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N. Baumgarten · SciRah

Researcher profile · Semantic Scholar

N. Baumgarten

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N. Baumgarten — researcher profile on SciRah

h-index: 7
Works: 26
Citations: 436

Most-cited papers

Single cell sequencing reveals endothelial plasticity with transient mesenchymal activation after myocardial infarction
L. Tombor, D. John, S. Glaser, G. Luxán +20 more
2020Nature Communications270 citations Open access
Semantic Scholar
TEPIC 2—an extended framework for transcription factor binding prediction and integrative epigenomic analysis
Florian Schmidt, Fabian Kern, Peter Ebert, N. Baumgarten +1 more
2018Bioinform.34 citations Open access
Semantic Scholar
EpiRegio: analysis and retrieval of regulatory elements linked to genes
N. Baumgarten, Dennis Hecker, Sivarajan Karunanithi, Florian Schmidt +2 more
2020Nucleic Acids Res.25 citations Open access
Semantic Scholar
Integrative analysis of epigenetics data identifies gene-specific regulatory elements
Florian Schmidt, Alexander Marx, N. Baumgarten, Marie Hebel +7 more
2019bioRxiv23 citations Open access
Semantic Scholar
DOT1L regulates chamber-specific transcriptional networks during cardiogenesis and mediates postnatal cell cycle withdrawal
P. Cattaneo, Michael G. B. Hayes, N. Baumgarten, Dennis Hecker +15 more
2022Nature Communications21 citations Open access
Semantic Scholar
CVD-associated SNPs with regulatory potential reveal novel non-coding disease genes
Chao-Nan Zhu, N. Baumgarten, Mei-Qian Wu, Yue Wang +10 more
2023Human Genomics14 citations Open access
Semantic Scholar
Circular RNA circPLOD2 regulates pericyte function by targeting the transcription factor KLF4
S. Glaser, Andre Brezski, N. Baumgarten, M. Klangwart +9 more
2022bioRxiv13 citations Open access
Semantic Scholar
The transaminase-ω-amidase pathway senses oxidative stress to control glutamine metabolism and α-ketoglutarate levels in endothelial cells
Niklas Herrle, P. Malacarne, T. Warwick, Alfredo Cabrera-Orefice +36 more
2025EMBO Journal7 citations Open access
Semantic Scholar
A statistical approach for identifying single nucleotide variants that affect transcription factor binding
N. Baumgarten, Laura Rumpf, Thorsten Kessler, Marcel H. Schulz
2024iScience6 citations Open access
Semantic Scholar
TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors
Markus Hoffmann, Nico Trummer, Leon Schwartz, Jakub Jankowski +11 more
2022bioRxiv6 citations Open access
Semantic Scholar
EpiATLAS – a reference for human epigenomic research
Quirin Manz, M. Bilenky, Dennis Hecker, Nihit Aggarwal +144 more
2026bioRxiv4 citations Open access
Semantic Scholar
A statistical approach to identify regulatory DNA variations
N. Baumgarten, Laura Rumpf, T. Kessler, Marcel H. Schulz
2023bioRxiv4 citations Open access
Semantic Scholar
The transaminase-ω-amidase pathway is a redox switch in glutamine metabolism that generates α-ketoglutarate
Niklas Herrle, P. Malacarne, T. Warwick, Alfredo Cabrera-Orefice +28 more
2024bioRxiv3 citations Open access
Semantic Scholar
A categorization of spatial transcriptomics methods for cell-cell communication analysis.
Zlatka Fischer, Katharina Imkeller, Marcel H. Schulz, N. Baumgarten
2026Trends in Genetics2 citations Open access
Semantic Scholar
Improved linking of motifs to their TFs using domain information
N. Baumgarten, Florian Schmidt, Marcel H. Schulz
2019Bioinform.2 citations Open access
Semantic Scholar
Cell type-specific epigenetic regulatory circuitry of coronary artery disease loci
Dennis Hecker, Xiao-Ning Song, N. Baumgarten, A. Diagel +16 more
2026Nature Communications1 citations Open access
Semantic Scholar
Enhancing KLF15 activity in cardiomyocytes: a novel approach to prevent pathological reprogramming and fibrosis via nuclease-deficient dCas9VPR
E. Schoger, Rosa Kim, F. Bleckwedel, Tomas Peralta +20 more
2026Signal Transduction and Targeted Therapy1 citations Open access
Semantic Scholar
Identification of Parkinson’s disease-associated regulatory variants in human dopaminergic neurons reveals modulators of SCARB2 and BAG3 expression
Déborah Gerard, Jochen Ohnmacht, Borja Gomez-Ramos, Marie Catillon +14 more
2026bioRxiv1 citations Open access
Semantic Scholar
Cell type-specific epigenetic regulatory circuitry of coronary artery disease loci
Dennis Hecker, Xiao-Ning Song, N. Baumgarten, A. Diagel +12 more
2025bioRxiv1 citations Open access
Semantic Scholar
Prediction of transcription factor binding using epigenomics and genome variation data
N. Baumgarten
20240 citations Open access
Semantic Scholar
CVD-associated SNPs with regulatory potential drive pathologic non-coding RNA expression
Chao-Nan Zhu, N. Baumgarten, Mei-Qian Wu, Yue Wang +10 more
2023bioRxiv0 citations Open access
Semantic Scholar
Prevalently carried HLA allele associates with inflammation and poor prognosis in HF patients via co-stimulatory, adhesion and MHC-II enhanceosome regulation
W. Abplanalp, M. Merten, S. Cremer, T. Rasper +10 more
2023European Heart Journal0 citations Open access
Semantic Scholar
The epigenetic modifier DOT1L regulates gene regulatory networks necessary for cardiac patterning and cardiomyocyte cell cycle withdrawal
P. Cattaneo, Michael G. B. Hayes, N. Baumgarten, Dennis Hecker +13 more
2022bioRxiv0 citations Open access
Semantic Scholar
Exploration of enhancer-promoter interactions and their transcription factor networks using topic modelling
Dennis Hecker, N. Baumgarten, Marcel H. Schulz
20210 citations Open access
Semantic Scholar
Computational prediction of CRISPR-impaired non-coding regulatory regions
N. Baumgarten, Florian Schmidt, Martin Wegner, Marie Hebel +2 more
2020bioRxiv0 citations Open access
Semantic Scholar
BALL-SNPgp - from genetic variants toward computational diagnostics
Sabine C. Mueller, C. Backes, A. Gress, N. Baumgarten +5 more
2016Bioinform.0 citations
Semantic Scholar

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