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M. Dillon · SciRah

Researcher profile · Semantic Scholar

M. Dillon

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M. Dillon — researcher profile on SciRah

h-index: 16
Works: 34
Citations: 30K

Most-cited papers

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology20K citations Open access
Semantic Scholar
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
N. Bokulich, B. Kaehler, J. Rideout, M. Dillon +4 more
2018Microbiome5,108 citations Open access
Semantic Scholar
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +106 more
20181,200 citations Open access
Semantic Scholar
RESCRIPt: Reproducible sequence taxonomy reference database management
M. Robeson, D. O'Rourke, B. Kaehler, M. Ziemski +3 more
2020bioRxiv906 citations Open access
Semantic Scholar
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E. Bolyen, J. Rideout, M. Dillon, N. Bokulich +108 more
2019Nature Biotechnology724 citations Open access
Semantic Scholar
Qiita: rapid, web-enabled microbiome meta-analysis
A. González, J. Navas-Molina, T. Kościółek, D. McDonald +19 more
2018Nature Methods595 citations Open access
Semantic Scholar
QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data
M. Estaki, Lingjing Jiang, N. Bokulich, D. McDonald +10 more
2020Current Protocols in Bioinformatics472 citations Open access
Semantic Scholar
q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data
N. Bokulich, M. Dillon, Yi-Long Zhang, J. Rideout +4 more
2018mSystems267 citations Open access
Semantic Scholar
q2-sample-classifier: machine-learning tools for microbiome classification and regression
N. Bokulich, M. Dillon, E. Bolyen, B. Kaehler +2 more
2018bioRxiv162 citations Open access
Semantic Scholar
The international sinonasal microbiome study: A multicentre, multinational characterization of sinonasal bacterial ecology
Sathish Paramasivan, A. Bassiouni, A. Shiffer, M. Dillon +21 more
2020Allergy. European Journal of Allergy and Clinical Immunology77 citations
Semantic Scholar
Diversity of fall armyworm, Spodoptera frugiperda and their gut bacterial community in Kenya
J. Gichuhi, Sevgan Subramanian, F. Khamis, J. van den Berg +366 more
2019bioRxiv65 citations Open access
Semantic Scholar
Microbiotyping the Sinonasal Microbiome
A. Bassiouni, Sathish Paramasivan, A. Shiffer, M. Dillon +21 more
2019bioRxiv33 citations Open access
Semantic Scholar
Optimizing taxonomic classification of marker gene sequences
N. Bokulich, B. Kaehler, J. Rideout, M. Dillon +4 more
201721 citations Open access
Semantic Scholar
q2-longitudinal: a QIIME 2 plugin for longitudinal and paired-sample analyses of microbiome data
N. Bokulich, Yi-Long Zhang, M. Dillon, J. Rideout +4 more
2017bioRxiv20 citations Open access
Semantic Scholar
An Introduction to Applied Bioinformatics: a free, open, and interactive text.
E. Bolyen, J. Rideout, J. Chase, T. Anders Pitman +4 more
2018Journal of Open Source Education18 citations Open access
Semantic Scholar
Facilitating bioinformatics reproducibility with QIIME 2 Provenance Replay
C. Keefe, M. Dillon, Elizabeth Gehret, Chloe Herman +4 more
2023PLoS Comput. Biol.16 citations Open access
Semantic Scholar
Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity
E. Bolyen, M. Dillon, N. Bokulich, Jason T. Ladner +15 more
2020F1000Research15 citations Open access
Semantic Scholar
bokulich-lab/RESCRIPt: 2020.6.0
N. Bokulich, Mike Robeson, M. Dillon, B. Kaehler +2 more
20206 citations
Semantic Scholar
Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops
M. Dillon, E. Bolyen, Anja Adamov, A. Belk +27 more
2021PLoS Comput. Biol.5 citations Open access
Semantic Scholar
The international sinonasal microbiome study (ISMS): a multi-centre, multi-national collaboration characterising the microbial ecology of the sinonasal cavity
Sathish Paramasivan, A. Bassiouni, A. Shiffer, M. Dillon +21 more
2019bioRxiv5 citations Open access
Semantic Scholar
Influence of fecal microbiota transplantation on gut microbiota composition and neuroinflammation of 3xTg‐AD mice
Emily K. Cope, Emily M. Borsom, E. Bolyen, Sierra A. Jaramillo +6 more
2021Alzheimer's & Dementia4 citations
Semantic Scholar
bokulich-lab/RESCRIPt: 2021.2.0
N. Bokulich, M. Dillon, Mike Robeson, M. Ziemski +2 more
20214 citations
Semantic Scholar
A longitudinal study of the unique gut microbiota of 3xTg‐AD mice modeling key AD pathologies
Emily M. Borsom, C. Keefe, Allyson H. Hirsch, Gabrielle M. Orsini +9 more
2021Alzheimer's & Dementia2 citations
Semantic Scholar
Predicting neurodegenerative disease using the unique gut microbiota composition of transgenic mice modeling amyloid‐β plaques and neurofibrillary tangles
Emily M. Borsom, Kathryn A. Conn, C. Keefe, Allyson H. Hirsch +9 more
2022Alzheimer's & Dementia1 citations
Semantic Scholar
bokulich-lab/RESCRIPt: 2021.8.0.dev0
N. Bokulich, Mike Robeson, M. Dillon, M. Ziemski +2 more
20211 citations
Semantic Scholar
Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity [version 1; peer review: 1 approved, 1 approved with reservations]
E. Bolyen, M. Dillon, N. Bokulich, Jason T. Ladner +14 more
20201 citations
Semantic Scholar
The international sinonasal microbiome study (ISMS): a multi- 1 centre, international characterization of sinonasal bacterial ecology 2
Sathish Paramasivan, A. Bassiouni, A. Shiffer, M. Dillon +22 more
20191 citations
Semantic Scholar
Influence of fecal microbiota transplantation on gut microbiota composition in transgenic mice modeling amyloid‐β plaques and neurofibrillary tangles
Emily M. Borsom, C. Keefe, Allyson H. Hirsch, Kathryn A. Conn +7 more
2022Alzheimer's & Dementia0 citations
Semantic Scholar
Peer Review #3 of "The soil microbiomics of intact, degraded and partially-restored semi-arid succulent thicket (Albany Subtropical Thicket) (v0.2)"
Micaela Schagen, Jason Bosch, Jenny Johnson, R. Duker +440 more
20210 citations Open access
Semantic Scholar
Peer Review #2 of "Spatial and temporal dynamics of SAR11 marine bacteria across a nearshore to offshore transect in the tropical Pacific Ocean (v0.2)"
Sarah J. Tucker, K. Freel, E. Monaghan, C. Sullivan +491 more
20210 citations Open access
Semantic Scholar
Peer Review #1 of "The inconsistent microbiota of Budu, the Malaysian fermented anchovy sauce, revealed through 16S amplicon sequencing (v0.1)"
Muhammad Zarul, Hanifah, Zoqratt Corresp, Han-Ming Gan +272 more
20210 citations Open access
Semantic Scholar
Peer Review #1 of "Altered gut microbiota associated with symptom severity in schizophrenia (v0.1)"
Shi-Jia Li, M. Zhuo, Xia Huang, Yuan-Yuan Huang +496 more
20200 citations Open access
Semantic Scholar
Title Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2 ' s q 2-feature-classifier plugin Permalink
N. Bokulich, B. Kaehler, J. Rideout, M. Dillon +4 more
20180 citations
Semantic Scholar
Optimizing taxonomic classification of marker gene 1 sequences 2 3
N. Bokulich, B. Kaehler, J. Rideout, M. Dillon +5 more
20170 citations
Semantic Scholar

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