P. Gawron

Most-cited papers

1. The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

   Alberto Noronha, J. Modamio, Y. Jarosz, Elisabeth Guerard +28 more

   2018bioRxiv374 citations Open access

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2. PredictProtein - Predicting Protein Structure and Function for 29 Years

   Michael Bernhofer, Christian Dallago, Tim Karl, Venkata P. Satagopam +24 more

   2021bioRxiv214 citations Open access

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3. Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions

   Federico Baldini, Johannes Hertel, E. Sandt, C. Thinnes +110 more

   2020BMC Biology207 citations Open access

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4. MINERVA—a platform for visualization and curation of molecular interaction networks

   P. Gawron, M. Ostaszewski, Venkata P. Satagopam, S. Gebel +7 more

   2016npj Systems Biology and Applications110 citations Open access

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5. Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms

   A. Mazein, M. Ostaszewski, I. Kuperstein, S. Watterson +20 more

   2018npj Systems Biology and Applications102 citations Open access

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6. VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data

   C. Laczny, Tomasz Sternal, Valentin Plugaru, P. Gawron +6 more

   2015Microbiome88 citations Open access

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7. COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

   M. Ostaszewski, A. Niarakis, A. Mazein, I. Kuperstein +135 more

   2021Molecular Systems Biology70 citations Open access

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8. Community-driven roadmap for integrated disease maps

   M. Ostaszewski, S. Gebel, I. Kuperstein, A. Mazein +14 more

   2018Briefings Bioinform.69 citations Open access

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9. ReconMap: an interactive visualization of human metabolism

   Alberto Noronha, A. D. Daníelsdóttir, P. Gawron, F. Jóhannsson +7 more

   2016Bioinform.64 citations Open access

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10. Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes

    M. Calusinska, M. Marynowska, M. Bertucci, Boris Untereiner +10 more

    2020Communications Biology60 citations Open access

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11. Compositional and functional characterisation of biomass-degrading microbial communities in guts of plant fibre- and soil-feeding higher termites

    M. Marynowska, X. Goux, D. Sillam-Dussès, C. Rouland-Lefèvre +6 more

    2020Microbiome54 citations Open access

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12. Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases

    Venkata P. Satagopam, Wei Gu, Serge Eifes, P. Gawron +5 more

    2016Big Data46 citations Open access

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13. How much can we remedy very low learning levels in rural parts of low-income countries? Impact and generalizability of a multi-pronged para-teacher intervention from a cluster-randomized trial in the Gambia

    Alex Eble, Chris Frost, Alpha Camara, Baboucarr Bouy +9 more

    201941 citations Open access

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14. Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

    A. Niarakis, M. Ostaszewski, A. Mazein, I. Kuperstein +73 more

    2024Frontiers in Immunology34 citations Open access

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15. Integrating digital gait data with metabolomics and clinical data to predict outcomes in Parkinson’s disease

    Cyril Brzenczek, Quentin Klopfenstein, T. Hähnel, H. Fröhlich +113 more

    2024npj Digital Medicine32 citations Open access

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16. Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes

    L. Pavelka, A. Rauschenberger, Z. Landoulsi, S. Pachchek +123 more

    2022npj Parkinson's Disease32 citations Open access

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17. RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis

    Vidisha Singh, G. Kalliolias, M. Ostaszewski, Maëva Veyssière +6 more

    2020Database J. Biol. Databases Curation32 citations Open access

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18. Closing the gap between formats for storing layout information in systems biology

    D. Hoksza, P. Gawron, M. Ostaszewski, J. Hasenauer +1 more

    2019Briefings in Bioinformatics32 citations Open access

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19. MINERVA API and plugins: opening molecular network analysis and visualization to the community

    D. Hoksza, P. Gawron, M. Ostaszewski, Ewa Smula +1 more

    2019Bioinform.29 citations Open access

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20. A holobiont approach towards polysaccharide degradation by the highly compartmentalised gut system of the soil-feeding higher termite Labiotermes labralis

    M. Marynowska, D. Sillam-Dussès, Boris Untereiner, Dominika Klimek +5 more

    2023BMC Genomics26 citations Open access

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21. MolArt: a molecular structure annotation and visualization tool

    D. Hoksza, P. Gawron, M. Ostaszewski, Reinhard Schneider

    2018Bioinform.26 citations Open access

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22. Whole genome assembly from 454 sequencing output via modified DNA graph concept

    J. Błażewicz, Marcin Bryja, M. Figlerowicz, P. Gawron +6 more

    2009Comput. Biol. Chem.23 citations

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23. Education as Risk Factor of Mild Cognitive Impairment: The Link to the Gut Microbiome

    Matthias Klee, V. Aho, P. May, A. Heintz-Buschart +122 more

    2024The journal of prevention of Alzheimer's disease21 citations Open access

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24. A hybrid MIP-based large neighborhood search heuristic for solving the machine reassignment problem

    Wojciech Jaśkowski, M. Szubert, P. Gawron

    2015Annals of Operations Research19 citations Open access

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25. A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance

    A. Mazein, M. Acencio, Irina Balaur, Adrien Rougny +10 more

    2023Frontiers in Bioinformatics18 citations Open access

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26. G-DNA - a highly efficient multi-GPU/MPI tool for aligning nucleotide reads

    Wojciech Frohmberg, Michal Kierzynka, J. Błażewicz, P. Gawron +1 more

    201316 citations Open access

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27. COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

    M. Ostaszewski, A. Niarakis, A. Mazein, I. Kuperstein +132 more

    2020bioRxiv12 citations Open access

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28. Quantum Computing for Climate Change Detection, Climate Modeling, and Climate Digital Twin

    Soronzonbold Otgonbaatar, Olli Nurmi, Mikael Johansson, Jarmo M. ̈akel ̈a +6 more

    12 citations

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29. Penetrance of Parkinson’s disease in GBA1 carriers depends on variant severity and polygenic background

    E. Hassanin, Z. Landoulsi, S. Pachchek, Geeta Acharya +112 more

    2025npj Parkinson's Disease10 citations Open access

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30. AsthmaMap: an interactive knowledge repository for mechanisms of asthma.

    A. Mazein, O. Ivanova, Irina Balaur, M. Ostaszewski +21 more

    2020Journal of Allergy and Clinical Immunology10 citations Open access

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31. Creation of a pandemic memory by tracing COVID-19 infections and immunity in Luxembourg (CON-VINCE)

    O. Tsurkalenko, D. Bulaev, M. P. O'Sullivan, Chantal J. Snoeck +148 more

    2024BMC Infectious Diseases9 citations Open access

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32. Programme Dementia Prevention (pdp): A Nationwide Program for Personalized Prevention in Luxembourg

    Valerie E. Schröder, Amna Skrozić, Dorothee Erz, A. Kaysen +21 more

    2024Journal of Alzheimer's Disease9 citations Open access

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33. Exploration and comparison of molecular mechanisms across diseases using MINERVA Net

    P. Gawron, Ewa Smula, R. Schneider, M. Ostaszewski

    2023Protein Science7 citations Open access

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34. COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

    M. Ostaszewski, A. Niarakis, A. Mazein, I. Kuperstein +135 more

    2021Molecular Systems Biology7 citations Open access

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35. Cardiovascular history and risk of idiopathic Parkinson’s disease: a cross-sectional observational study

    Shubhra Acharya, A. Lumley, Yvan Devaux, Muhammad Ali +121 more

    2024BMC Neuroscience6 citations Open access

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36. High-Performance and Disruptive Computing in Remote Sensing: HDCRS—A new Working Group of the GRSS Earth Science Informatics Technical Committee [Technical Committees]

    Gabriele Cavallaro, D. B. Heras, Ze-Bin Wu, M. Maskey +4 more

    2022IEEE Geoscience and Remote Sensing Magazine6 citations Open access

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37. Dna Sequence Assembly Involving an Acyclic Graph Model

    J. Błażewicz, Wojciech Frohmberg, P. Gawron, M. Kasprzak +3 more

    20136 citations Open access

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38. Conjugacy classes of the automorphism group of a tree

    P. Gawron, V. V. Nekrashevich, V. I. Sushchanskiĭ

    19995 citations

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39. Mixed effects models but not t-tests or linear regression detect progression of apathy in Parkinson’s disease over seven years in a cohort: a comparative analysis

    Anne-Marie Hanff, R. Krüger, C. McCrum, C. Ley +111 more

    2024BMC Medical Research Methodology4 citations Open access

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40. Smart Scheduling (SMASCH): multi-appointment scheduling system for longitudinal clinical research studies

    Carlos Vega, P. Gawron, Jacek Lebioda, Valentin Grouès +6 more

    2022JAMIA Open3 citations Open access

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41. Parallel Implementation of the Novel Approach to Genome Assembly

    J. Błażewicz, M. Kasprzak, A. Świercz, M. Figlerowicz +3 more

    20082008 Ninth ACIS International Conference on Software Engineering, Artificial Intelligence, Networking, and Parallel/Distributed Computing3 citations

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42. Visualization of automatically combined disease maps and pathway diagrams for rare diseases

    P. Gawron, D. Hoksza, Janet Piñero, M. Peña-Chilet +12 more

    2023Frontiers Bioinform.2 citations Open access

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43. Targeted biomass degradation by the higher termite gut system - integrative omics applied to host and its gut microbiome

    M. Calusinska, M. Marynowska, M. Bertucci, Boris Untereiner +10 more

    2020bioRxiv2 citations Open access

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44. ReconMap: An interactive visualisation of human metabolism

    Alberto Noronha, A. D. Daníelsdóttir, F. Jóhannsson, Soffía Jónsdóttir +7 more

    20162 citations

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45. LSC Abstract – The AsthmaMap: Towards a community-driven reconstruction of asthma-relevant pathways and networks

    A. Mazein, B. de Meulder, D. Lefaudeux, R. Knowles +17 more

    20162 citations

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46. A new algorithm for genome assembly from short reads

    J. Błażewicz, M. Bryja, M. Figlerowicz, P. Gawron +5 more

    2008International Conference on Information Technology2 citations

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47. Data-driven clinical decision support tool for diagnosing mild cognitive impairment in Parkinson’s disease

    Gabriel Martínez Tirado, Patricia Martins Conde, S. Sapienza, H. Fröhlich +111 more

    2026npj Parkinson's Disease1 citations Open access

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48. A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms

    A. Niarakis, M. Ostaszewski, A. Mazein, I. Kuperstein +73 more

    2022bioRxiv1 citations Open access

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49. Publisher Correction: Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes

    L. Pavelka, A. Rauschenberger, Z. Landoulsi, S. Pachchek +123 more

    2022npj Parkinson's Disease1 citations Open access

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50. MINERVA, A Platform for the Exploration of Disease Maps

    M. Ostaszewski, P. Gawron, D. Hoksza, A. Mazein +4 more

    20211 citations Open access

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