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A. González · SciRah

Researcher profile · Semantic Scholar

A. González

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A. González — researcher profile on SciRah

h-index: 62
Works: 115
Citations: 73K

Most-cited papers

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology20K citations Open access
Semantic Scholar
Programmable base editing of A•T to G•C in genomic DNA without DNA cleavage
L. Thompson, Jon G. Sanders, D. McDonald, Amnon Amir +299 more
2017Nature5,510 citations Open access
Semantic Scholar
The treatment-naïve microbiome in new-onset Crohn’s disease
D. Gevers, S. Kugathasan, L. Denson, Y. Vázquez-Baeza +28 more
2014Cell Host and Microbe3,008 citations Open access
Semantic Scholar
Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases
J. Lloyd-Price, C. Arze, A. Ananthakrishnan, M. Schirmer +53 more
2019Nature2,771 citations Open access
Semantic Scholar
Normalization and microbial differential abundance strategies depend upon data characteristics
Sophie J. Weiss, Z. Xu, S. Peddada, Amnon Amir +8 more
2017Microbiome1,808 citations Open access
Semantic Scholar
Best practices for analysing microbiomes
R. Knight, Alison Vrbanac, Bryn C. Taylor, A. Aksenov +19 more
2018Nature Reviews Microbiology1,719 citations Open access
Semantic Scholar
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amnon Amir, D. McDonald, J. Navas-Molina, E. Kopylova +7 more
2017mSystems1,625 citations Open access
Semantic Scholar
LSU LSU A communal catalogue reveals Earth's multiscale microbial A communal catalogue reveals Earth's multiscale microbial diversity diversity
L. Thompson, Jon G. Sanders, D. McDonald, Amnon Amir +38 more
20211,253 citations
Semantic Scholar
EMPeror: a tool for visualizing high-throughput microbial community data
Y. Vázquez-Baeza, M. Pirrung, A. González, R. Knight
2013GigaScience1,205 citations Open access
Semantic Scholar
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +106 more
20181,200 citations Open access
Semantic Scholar
Dynamics of the human gut microbiome in Inflammatory Bowel Disease
J. Halfvarson, C. Brislawn, Regina Lamendella, Y. Vázquez-Baeza +10 more
2017Nature Microbiology1,084 citations Open access
Semantic Scholar
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer
M. Dominguez-Bello, Kassandra M. De Jesús-Laboy, N. Shen, L. Cox +9 more
2016Nature Medicine871 citations Open access
Semantic Scholar
American Gut: an Open Platform for Citizen Science Microbiome Research
D. McDonald, E. Hyde, J. Debelius, James T. Morton +54 more
2018mSystems799 citations Open access
Semantic Scholar
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology724 citations Open access
Semantic Scholar
Greengenes2 unifies microbial data in a single reference tree
D. McDonald, Yueyu Jiang, M. Balaban, Kalen Cantrell +21 more
2023Nature Biotechnology666 citations Open access
Semantic Scholar
Qiita: rapid, web-enabled microbiome meta-analysis
A. González, J. Navas-Molina, T. Kościółek, D. McDonald +19 more
2018Nature Methods595 citations Open access
Semantic Scholar
Advancing our understanding of the human microbiome using QIIME
J. Navas-Molina, J. Peralta-Sánchez, A. González, P. McMurdie +12 more
2013Methods in Enzymology546 citations Open access
Semantic Scholar
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets
O. Koren, D. Knights, A. González, L. Waldron +4 more
2013PLoS Comput. Biol.503 citations Open access
Semantic Scholar
QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data
M. Estaki, Lingjing Jiang, N. Bokulich, D. McDonald +10 more
2020Current Protocols in Bioinformatics472 citations Open access
Semantic Scholar
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information
S. Janssen, D. McDonald, A. González, J. Navas-Molina +8 more
2018mSystems458 citations Open access
Semantic Scholar
Meta-analyses of studies of the human microbiota
C. Lozupone, J. Stombaugh, A. González, G. Ackermann +5 more
2013Genome Research413 citations Open access
Semantic Scholar
A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system
J. Metcalf, Laura Wegener Parfrey, A. González, C. Lauber +12 more
2013eLife353 citations Open access
Semantic Scholar
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
O. U. Mason, Nicole Scott, A. González, A. Robbins-Pianka +14 more
2014The ISME Journal350 citations Open access
Semantic Scholar
Rethinking “Enterotypes”
D. Knights, Tonya L. Ward, Christopher E McKinlay, H. Miller +3 more
2014Cell Host and Microbe338 citations Open access
Semantic Scholar
Convergence of gut microbiomes in myrmecophagous mammals
F. Delsuc, J. Metcalf, Laura Wegener Parfrey, Se-Jin Song +2 more
2014Molecular Ecology299 citations Open access
Semantic Scholar
Gut Microbiota Offers Universal Biomarkers across Ethnicity in Inflammatory Bowel Disease Diagnosis and Infliximab Response Prediction
Youlian Zhou, Z. Xu, Yan He, Yun-Sheng Yang +14 more
2018mSystems280 citations Open access
Semantic Scholar
Impact of Dietary Resistant Starch on the Human Gut Microbiome, Metaproteome, and Metabolome
T. V. Maier, M. Lucio, Lang H. Lee, N. Verberkmoes +14 more
2017mBio262 citations Open access
Semantic Scholar
Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection
Alexa R. Weingarden, A. González, Y. Vázquez-Baeza, Sophie J. Weiss +9 more
2015Microbiome259 citations Open access
Semantic Scholar
Balance Trees Reveal Microbial Niche Differentiation
James T. Morton, Jon G. Sanders, R. Quinn, D. McDonald +9 more
2017mSystems246 citations Open access
Semantic Scholar
Immunization with a heat-killed preparation of the environmental bacterium Mycobacterium vaccae promotes stress resilience in mice
S. Reber, Philip H. Siebler, Nina C. Donner, James T. Morton +25 more
2016Proceedings of the National Academy of Sciences of the United States of America220 citations Open access
Semantic Scholar
Antifungal isolates database of amphibian skin-associated bacteria and function against emerging fungal pathogens
Douglas C. Woodhams, R. Alford, R. Antwis, Holly M. Archer +22 more
2015209 citations Open access
Semantic Scholar
The sponge microbiome project
L. Moitinho-Silva, S. Nielsen, Amnon Amir, A. González +36 more
2017GigaScience207 citations Open access
Semantic Scholar
Variation in the Microbiota of Ixodes Ticks with Regard to Geography, Species, and Sex
W. V. Van Treuren, L. Ponnusamy, R. Brinkerhoff, A. González +13 more
2015Applied and Environmental Microbiology186 citations Open access
Semantic Scholar
Exercise Is More Effective at Altering Gut Microbial Composition and Producing Stable Changes in Lean Mass in Juvenile versus Adult Male F344 Rats
Agnieszka Mika, W. V. Van Treuren, A. González, Jonathan J. Herrera +2 more
2015PLoS ONE185 citations Open access
Semantic Scholar
Changes in microbial ecology after fecal microbiota transplantation for recurrent C. difficile infection affected by underlying inflammatory bowel disease
S. Khanna, Y. Vázquez-Baeza, A. González, Sophie J. Weiss +11 more
2017Microbiome150 citations Open access
Semantic Scholar
Suppression of the gut microbiome ameliorates age‐related arterial dysfunction and oxidative stress in mice
Vienna E. Brunt, R. Gioscia-Ryan, James J. Richey, Melanie C. Zigler +12 more
2019Journal of Physiology147 citations Open access
Semantic Scholar
Environmental toxicants in breast milk of Norwegian mothers and gut bacteria composition and metabolites in their infants at 1 month
N. Iszatt, S. Janssen, V. Lenters, C. Dahl +7 more
2019Microbiome147 citations Open access
Semantic Scholar
Tiny microbes, enormous impacts: what matters in gut microbiome studies?
J. Debelius, Se-Jin Song, Y. Vázquez-Baeza, Z. Xu +2 more
2016Genome Biology145 citations Open access
Semantic Scholar
Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs)
Krissi M. Hewitt, F. Mannino, A. González, J. Chase +3 more
2013PLoS ONE140 citations Open access
Semantic Scholar
Visualizing ’omic feature rankings and log-ratios using Qurro
Marcus W. Fedarko, C. Martino, James T. Morton, A. González +5 more
2019bioRxiv134 citations Open access
Semantic Scholar
Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet
C. Manichanh, A. Eck, E. Varela, Joaquim Roca +12 more
2013Gut121 citations Open access
Semantic Scholar
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
Qi-Yun Zhu, Shi Huang, A. González, Imran McGrath +22 more
2022mSystems116 citations Open access
Semantic Scholar
Effects of library size variance, sparsity, and compositionality on the analysis of microbiome data
Sophie J. Weiss, Z. Xu, Amnon Amir, S. Peddada +7 more
201595 citations Open access
Semantic Scholar
Chemically informed analyses of metabolomics mass spectrometry data with Qemistree
A. Tripathi, Y. Vázquez-Baeza, J. Gauglitz, Mingxun Wang +16 more
2020bioRxiv94 citations Open access
Semantic Scholar
Diversity of Rickettsiales in the Microbiome of the Lone Star Tick, Amblyomma americanum
L. Ponnusamy, A. González, W. V. Van Treuren, Sophie J. Weiss +6 more
2013Applied and Environmental Microbiology94 citations Open access
Semantic Scholar
Bringing the Dynamic Microbiome to Life with Animations.
Y. Vázquez-Baeza, A. González, L. Smarr, D. McDonald +3 more
2017Cell Host and Microbe91 citations Open access
Semantic Scholar
Striped UniFrac: enabling microbiome analysis at unprecedented scale.
D. McDonald, Y. Vázquez-Baeza, David Koslicki, Jason McClelland +4 more
2018Nature Methods89 citations Open access
Semantic Scholar
Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome
S. J. Bowers, F. Vargas, A. González, Shannon He +8 more
2020PLoS ONE88 citations Open access
Semantic Scholar
Microbial Diversity in Clinical Microbiome Studies: Sample Size and Statistical Power Considerations: Statistical Power for Microbiome Studies.
C. Casals-Pascual, A. González, Y. Vázquez-Baeza, Se-Jin Song +2 more
2020Gastroenterology79 citations
Semantic Scholar
Microbial biogeography and ecology of the mouth and implications for periodontal diseases
Diana M Proctor, Katie M. Shelef, A. González, Clara Davis-Long +9 more
2019bioRxiv73 citations Open access
Semantic Scholar

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Y. Vázquez-Baeza×26
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D. McDonald×20
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D. McDonald — researcher profile on SciRah
James T. Morton×13
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J. Navas-Molina

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Qi-Yun Zhu — researcher profile on SciRah

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C. Brislawn — researcher profile on SciRah

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