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Samik Ghosh · SciRah

Researcher profile · Semantic Scholar

Samik Ghosh

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Samik Ghosh — researcher profile on SciRah

h-index: 28
Works: 98
Citations: 4,953

Most-cited papers

The Systems Biology Graphical Notation
N. Le Novère, M. Hucka, H. Mi, S. Moodie +35 more
2009Nature Biotechnology977 citations
Semantic Scholar
Combining Machine Learning Systems and Multiple Docking Simulation Packages to Improve Docking Prediction Reliability for Network Pharmacology
Kun-Yi Hsin, Samik Ghosh, H. Kitano
2013PLoS ONE575 citations Open access
Semantic Scholar
Lenvatinib plus anti-PD-1 antibody combination treatment activates CD8+ T cells through reduction of tumor-associated macrophage and activation of the interferon pathway
Yu Kato, Kimiyo Tabata, Takayuki Kimura, Ayako Yachie-Kinoshita +12 more
2019PLoS ONE434 citations Open access
Semantic Scholar
Channel Assignment Strategies for Multiradio Wireless Mesh Networks: Issues and Solutions
H. Skalli, Samik Ghosh, S. Das, L. Lenzini +1 more
2007IEEE Communications Magazine332 citations
Semantic Scholar
Software for systems biology: from tools to integrated platforms
Samik Ghosh, Yukiko Matsuoka, Y. Asai, Kun-Yi Hsin +1 more
2011Nature reviews genetics279 citations
Semantic Scholar
Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map
Kazuhiro A. Fujita, M. Ostaszewski, Yukiko Matsuoka, Samik Ghosh +15 more
2013Molecular Neurobiology267 citations Open access
Semantic Scholar
A comprehensive map of the mTOR signaling network
E. Caron, Samik Ghosh, Yukiko Matsuoka, Dariel Ashton-Beaucage +5 more
2010Molecular Systems Biology250 citations Open access
Semantic Scholar
Microbial activity on the microstructure of bacteria modified mortar
Samik Ghosh, M. Biswas, B. Chattopadhyay, S. Mandal
2009198 citations
Semantic Scholar
AlzPathway: a comprehensive map of signaling pathways of Alzheimer’s disease
S. Mizuno, R. Iijima, S. Ogishima, M. Kikuchi +6 more
2012BMC Systems Biology135 citations Open access
Semantic Scholar
A comprehensive map of the influenza A virus replication cycle
Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, A. Eisfeld +10 more
2013BMC Systems Biology127 citations Open access
Semantic Scholar
Theoretical Biology and Medical Modelling
H. Harrington, Kenneth L. Ho, Samik Ghosh, KC Tung
2009101 citations
Semantic Scholar
CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data
J. Shoemaker, Tiago J. S. Lopes, Samik Ghosh, Yukiko Matsuoka +2 more
2012BMC Genomics94 citations Open access
Semantic Scholar
Symmetrical peripheral gangrene: a prospective study of 14 consecutive cases in a tertiary‐care hospital in eastern India
Samik Ghosh, D. Bandyopadhyay, A. Ghosh
2010Journal of the European Academy of Dermatology and Venereology79 citations
Semantic Scholar
Modeling and simulation using CellDesigner.
Yukiko Matsuoka, A. Funahashi, Samik Ghosh, H. Kitano
2014Methods in molecular biology72 citations
Semantic Scholar
A comprehensive molecular interaction map of the budding yeast cell cycle
Kazunari Kaizu, Samik Ghosh, Yukiko Matsuoka, H. Moriya +2 more
2010Molecular Systems Biology68 citations Open access
Semantic Scholar
Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer’s disease
S. Tsuji, T. Hase, Ayako Yachie-Kinoshita, Taiko Nishino +6 more
2020Alzheimer's Research & Therapy60 citations Open access
Semantic Scholar
Bioinformatics Applications Note Systems Biology Payao: a Community Platform for Sbml Pathway Model Curation
Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, H. Kitano
57 citations
Semantic Scholar
Digital health revolution: perfect storm or perfect opportunity for pharmaceutical R&D?
N. Hird, Samik Ghosh, H. Kitano
2016Drug Discovery Today56 citations
Semantic Scholar
Social engineering for virtual 'big science' in systems biology.
H. Kitano, Samik Ghosh, Yukiko Matsuoka
2011Nature Chemical Biology43 citations
Semantic Scholar
A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data
Yongli Hu, T. Hase, Hui-Peng Li, Shyam Prabhakar +4 more
2016BMC Genomics42 citations Open access
Semantic Scholar
Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks
T. Hase, Samik Ghosh, R. Yamanaka, H. Kitano
2013PLoS Comput. Biol.40 citations Open access
Semantic Scholar
Analysis of water-soluble ions and their precursor gases over diurnal cycle
Zang-Ho Shon, Samik Ghosh, Ki-Hyun Kim, Sang-Keun Song +2 more
201340 citations
Semantic Scholar
Characterization and comparison of polyurethane networks prepared using soybean‐based polyols with varying hydroxyl content and their blends with petroleum‐based polyols
Todd W. Pechar, S. Sohn, G. Wilkes, Samik Ghosh +3 more
200636 citations
Semantic Scholar
Network analyses based on comprehensive molecular interaction maps reveal robust control structures in yeast stress response pathways
Eiryo Kawakami, V. Singh, Kazuko Matsubara, Takashi Ishii +12 more
2016npj Systems Biology and Applications34 citations Open access
Semantic Scholar
Impact of the eKutir ICT-enabled social enterprise and its distributed micro-entrepreneur strategy on fruit and vegetable consumption: A quasi-experimental study in rural and urban communities in Odisha, India
L. Dubé, Cameron McRae, Yun-Hsuan Wu, Samik Ghosh +7 more
202033 citations Open access
Semantic Scholar
Precise Temporal Profiling of Signaling Complexes in Primary Cells Using SWATH Mass Spectrometry
E. Caron, Romain Roncagalli, T. Hase, W. Wolski +16 more
2017Cell Reports32 citations Open access
Semantic Scholar
A Survey on House Sparrow Population Decline at Bandel, West Bengal, India
Samik Ghosh, Ki-Hyun Kim, R. Bhattacharya
201031 citations Open access
Semantic Scholar
GaMa: an evolutionary algorithmic approach for the design of mesh-based radio access networks
Samik Ghosh, P. Ghosh, K. Basu, S. Das
2005IEEE Conference on Local Computer Networks29 citations
Semantic Scholar
Consistent design schematics for biological systems: standardization of representation in biological engineering
Yukiko Matsuoka, Samik Ghosh, H. Kitano
2009Journal of the Royal Society Interface26 citations Open access
Semantic Scholar
iSimBioSys: a discrete event simulation platform for 'in silico' study of biological systems
Samik Ghosh, P. Ghosh, K. Basu, S. Das +1 more
2006Annual Simulation Symposium23 citations
Semantic Scholar
Erratum: The Systems Biology Graphical Notation
N. Le Novère, M. Hucka, H. Mi, S. Moodie +35 more
2009Nature Biotechnology20 citations Open access
Semantic Scholar
Some Insights into Analytical Bias Involved in the Application of Grab Sampling for Volatile Organic Compounds: A Case Study against Used Tedlar Bags
Samik Ghosh, Ki-Hyun Kim, J. Sohn
2011TheScientificWorldJournal19 citations Open access
Semantic Scholar
Synthesis and characterization of triglyceride-based polyols and tack-free coatings via the air oxidation of soy oil
A. Fornof, E. Onah, Samik Ghosh, C. Frazier +3 more
200619 citations
Semantic Scholar
An analytical model to estimate the time taken for cytoplasmic reactions for stochastic simulation of complex biological systems
P. Ghosh, Samik Ghosh, K. Basu, S. Das +1 more
2006IEEE International Conference on Granular Computing19 citations
Semantic Scholar
Elucidation of the molecular mechanisms underlying adverse reactions associated with a kinase inhibitor using systems toxicology
Takahiro Amemiya, Masashi Honma, Yoshiaki Kariya, Samik Ghosh +8 more
2015npj Systems Biology and Applications18 citations Open access
Semantic Scholar
Toward an integrated software platform for systems pharmacology
Samik Ghosh, Yukiko Matsuoka, Y. Asai, Kun-Yi Hsin +1 more
2013Biopharmaceutics & drug disposition18 citations Open access
Semantic Scholar
AI-driven laboratory workflows enable operation in the age of social distancing
D. Marescotti, Chandrasekaran Narayanamoorthy, Filipe Bonjour, Ken Kuwae +4 more
2021SLAS technology17 citations Open access
Semantic Scholar
Oscillation of cAMP and Ca2+ in cardiac myocytes: a systems biology approach
Takehisa Kamide, S. Okumura, Samik Ghosh, Y. Shinoda +13 more
2015Journal of Physiological Sciences17 citations Open access
Semantic Scholar
Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure
S. Boué, Thomas E. Exner, Samik Ghosh, V. Belcastro +8 more
2017F1000Research14 citations Open access
Semantic Scholar
A Versatile Platform for Multilevel Modeling of Physiological Systems : SBML-PHML Hybrid Modeling and Simulation (Special Editorials : Five Selected Articles in ABE)
Y. Asai, T. Abe, H. Oka, M. Okita +6 more
201412 citations Open access
Semantic Scholar
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes
P. Ghosh, Samik Ghosh, K. Basu, S. Das
20072007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology12 citations
Semantic Scholar
A Stochastic model to estimate the time taken for Protein-Ligand Docking
P. Ghosh, Samik Ghosh, K. Basu, S. Das +1 more
20062006 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology11 citations
Semantic Scholar
Stochastic Modeling of Cytoplasmic Reactions in Complex Biological Systems
P. Ghosh, Samik Ghosh, K. Basu, S. Das +1 more
2006Communication Systems and Applications11 citations
Semantic Scholar
Effectiveness of community-based treatment programs for treatment of uncomplicated severe acute malnourished children aged 6–59 months using locally produced nutrient dense foods: protocol for a multicentric longitudinal quasi-experimental study
Praveen Kumar, R. Sinha, Abner Daniel, Hemang Shah +24 more
2021BMC Nutrition10 citations Open access
Semantic Scholar
Discrete diffusion models to study the effects of Mg2+ concentration on the PhoPQ signal transduction system
P. Ghosh, Samik Ghosh, K. Basu, S. Das +1 more
2010BMC Genomics10 citations Open access
Semantic Scholar
iSimBioSys: an 'in silico' discrete event simulation framework for modeling biological systems
Samik Ghosh, P. Ghosh, K. Basu, S. Das
20052005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05)10 citations
Semantic Scholar
Fruit growth and development of Burmese grape (Baccaurea sapida Müell. Arg.)
S. Pradhan, N. Bhowmick, P. Deb, A. Ghosh +4 more
2015Indian Journal of Plant Physiology9 citations
Semantic Scholar
Holding time estimation for reactions in stochastic event-based simulation of complex biological systems
P. Ghosh, Samik Ghosh, K. Basu, S. Das
2008Simulation modelling practice and theory9 citations
Semantic Scholar
"MeshUp": Self-organizing mesh-based topologies for next generation radio access networks
Samik Ghosh, K. Basu, S. Das
2007Ad hoc networks8 citations
Semantic Scholar
A diffusion model to estimate the inter-arrival time of charged molecules in stochastic event based modeling of complex biological networks
P. Ghosh, Samik Ghosh, K. Basu, S. Das
20052005 IEEE Computational Systems Bioinformatics Conference - Workshops (CSBW'05)8 citations
Semantic Scholar

Frequent co-authors

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H. Kitano×24
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H. Kitano — researcher profile on SciRah
Yukiko Matsuoka×17
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Yukiko Matsuoka — researcher profile on SciRah
S. Das×12
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S. Das — researcher profile on SciRah
K. Basu×11
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K. Basu — researcher profile on SciRah

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P. Ghosh — researcher profile on SciRah

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T. Hase — researcher profile on SciRah

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S. Daefler — researcher profile on SciRah

A. Funahashi×3

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A. Funahashi — researcher profile on SciRah

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Kun-Yi Hsin — researcher profile on SciRah

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Y. Asai — researcher profile on SciRah

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Ki-Hyun Kim — researcher profile on SciRah

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N. Le Novère — researcher profile on SciRah