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C. Trefois · SciRah

Researcher profile · Semantic Scholar

C. Trefois

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C. Trefois — researcher profile on SciRah

h-index: 12
Works: 52
Citations: 1,460

Most-cited papers

Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map
Kazuhiro A. Fujita, M. Ostaszewski, Yukiko Matsuoka, Samik Ghosh +15 more
2013Molecular Neurobiology267 citations Open access
Semantic Scholar
PredictProtein - Predicting Protein Structure and Function for 29 Years
Michael Bernhofer, Christian Dallago, Tim Karl, Venkata P. Satagopam +24 more
2021bioRxiv213 citations Open access
Semantic Scholar
Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions
Federico Baldini, Johannes Hertel, E. Sandt, C. Thinnes +110 more
2020BMC Biology207 citations Open access
Semantic Scholar
Characterization of Differentiated SH-SY5Y as Neuronal Screening Model Reveals Increased Oxidative Vulnerability
J. I. Forster, Sandra Köglsberger, C. Trefois, Olga Boyd +4 more
2016Journal of biomolecular screening199 citations Open access
Semantic Scholar
Systems genomics evaluation of the SH-SY5Y neuroblastoma cell line as a model for Parkinson’s disease
Abhimanyu Krishna, Maria Biryukov, C. Trefois, Paul M. A. Antony +16 more
2014BMC Genomics160 citations Open access
Semantic Scholar
Critical transitions in chronic disease: transferring concepts from ecology to systems medicine.
C. Trefois, P. Antony, Jorge M. Gonçalves, A. Skupin +1 more
2015Current Opinion in Biotechnology113 citations Open access
Semantic Scholar
Amplitude and horizontal structure of a large diurnal sea surface warming event during the Coastal Ocean Dynamics Experiment
P. Flament, J. Firing, M. Sawyer, C. Trefois
1994Oceanographic Literature Review73 citations
Semantic Scholar
Light microscopy applications in systems biology: opportunities and challenges
P. Antony, C. Trefois, Aleksandar Stojanovic, A. Baumuratov +1 more
2013Cell Communication and Signaling44 citations Open access
Semantic Scholar
Model-based assessment of mammalian cell metabolic functionalities using omics data
A. Richelle, Benjamin P. Kellman, Alexander T. Wenzel, Austin W.T. Chiang +16 more
2021Cell Reports Methods43 citations Open access
Semantic Scholar
Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes
L. Pavelka, A. Rauschenberger, Z. Landoulsi, S. Pachchek +123 more
2022npj Parkinson's Disease32 citations Open access
Semantic Scholar
Platelet mitochondrial membrane potential in Parkinson's disease
P. Antony, Olga Boyd, C. Trefois, W. Ammerlaan +7 more
2014Annals of Clinical and Translational Neurology18 citations Open access
Semantic Scholar
GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets
Miroslav Kratochvíl, O. Hunewald, Laurent Heirendt, Vasco Verissimo +5 more
2020bioRxiv14 citations Open access
Semantic Scholar
Interrogating the effect of enzyme kinetics on metabolism using differentiable constraint-based models
S. Wilken, Mathieu Besançon, Miroslav Kratochvíl, Chilperic Armel Foko Kuate +3 more
2022bioRxiv12 citations Open access
Semantic Scholar
The need for standardisation in life science research - an approach to excellence and trust.
Susanne Hollmann, Andreas Kremer, Š. Baebler, C. Trefois +11 more
2020F1000Research12 citations Open access
Semantic Scholar
Creation of a pandemic memory by tracing COVID-19 infections and immunity in Luxembourg (CON-VINCE)
O. Tsurkalenko, D. Bulaev, M. P. O'Sullivan, Chantal J. Snoeck +148 more
2024BMC Infectious Diseases9 citations Open access
Semantic Scholar
COBREXA.jl: constraint-based reconstruction and exascale analysis
Miroslav Kratochvíl, Laurent Heirendt, S. Wilken, T. Pusa +8 more
2021bioRxiv9 citations Open access
Semantic Scholar
DAISY: A Data Information System for accountability under the General Data Protection Regulation
Regina Becker, Pinar Alper, Valentin Grouès, Sandrine Munoz +6 more
2019GigaScience9 citations Open access
Semantic Scholar
What does your cell really do? Model-based assessment of mammalian cells metabolic functionalities using omics data
A. Richelle, Benjamin P. Kellman, Alexander T. Wenzel, Austin W.T. Chiang +16 more
2020bioRxiv7 citations Open access
Semantic Scholar
Cardiovascular history and risk of idiopathic Parkinson’s disease: a cross-sectional observational study
Shubhra Acharya, A. Lumley, Yvan Devaux, Muhammad Ali +121 more
2024BMC Neuroscience6 citations Open access
Semantic Scholar
DS-PACK: Tool assembly for the end-to-end support of controlled access human data sharing
Pinar Alper, V. Dĕd, Sascha Herzinger, Valentin Grouès +12 more
2024Scientific Data3 citations Open access
Semantic Scholar
Light microscopy applications in systems biology: opportunities and challenges
P. Antony, C. Trefois, A. Stojanović, A. Baumuratov +1 more
2013Cell Communication and Signaling3 citations Open access
Semantic Scholar
Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data
Sascha Herzinger, Valentin Grouès, Wei Gu, Venkata P. Satagopam +3 more
2018GigaScience2 citations Open access
Semantic Scholar
Automated nuclei clump splitting by combining local concavity orientation and graph partitioning
Siddharth Samsi, C. Trefois, P. Antony, A. Skupin
2014IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)2 citations
Semantic Scholar
Encryption-based access control for building management
L. Gomez, Annett Laube, Vincent Ribière, A. Sorniotti +3 more
2008International Conference on Mobile and Ubiquitous Systems: Networking and Services2 citations Open access
Semantic Scholar
Publisher Correction: Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes
L. Pavelka, A. Rauschenberger, Z. Landoulsi, S. Pachchek +123 more
2022npj Parkinson's Disease1 citations Open access
Semantic Scholar
Provenance-Enabled Stewardship of Human Data in the GDPR Era
Pinar Alper, Regina Becker, Venkata P. Satagopam, C. Trefois +3 more
2018International Provenance and Annotation Workshop1 citations
Semantic Scholar
Evaluation of Cell Line Suitability for Disease Specific Perturbation Experiments
Maria Biryukov, P. Antony, Abhimanyu Krishna, P. May +1 more
2015European Conference on Data Analysis1 citations Open access
Semantic Scholar
Screening Luxembourg's older general population for probable REM sleep behaviour disorder with a nationwide online survey
Gloria A. Aguayo, Eduardo Rosales Jubal, Gilles van Cutsem, A. Schritz +128 more
2026Scientific Reports0 citations Open access
Semantic Scholar
Correction: Creation of a pandemic memory by tracing COVID-19 infections and immunity in Luxembourg (CON-VINCE)
O. Tsurkalenko, D. Bulaev, M. P. O'Sullivan, Chantal J. Snoeck +148 more
2025BMC Infectious Diseases0 citations Open access
Semantic Scholar
RDM Services at the Luxembourg National Data Service
Wei Gu, C. Trefois, Pinar Alper, Danielle Welter +7 more
2023CoRDI0 citations Open access
Semantic Scholar
SI: Interrogating the effect of enzyme kinetics on metabolism using 1 differentiable constraint-based models
S. Wilken, Mathieu Besançon, Miroslav Kratochvíl, Chilperic Armel Foko Kuate +3 more
20220 citations
Semantic Scholar
Reproducible websites: a state-of-the-art ecosystem
Jacek Lebioda, Laurent Heirendt, Y. Jarosz, C. Trefois +5 more
20200 citations Open access
Semantic Scholar
GigaSOM.jl: Huge-scale, high-performance flow cytometry clustering with Julia
O. Hunewald, Miroslav Kratochvíl, Laurent Heirendt, C. Trefois +7 more
20200 citations Open access
Semantic Scholar
ELIXIR-LU: Overview and updates on activities
Venkata P. Satagopam, C. Trefois, Pinar Alper, Regina Becker +6 more
20200 citations Open access
Semantic Scholar
DAISY: A tool to document biomedical research data processing for accountability under the GDPR
Pinar Alper, Regina Becker, Valentin Grouès, Sandrine Munoz +6 more
20190 citations Open access
Semantic Scholar
Standardisation in life-science research - Making the case for harmonization to improve communication and sharing of data amongst researchers
Susanne Hollmann, B. Regierer, D. D'Elia, K. Gruden +17 more
2018EasyChair Preprints0 citations Open access
Semantic Scholar
ELIXIR-LU : Current node activities
Reinhard Schneider, D. Gerloff, Venkata P. Satagopam, R. Krause +6 more
20180 citations Open access
Semantic Scholar
ARTENOLIS: Automated Reproducibility and Testing Environment for Licensed Software
Laurent Heirendt, Sylvain Arreckx, C. Trefois, Yohan Yarosz +5 more
2017arXiv.org0 citations
Semantic Scholar
Semantic Web Technologies for a Knowledge Base of Biomedical Facts Extracted from Scientific Literature
Valentin Grouès, Maria Biryukov, C. Trefois, Venkata P. Satagopam
2016Workshop on Semantic Web Applications and Tools for Life Sciences0 citations
Semantic Scholar
ANALYSIS OF MITOCHONDRIAL MEMBRANE POTENTIAL IN THROMBOCYTES FROM PARKINSON’S DISEASE PATIENTS
P. Antony, Olga Boyd, C. Trefois, W. Ammerlaan +7 more
20150 citations
Semantic Scholar
Reproducible Research Results R3
C. Trefois, Y. Jarosz, Wei Gu, Venkata P. Satagopam +2 more
20140 citations
Semantic Scholar
Analysis of mitochondrial membrane potential in idiopathic Parkinson's disease: A case-control study
P. Antony, Olga Boyd, C. Trefois, M. Ostaszewski +3 more
20140 citations
Semantic Scholar
Curation of complex molecular pathways of Parkinson's disease as a collaborative scientific community effort
P. Antony, M. Ostaszewski, P. Gawron, C. Trefois +3 more
20140 citations
Semantic Scholar
Detection and characterization of critical transitions in mitochondrial activity via high content screening
C. Trefois
20140 citations
Semantic Scholar
The Parkinson’s Disease Map: a framework for integration, curation and exploration of disease related pathways
C. Trefois
20130 citations
Semantic Scholar
Differentiated SH-SY5Y Cells as PD Model for Mitochondrial Dysfunction: From Whole Genome Sequencing to an Educated Design of High-Throughput Experiments
P. Antony, Abhimanyu Krishna, P. May, C. Trefois +5 more
20130 citations
Semantic Scholar
Constructing a comprehensive map of Parkinson’s disease to elucidate underlying mechanisms of its multifaceted molecular pathology
C. Trefois, Atsushi Fujita, M. Ostaszewski, Yukiko Matsuoka +15 more
20120 citations
Semantic Scholar
Analysis of critical transitions in Parkinson's disease
C. Trefois, P. Antony, A. Baumuratov, Olga Boyd +2 more
20110 citations
Semantic Scholar
Secure Integration of Wireless Sensor Networks into Applications
C. Trefois
20080 citations
Semantic Scholar
Distributed group support systems
Yann Do, Jonathan Kuhn, R. Mange, Piotr Skoczylas +1 more
20070 citations
Semantic Scholar

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Venkata P. Satagopam×24
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Reinhard Schneider×15
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Wei Gu×15
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P. Antony×14
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Valentin Grouès×13

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