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Sarah K. Nyquist · SciRah

Researcher profile · Semantic Scholar

Sarah K. Nyquist

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Sarah K. Nyquist — researcher profile on SciRah

h-index: 17
Works: 51
Citations: 7,132

Most-cited papers

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko, S. Batra, A. Omer, Sarah K. Nyquist +7 more
2016Science2,525 citations Open access
Semantic Scholar
SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues
Carly G. K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, I. Mbano +111 more
2020Cell2,176 citations Open access
Semantic Scholar
Allergic inflammatory memory in human respiratory epithelial progenitor cells
J. Ordovas-Montañes, D. Dwyer, Sarah K. Nyquist, K. Buchheit +14 more
2018Nature528 citations Open access
Semantic Scholar
The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000
Olga Dudchenko, M. Shamim, S. Batra, Neva C. Durand +17 more
2018bioRxiv351 citations Open access
Semantic Scholar
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C. Muus, M. Luecken, G. Eraslan, L. Sikkema +110 more
2021Nature Medicine326 citations Open access
Semantic Scholar
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
C. Muus, M. Luecken, G. Eraslan, Avinash Waghray +100 more
2020bioRxiv255 citations Open access
Semantic Scholar
Multimodal profiling of lung granulomas in macaques reveals cellular correlates of tuberculosis control
H. Gideon, T. Hughes, C. Tzouanas, M. Wadsworth +39 more
2022Immunity222 citations Open access
Semantic Scholar
Integrated Single-Cell Analysis of Multicellular Immune Dynamics during Hyper-Acute HIV-1 Infection
S. Kazer, T. Aicher, Daniel M. Muema, Shaina L. Carroll +17 more
2020Nature Medicine138 citations Open access
Semantic Scholar
Human airway mast cells proliferate and acquire distinct inflammation-driven phenotypes during type 2 inflammation
D. Dwyer, J. Ordovas-Montañes, Samuel J. Allon, K. Buchheit +18 more
2021Science immunology131 citations Open access
Semantic Scholar
Computational Methods for Single-Cell RNA Sequencing
Brian Hie, Joshua M. Peters, Sarah K. Nyquist, A. Shalek +2 more
202085 citations Open access
Semantic Scholar
CD8+ lymphocytes are critical for early control of tuberculosis in macaques
Caylin G. Winchell, Sarah K. Nyquist, M. Chao, Pauline A. Maiello +23 more
2023Journal of Experimental Medicine70 citations Open access
Semantic Scholar
SARS-CoV-2 Receptor ACE2 is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Enriched in Specific Cell Subsets Across Tissues
Carly G. K. Ziegler, Samuel J. Allon, Sarah K. Nyquist, I. Mbano +42 more
2020Social Science Research Network70 citations
Semantic Scholar
Cellular and transcriptional diversity over the course of human lactation
Sarah K. Nyquist, Patricia Gao, Tessa K. J. Haining, M. Retchin +9 more
2022Proceedings of the National Academy of Sciences of the United States of America64 citations Open access
Semantic Scholar
CD4+ T cells re-wire granuloma cellularity and regulatory networks to promote immunomodulation following Mtb reinfection
J. Bromley, S. K. Ganchua, Sarah K. Nyquist, Pauline A. Maiello +18 more
2024Immunity33 citations Open access
Semantic Scholar
Improved haplotype inference by exploiting long-range linking and allelic imbalance in RNA-seq datasets
Emily Berger, Deniz Yorukoglu, Lillian Zhang, Sarah K. Nyquist +4 more
2020Nature Communications23 citations Open access
Semantic Scholar
Immunometabolic defects of CD8+ T cells disrupt gut barrier integrity in people with HIV
U. Das Adhikari, Leah M. Froehle, Alexandra N. Pipkin, H. Baharlou +25 more
2025Cell20 citations Open access
Semantic Scholar
High-dose intravenous BCG vaccination induces enhanced immune signaling in the airways
Joshua M. Peters, Edward B. Irvine, Mohau S. Makatsa, Jacob M Rosenberg +15 more
2025Science Advances18 citations
Semantic Scholar
Protective intravenous BCG vaccination induces enhanced immune signaling in the airways
Joshua M. Peters, Edward B. Irvine, Jacob M Rosenberg, M. Wadsworth +13 more
2023bioRxiv17 citations Open access
Semantic Scholar
Hi-C yields chromosome-length scaffolds for a legume genome, Trifolium subterraneum
Olga Dudchenko, Melanie Pham, Christopher Lui, S. Batra +8 more
2018bioRxiv17 citations Open access
Semantic Scholar
HIV specific CD8+ TRM-like cells in tonsils express exhaustive signatures in the absence of natural HIV control
Rabiah Fardoos, Sarah K. Nyquist, O. Asowata, S. Kazer +22 more
2022Frontiers in Immunology14 citations Open access
Semantic Scholar
Single-cell and spatial profiling highlights TB-induced myofibroblasts as drivers of lung pathology
I. Mbano, Nuo Liu, M. Wadsworth, Mark J Chambers +26 more
2026Journal of Experimental Medicine10 citations Open access
Semantic Scholar
Genomic characterization of normal and aberrant human milk production
Yarden Golan, Sarah K. Nyquist, Zhe Liu, Dena Ennis +9 more
2025medRxiv10 citations Open access
Semantic Scholar
Single-cell profiling of tuberculosis lung granulomas reveals functional lymphocyte signatures of bacterial control
H. Gideon, T. Hughes, M. Wadsworth, Ang A. Tu +37 more
2020bioRxiv9 citations Open access
Semantic Scholar
Identification and characterization of the T cell receptor (TCR) repertoire of the cynomolgus macaque (Macaca Fascicularis)
S. Jaiswal, Sarah K. Nyquist, Shayla Boyce, Tasneem Jivanjee +11 more
2022BMC Genomics7 citations Open access
Semantic Scholar
HIV infection drives interferon signaling within intestinal SARS-CoV-2 target cells
Rabiah Fardoos, O. Asowata, N. Herbert, Sarah K. Nyquist +16 more
2021JCI Insight7 citations Open access
Semantic Scholar
CD4+ T cells are homeostatic regulators during Mtb reinfection
J. Bromley, S. K. Ganchua, Sarah K. Nyquist, Pauline A. Maiello +18 more
2023bioRxiv4 citations Open access
Semantic Scholar
CONTRASTIVE LINEAR REGRESSION
Bo-Yang Zhang, Sarah K. Nyquist, Andrew Jones, Barbara E. Engelhardt +1 more
2024Annals of Applied Statistics3 citations Open access
Semantic Scholar
Enriching and Characterizing T Cell Repertoires from 3ʹ Barcoded Single-Cell Whole Transcriptome Amplification Products
Tasneem Jivanjee, Samira I. Ibrahim, Sarah K. Nyquist, G. J. Gatter +6 more
2022Methods in molecular biology3 citations Open access
Semantic Scholar
Integrated Single-Cell Analysis of Multicellular Immune Dynamics during Hyper-Acute HIV-1 Infection
S. Kazer, T. Aicher, Daniel M. Muema, Shaina L. Carroll +12 more
2019bioRxiv3 citations Open access
Semantic Scholar
Integrated ‘omics analysis reveals human milk oligosaccharide biosynthesis programs in human lactocytes
Sarah K. Nyquist, Laasya Devi Annepureddy, Kristija Sejane, Annalee J. Furst +7 more
2025bioRxiv2 citations Open access
Semantic Scholar
CD4+ T cells re-wire granuloma cellularity and regulatory networks to promote immunomodulation following Mtb reinfection
J. Bromley, S. K. Ganchua, Sarah K. Nyquist, Pauline A. Maiello +18 more
2025Immunity2 citations Open access
Semantic Scholar
Reduced cellular diversity and an altered basal progenitor cell state inform epithelial barrier dysfunction in human type 2 immunity
J. Ordovas-Montañes, D. Dwyer, Sarah K. Nyquist, K. Buchheit +11 more
2017bioRxiv2 citations Open access
Semantic Scholar
Integrated ‘omics analysis reveals human milk oligosaccharide biosynthesis programs in human lactocytes
Sarah K. Nyquist, L. Annepureddy, Kristija Sejane, Annalee J. Furst +7 more
2025iScience1 citations Open access
Semantic Scholar
Methods for Preserving Cellular and Milk Fat Globules RNA from Human Milk Samples
Zhengfei Li, Nicole Fischbein, Flora Jin, Sarah K. Nyquist +4 more
2025Research Square1 citations
Semantic Scholar
Expanding the HDAC druggable landscape beyond enzymatic activity
Julien Olivet, Soon-gang Choi, S. Sierra, Tina M. O’Grady +46 more
2023bioRxiv1 citations Open access
Semantic Scholar
Reverse Immunology: An approach to identify Mtb antigens recognized by T cells
S. Jaiswal, Travis Williams, H. Gideon, T. Hughes +6 more
2022Journal of Immunology1 citations
Semantic Scholar
Cellular and transcriptional diversity over the course of human lactation
Sarah K. Nyquist, Patricia Gao, Tessa K. J. Haining, M. Retchin +9 more
2021bioRxiv1 citations Open access
Semantic Scholar
Correction: Single-cell and spatial profiling highlights TB-induced myofibroblasts as drivers of lung pathology
Ian M Mbano, Nuo Liu, M. Wadsworth, Mark J Chambers +26 more
2026Journal of Experimental Medicine0 citations
Semantic Scholar
Machine learning and statistical methods for molecular quantitative trait loci.
Barbara E. Engelhardt, J. Weinstock, Sarah K. Nyquist, A. Battle
2026Nature reviews genetics0 citations
Semantic Scholar
Abstract 6776: Targeting non-enzymatic HDAC -mediated repression reveals a selective stress-adaptive mechanism for cancer therapy
O. Debnath, Julien Olivet, Soon-gang Choi, Yasmine Bramerloo +25 more
2026Cancer Research0 citations
Semantic Scholar
Methods for Preserving Human Milk Cellular and Milk Fat Globule RNA
Zhengfei Li, Nicole Fischbein, Flora Jin, W. Mui +8 more
2026Journal of mammary gland biology and neoplasia0 citations Open access
Semantic Scholar
Single-cell profiling reveals a role for tuberculosis-induced myofibroblasts in the immunopathology of infected lungs 3060
Nuo Liu, Ian M Mbano, Marc Wardsworth, Mark J Chambers +25 more
2025Journal of Immunology0 citations
Semantic Scholar
Systematic deconstruction of myeloid cell signaling in tuberculosis granulomas reveals IFN-γ, TGF-β, and time are associated with conserved myeloid diversity
Joshua M. Peters, H. Gideon, Travis K Hughes, Cal Gunnarson +14 more
2024bioRxiv0 citations Open access
Semantic Scholar
PPARγ downregulation in colonic CD8+ T cells results in epithelial barrier disruption in people with HIV on antiretroviral therapy
U. Das Adhikari, Leah M. Froehle, Alexandra N. Pipkin, H. Baharlou +23 more
2024bioRxiv0 citations Open access
Semantic Scholar
HIV-specific CD8+ T-cells in tonsils express exhaustive TRM-like signatures
Rabiah Fardoos, Sarah K. Nyquist, O. Asowata, S. Kazer +22 more
2021bioRxiv0 citations Open access
Semantic Scholar
Analysis of antiviral therapy in 241 cases with corona virus disease 2019 in Guangzhou
C. Ziegler, Sarah K. Nyquist, I. Mbano, Yu-Ming Cao +15 more
20200 citations
Semantic Scholar
Defining the role of CD8 T cell subsets in tuberculosis in non-human primates
Caylin G. Winchell, Pauline A. Maiello, Sarah K. Nyquist, A. Shalek +2 more
2020Journal of Immunology0 citations
Semantic Scholar
Temporal patterns in single cell immune profile of tuberculosis lung granulomas
H. Gideon, T. Hughes, M. Wadsworth, Sarah K. Nyquist +4 more
2020Journal of Immunology0 citations
Semantic Scholar
Mast cell hyperplasia in human type 2 inflammation: insights from single cell RNA sequencing: 543
D. Dwyer, J. Ordovas-Montañes, Sarah K. Nyquist, K. Buchheit +6 more
2019Journal of Allergy and Clinical Immunology0 citations Open access
Semantic Scholar
For assistance with admission and general questions
D.Innes Williams, Sarah K. Nyquist
20130 citations
Semantic Scholar

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A. Shalek×31
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A. Shalek — researcher profile on SciRah
J. Bromley×14
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M. Wadsworth×13
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H. Gideon×12
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Bonnie Berger×12

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Sarah M. Fortune×11

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Sarah M. Fortune — researcher profile on SciRah

J. Ordovas-Montañes×10

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J. Ordovas-Montañes — researcher profile on SciRah

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S. Kazer — researcher profile on SciRah

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A. Leslie — researcher profile on SciRah

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J. Flynn — researcher profile on SciRah