to SARS-CoV2 Through In-Silico Modeling
F. Castiglione, Debashrito Deb, A. Srivastava, Pietro Lio' +1 more
2020bioRxiv64 citations Open access
Semantic Scholar
Modeling Biology Spanning Different Scales: An Open Challenge
F. Castiglione, F. Pappalardo, C. Bianca, Giulia Russo +1 more
2014BioMed Research International64 citations Open access
Semantic Scholar
Network Inference and Reconstruction in Bioinformatics
P. Tieri, L. Farina, M. Petti, L. Astolfi +2 more
2019Encyclopedia of Bioinformatics and Computational Biology58 citations
Semantic Scholar
Vaccine protocols optimization: in silico experiences.
F. Pappalardo, M. Pennisi, F. Castiglione, S. Motta
2010Biotechnology Advances52 citations
Semantic Scholar
ImmunoGrid: towards agent-based simulations of the human immune system at a natural scale†
M. Halling-Brown, F. Pappalardo, N. Rapin, Ping Zhang +21 more
2010Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences51 citations
Semantic Scholar
Agent Based Modeling and Simulation, Introduction to
F. Castiglione
2009Encyclopedia of Complexity and Systems Science49 citations
Semantic Scholar
Mathematical and Computational Models in Tumor Immunology
F. Pappalardo, A. Palladini, M. Pennisi, F. Castiglione +1 more
201244 citations Open access
Semantic Scholar
Deep learning in systems medicine
Hai-Ying Wang, E. Pujos-Guillot, B. Comte, J. L. de Miranda +10 more
2020Briefings Bioinform.42 citations Open access
Semantic Scholar
Mechanistic Modeling and Multiscale Applications for Precision Medicine: Theory and Practice
E. Stalidzans, M. Zanin, P. Tieri, F. Castiglione +9 more
2020Network and Systems Medicine33 citations Open access
Semantic Scholar
A system model of the effects of exercise on plasma Interleukin-6 dynamics in healthy individuals: Role of skeletal muscle and adipose tissue
M. Morettini, M. C. Palumbo, M. Sacchetti, F. Castiglione +1 more
2017PLoS ONE32 citations Open access
Semantic Scholar
Timely HAART initiation may pave the way for a better viral control
P. Paci, F. Martini, M. Bernaschi, G. D'Offizi +1 more
2011BMC Infectious Diseases32 citations Open access
Semantic Scholar
Human monocyte-derived dendritic cells exposed to hyperthermia show a distinct gene expression profile and selective upregulation of IGFBP6
A. Liso, S. Castellani, F. Massenzio, R. Trotta +12 more
2017OncoTarget30 citations Open access
Semantic Scholar
In silico designing of vaccine candidate against Clostridium difficile
Srijita Basak, Debashrito Deb, Utkarsh Narsaria, Tamalika Kar +4 more
2021Scientific Reports29 citations Open access
Semantic Scholar
Personalizing physical exercise in a computational model of fuel homeostasis
M. C. Palumbo, M. Morettini, P. Tieri, F. Diele +2 more
2018PLoS Comput. Biol.29 citations Open access
Semantic Scholar
Immune System Modelling and Simulation
F. Castiglione, F. Celada
201527 citations
Semantic Scholar
Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation
M. Pedicini, F. Barrenäs, T. Clancy, F. Castiglione +4 more
2010PLoS Comput. Biol.27 citations Open access
Semantic Scholar
Development of Immune-Specific Interaction Potentials and Their Application in the Multi-Agent-System VaccImm
A. Woelke, Joachim von Eichborn, M. S. Murgueitio, C. Worth +2 more
2011PLoS ONE24 citations Open access
Semantic Scholar
Computational modeling of immune system of the fish for a more effective vaccination in aquaculture
Alice Madonia, C. Melchiorri, S. Bonamano, M. Marcelli +7 more
2017Bioinform.22 citations Open access
Semantic Scholar
Modeling the Effect of High Calorie Diet on the Interplay between Adipose Tissue, Inflammation, and Diabetes
Vinca Prana, P. Tieri, M. C. Palumbo, E. Mancini +1 more
2019Comput. Math. Methods Medicine20 citations Open access
Semantic Scholar
Identifying Correlations between Chromosomal Proximity of Genes and Distance of Their Products in Protein-Protein Interaction Networks of Yeast
D. Santoni, F. Castiglione, P. Paci
2013PLoS ONE20 citations Open access
Semantic Scholar
Emulating complex simulations by machine learning methods
P. Stolfi, F. Castiglione
2021BMC Bioinformatics19 citations Open access
Semantic Scholar
Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine
M. Zanin, Ivan Chorbev, B. Stres, E. Stalidzans +12 more
2017Briefings Bioinform.19 citations Open access
Semantic Scholar
Statistical ensemble of gene regulatory networks of macrophage differentiation
F. Castiglione, P. Tieri, Alessandro Palma, A. Jarrah
2016BMC Bioinformatics19 citations Open access
Semantic Scholar
Immunological network signatures of cancer progression and survival
T. Clancy, M. Pedicini, F. Castiglione, D. Santoni +4 more
2011BMC Medical Genomics19 citations Open access
Semantic Scholar
Potential predictors of type-2 diabetes risk: machine learning, synthetic data and wearable health devices
P. Stolfi, I. Valentini, M. C. Palumbo, P. Tieri +2 more
2019BMC Bioinformatics18 citations Open access
Semantic Scholar
Game of neutrophils: modeling the balance between apoptosis and necrosis
Alva Presbitero, E. Mancini, F. Castiglione, V. Krzhizhanovskaya +1 more
2019BMC Bioinformatics18 citations Open access
Semantic Scholar
A Mathematical Model of Skeletal Muscle Disease and Immune Response in the mdx Mouse
A. Jarrah, F. Castiglione, N. P. Evans, R. Grange +1 more
2014BioMed Research International18 citations Open access
Semantic Scholar
VaccImm: simulating peptide vaccination in cancer therapy
Joachim von Eichborn, A. Woelke, F. Castiglione, R. Preissner
2013BMC Bioinformatics17 citations Open access
Semantic Scholar
UvA-DARE ( Digital Academic Repository ) HIV reservoirs and immune surveillance evasion cause the failure of structured treatment interruptions : a computational study
E. Mancini, F. Castiglione, M. Bernaschi, A. De Luca +1 more
201217 citations
Semantic Scholar
The Onset of Type 2 Diabetes: Proposal for a Multi-Scale Model
F. Castiglione, P. Tieri, A. D. de Graaf, C. Franceschi +18 more
2013JMIR Research Protocols15 citations Open access
Semantic Scholar
An Early Stage Researcher's Primer on Systems Medicine Terminology
M. Zanin, Nadim A. A. Aitya, J. Basílio, J. Baumbach +51 more
2020Network and Systems Medicine12 citations Open access
Semantic Scholar
The clinical significance of HCV core antigen detection during Telaprevir/Peg-Interferon/Ribavirin therapy in patients with HCV 1 genotype infection.
A. Garbuglia, R. Lionetti, D. Lapa, C. Taibi +6 more
2015Journal of Clinical Virology12 citations
Semantic Scholar
A resting state EEG study on depressed persons with suicidal ideation.
F. Amico, D. De Canditiis, F. Castiglione, A. Pascarella +4 more
2023IBRO Neuroscience Reports11 citations Open access
Semantic Scholar
Immunoinformatics based designing a multi‐epitope vaccine against pathogenic Chandipura vesiculovirus
Debashrito Deb, Srijita Basak, Tamalika Kar, Utkarsh Narsaria +4 more
2021Journal of Cellular Biochemistry10 citations
Semantic Scholar
Physio-Environmental Sensing and Live Modeling
F. Castiglione, Vanessa Diaz, A. Gaggioli, Pietro Liò +5 more
2013Interactive Journal of Medical Research10 citations Open access
Semantic Scholar
A computational model of the effects of macronutrients absorption and physical exercise on hormonal regulation and metabolic homeostasis
M. C. Palumbo, A. D. de Graaf, M. Morettini, P. Tieri +2 more
2023Comput. Biol. Medicine9 citations Open access
Semantic Scholar
Modeling Immune Response to Leishmania Species Indicates Adenosine As an Important Inhibitor of Th-Cell Activation
H. A. Ribeiro, T. Maioli, L. D. de Freitas, P. Tieri +1 more
2017Frontiers in Cellular and Infection Microbiology9 citations Open access
Semantic Scholar
The hierarchical organization of natural protein interaction networks confers self-organization properties on pseudocells
Eugenia Galeota, Caius Gravila, F. Castiglione, M. Bernaschi +1 more
2015BMC Systems Biology9 citations Open access
Semantic Scholar
Multi-scale Simulation of T Helper Lymphocyte Differentiation
P. Tieri, Vinca Prana, T. Colombo, D. Santoni +1 more
2014Brazilian Symposium on Bioinformatics9 citations
Semantic Scholar

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