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Olga Dudchenko · SciRah

Researcher profile · Semantic Scholar

Olga Dudchenko

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Olga Dudchenko — researcher profile on SciRah

h-index: 26
Works: 88
Citations: 5,941

Most-cited papers

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko, S. Batra, A. Omer, Sarah K. Nyquist +7 more
2016Science2,525 citations Open access
Semantic Scholar
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
D. Bertioli, J. Jenkins, J. Clevenger, Olga Dudchenko +46 more
2019Nature Genetics587 citations Open access
Semantic Scholar
Improved reference genome of Aedes aegypti informs arbovirus vector control
B. Matthews, Olga Dudchenko, Sarah B. Kingan, S. Koren +68 more
2018Nature498 citations Open access
Semantic Scholar
The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000
Olga Dudchenko, M. Shamim, S. Batra, Neva C. Durand +17 more
2018bioRxiv351 citations Open access
Semantic Scholar
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture
E. Darrow, Miriam H. Huntley, Olga Dudchenko, Elena K. Stamenova +10 more
2016Proceedings of the National Academy of Sciences of the United States of America269 citations Open access
Semantic Scholar
3D genomics across the tree of life identifies condensin II as a determinant of architecture type
Claire Hoencamp, Olga Dudchenko, Ahmed M. O. Elbatsh, Sumitabha Brahmachari +60 more
2021Science206 citations Open access
Semantic Scholar
The ENCODE Uniform Analysis Pipelines
B. Hitz, Jin-Wook Lee, O. Jolanki, Meenakshi S. Kagda +56 more
2023bioRxiv143 citations Open access
Semantic Scholar
Chromatin alternates between A and B compartments at kilobase scale for subgenic organization
Hannah L. Harris, Hui-Ya Gu, M. Olshansky, Ailun Wang +26 more
2023Nature Communications143 citations Open access
Semantic Scholar
Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)
P. Larsen, R. Harris, Yue Liu, S. Murali +16 more
2017BMC Biology85 citations Open access
Semantic Scholar
The gene-rich genome of the scallop Pecten maximus
N. Kenny, Shane A. McCarthy, Olga Dudchenko, Katherine James +17 more
2020bioRxiv69 citations Open access
Semantic Scholar
Cicer super-pangenome provides insights into species evolution and agronomic trait loci for crop improvement in chickpea
A. Khan, Vanika Garg, Shuai Sun, Saurabh Gupta +21 more
2024Nature Genetics62 citations
Semantic Scholar
Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement
Vanika Garg, Olga Dudchenko, Jin-Peng Wang, A. Khan +42 more
2021Journal of Advanced Research57 citations Open access
Semantic Scholar
Genome-wide diversity in the California condor tracks its prehistoric abundance and decline.
Jacqueline A. Robinson, Rauri C. K. Bowie, Olga Dudchenko, Erez Lieberman Aiden +5 more
2021Current Biology55 citations Open access
Semantic Scholar
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C
M. Field, B. Rosen, Olga Dudchenko, E. Chan +16 more
2020GigaScience54 citations Open access
Semantic Scholar
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome
Richard J. Edwards, M. Field, James M. Ferguson, Olga Dudchenko +15 more
2020bioRxiv43 citations Open access
Semantic Scholar
Convergent and complementary selection shaped gains and losses of eusociality in sweat bees
Beryl M. Jones, B. E. Rubin, Olga Dudchenko, Callum Kingwell +25 more
2023Nature Ecology & Evolution40 citations Open access
Semantic Scholar
The Australian dingo is an early offshoot of modern breed dogs
M. Field, Sonu Yadav, Olga Dudchenko, Meera Esvaran +21 more
2022Science Advances37 citations Open access
Semantic Scholar
A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing
Per A. Adastra, Neva C. Durand, Namita Mitra, Saul Godinez Pulido +11 more
2020bioRxiv37 citations Open access
Semantic Scholar
Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample
Marcela Sandoval-Velasco, Olga Dudchenko, J. A. Rodríguez, Cynthia Pérez Estrada +52 more
2023bioRxiv34 citations Open access
Semantic Scholar
A chromosome-level genome sequence assembly of the red raspberry (Rubus idaeus L.)
J. Davik, D. Røen, E. Lysøe, M. Buti +5 more
2022PLoS ONE34 citations Open access
Semantic Scholar
Chromosome size affects sequence divergence between species through the interplay of recombination and selection
A. Tigano, Ruqayya Khan, A. Omer, D. Weisz +7 more
2021bioRxiv33 citations Open access
Semantic Scholar
Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild
E. Humble, P. Dobrynin, H. Senn, Justin Chuven +13 more
2019bioRxiv33 citations Open access
Semantic Scholar
Chromosome-level genome of Schistosoma haematobium underpins genome-wide explorations of molecular variation
Andreas J. Stroehlein, Pasi K. Korhonen, V. V. Lee, Stuart A. Ralph +17 more
2022PLoS Pathogens30 citations Open access
Semantic Scholar
A pan‐genome and chromosome‐length reference genome of narrow‐leafed lupin (Lupinus angustifolius) reveals genomic diversity and insights into key industry and biological traits
Gagan Garg, L. Kamphuis, P. Bayer, P. Kaur +8 more
2022The Plant Journal30 citations Open access
Semantic Scholar
Transcriptional and functional consequences of alterations to MEF2C and its topological organization in neuronal models
Kiana Mohajeri, Rachita Yadav, E. D'Haene, Philip M. Boone +19 more
2022bioRxiv29 citations Open access
Semantic Scholar
Improved Aedes aegypti mosquito reference genome assembly enables biological discovery and vector control
B. Matthews, Olga Dudchenko, S. Kingan, S. Koren +68 more
2017bioRxiv28 citations Open access
Semantic Scholar
Fine-mapping of nuclear compartments using ultra-deep Hi-C shows that active promoter and enhancer elements localize in the active A compartment even when adjacent sequences do not
Hui-Ya Gu, Hannah L. Harris, M. Olshansky, Yossi Eliaz +21 more
2021bioRxiv26 citations Open access
Semantic Scholar
High-quality reference genome for Clonorchis sinensis.
N. Young, Andreas J. Stroehlein, Liina Kinkar, Tao Wang +8 more
2021Genomics26 citations Open access
Semantic Scholar
A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. “Hillquist”)
Tomáš Brůna, R. Aryal, Olga Dudchenko, D. Sargent +22 more
2022bioRxiv25 citations Open access
Semantic Scholar
Emx2 underlies the development and evolution of marsupial gliding membranes
J. A. Moreno, Olga Dudchenko, Charles Y. Feigin, Sarah A. Mereby +26 more
2024Nature23 citations Open access
Semantic Scholar
Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater
D. A. Robledo‐Ruiz, Han M. Gan, P. Kaur, Olga Dudchenko +10 more
2022GigaScience23 citations Open access
Semantic Scholar
Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues
Vinícius G. Contessoto, Olga Dudchenko, Erez Lieberman Aiden, P. Wolynes +2 more
2022bioRxiv23 citations Open access
Semantic Scholar
A Chromosome-length Assembly of the Black Petaltail (Tanypteryx hageni) Dragonfly
E. Tolman, Christopher D Beatty, Jonas Bush, M. Kohli +9 more
2022bioRxiv19 citations Open access
Semantic Scholar
Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly
P. Kaur, Christopher Lui, Olga Dudchenko, R. Nandety +5 more
2021International Journal of Molecular Sciences19 citations Open access
Semantic Scholar
The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution
Matthew H. van Dam, A. Cabras, J. B. Henderson, Andrew J. Rominger +5 more
2021PLoS Genetics18 citations Open access
Semantic Scholar
The swan genome and transcriptome, it is not all black and white
A. Karawita, Yuanyuan Cheng, K. Chew, Arjun Challgula +42 more
2022bioRxiv17 citations Open access
Semantic Scholar
Running title : desert adaptation Peromyscus Limited evidence for parallel evolution among desert adapted Peromyscus deer mice
J. Colella, A. Tigano, Olga Dudchenko, A. Omer +5 more
202117 citations
Semantic Scholar
Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum
Olga Dudchenko, Melanie Pham, Christopher Lui, S. Batra +8 more
2018bioRxiv17 citations Open access
Semantic Scholar
Genomic signatures of barley breeding for environmental adaptation to the new continents
Haifei Hu, Penghao Wang, T. Angessa, Xiao-Qi Zhang +22 more
2023Plant Biotechnology Journal14 citations Open access
Semantic Scholar
The genome sequence of the Eurasian river otter, Lutra lutra Linnaeus 1758
D. Mead, F. Hailer, Elizabeth J Chadwick, Roberto Portela Miguez +18 more
2020Wellcome Open Research14 citations Open access
Semantic Scholar
A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population
Aryn P. Wilder, Olga Dudchenko, Caitlin J. Curry, M. Korody +12 more
2022Genome Biology and Evolution13 citations Open access
Semantic Scholar
The Sensory Shark: High-quality Morphological, Genomic and Transcriptomic Data for the Small-spotted Catshark Scyliorhinus Canicula Reveal the Molecular Bases of Sensory Organ Evolution in Jawed Vertebrates
Hélène Mayeur, J. Leyhr, J. Mulley, Nicolas Leurs +33 more
2024Molecular biology and evolution11 citations Open access
Semantic Scholar
Whole genome analysis of clouded leopard species reveals an ancient divergence and distinct demographic histories
Madeline Bursell, R. Dikow, H. Figueiró, Olga Dudchenko +7 more
2022iScience10 citations Open access
Semantic Scholar
The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758
D. Mead, Kathryn Fingland, R. Cripps, Roberto Portela Miguez +21 more
2020Wellcome Open Research10 citations Open access
Semantic Scholar
Fitness benefits of genetic rescue despite chromosomal differences in an endangered pocket mouse.
Aryn P. Wilder, D. Shier, S. D. King, Olga Dudchenko +12 more
2025Science9 citations
Semantic Scholar
Improved high quality sand fly assemblies enabled by ultra low input long read sequencing
Michelle Huang, S. Kingan, Douglas A. Shoue, O. Nguyen +13 more
2024Scientific Data9 citations Open access
Semantic Scholar
Balanced chromosomal rearrangements offer insights into coding and noncoding genomic features associated with developmental disorders
Chelsea Lowther, M. Mehrjouy, Ryan L. Collins, M. Bak +151 more
2022medRxiv8 citations Open access
Semantic Scholar
De novo chromosome-length assembly of the mule deer (Odocoileus hemionus) genome
S. Lamb, A. M. Taylor, Tabitha A. Hughes, B. McMillan +7 more
2021bioRxiv8 citations Open access
Semantic Scholar
Chromosome-length genome assembly of Teladorsagia circumcincta – a globally important helminth parasite in livestock
Shamshad ul Hassan, E. Chua, E. Paz, Chin Y. Tay +6 more
2023BMC Genomics7 citations Open access
Semantic Scholar
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
J. Ballard, M. Field, Richard J. Edwards, L. Wilson +12 more
2023bioRxiv7 citations Open access
Semantic Scholar

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