M. Balaban

Most-cited papers

1. Greengenes2 unifies microbial data in a single reference tree

   D. McDonald, Yueyu Jiang, M. Balaban, Kalen Cantrell +21 more

   2023Nature Biotechnology666 citations Open access

   Semantic Scholar

   Save

2. Complexity of avian evolution revealed by family-level genomes

   Josefin Stiller, Shaohong Feng, Al-Aabid Chowdhury, Iker Rivas-González +48 more

   2024Nature250 citations Open access

   Semantic Scholar

   Save

3. Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles

   J. Morton, Dong-Xue Jin, R. Mills, Y. Shao +39 more

   2023Nature Neuroscience215 citations Open access

   Semantic Scholar

   Save

4. TreeCluster: Clustering biological sequences using phylogenetic trees

   M. Balaban, Niema Moshiri, U. Mai, Xingfan Jia +1 more

   2019bioRxiv177 citations Open access

   Semantic Scholar

   Save

5. CloudSVM: Training an SVM Classifier in Cloud Computing Systems

   Ferhat Ozgur Catak, M. Balaban

   2012ICPCA/SWS48 citations

   Semantic Scholar

   Save

6. APPLES: Scalable Distance-based Phylogenetic Placement with or without Alignments.

   M. Balaban, Shahab Sarmashghi, S. Mirarab

   2019Systematic Biology44 citations Open access

   Semantic Scholar

   Save

7. DEPP: Deep Learning Enables Extending Species Trees using Single Genes

   Yueyu Jiang, M. Balaban, Qi-Yun Zhu, S. Mirarab

   2021bioRxiv39 citations Open access

   Semantic Scholar

   Save

8. Greengenes2 enables a shared data universe for microbiome studies

   D. McDonald, Yueyu Jiang, M. Balaban, Kalen Cantrell +21 more

   2023bioRxiv37 citations Open access

   Semantic Scholar

   Save

9. Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT

   Shahab Sarmashghi, M. Balaban, Eleonora Rachtman, B. Touri +2 more

   2021bioRxiv36 citations Open access

   Semantic Scholar

   Save

10. A MapReduce based distributed SVM algorithm for binary classification

    Ferhat Ozgur Catak, M. Balaban

    2013arXiv.org27 citations Open access

    Semantic Scholar

    Save

11. Fast and Accurate Distance-based Phylogenetic Placement using Divide and Conquer

    M. Balaban, Yueyu Jiang, Daniel Roush, Qi-Yun Zhu +1 more

    2021bioRxiv25 citations Open access

    Semantic Scholar

    Save

12. Generation of accurate, expandable phylogenomic trees with uDANCE

    M. Balaban, Yueyu Jiang, Qi-Yun Zhu, D. McDonald +2 more

    2023Nature Biotechnology23 citations Open access

    Semantic Scholar

    Save

13. On the impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters

    Eleonora Rachtman, M. Balaban, V. Bafna, S. Mirarab

    2019bioRxiv23 citations Open access

    Semantic Scholar

    Save

14. Software for Systematics and Evolution APPLES: Scalable Distance-Based Phylogenetic Placement with or without Alignments

    M. Balaban, Shahab Sarmashghi, S. Mirarab

    202022 citations

    Semantic Scholar

    Save

15. Author Correction: Greengenes2 unifies microbial data in a single reference tree

    D. McDonald, Yueyu Jiang, M. Balaban, Kalen Cantrell +21 more

    2023Nature Biotechnology19 citations Open access

    Semantic Scholar

    Save

16. APPLES: Fast Distance-based Phylogenetic Placement

    M. Balaban, Shahab Sarmashghi, S. Mirarab

    2018bioRxiv11 citations Open access

    Semantic Scholar

    Save

17. Phylogenetic double placement of mixed samples

    M. Balaban, S. Mirarab

    2020Bioinform.9 citations Open access

    Semantic Scholar

    Save

18. Simulated Annealing Algorithm for Graph Coloring

    Alper Köse, B. Sonmez, M. Balaban

    2017arXiv.org7 citations

    Semantic Scholar

    Save

19. Genome-wide alignment-free phylogenetic distance estimation under a no strand-bias model

    M. Balaban, N. Bristy, Ahnaf Faisal, M. Bayzid +1 more

    2021bioRxiv4 citations Open access

    Semantic Scholar

    Save

20. The gene family-free median of three

    D. Doerr, M. Balaban, P. Feijão, C. Chauve

    2016Algorithms for Molecular Biology3 citations Open access

    Semantic Scholar

    Save

21. Distance-Based Phylogenetic Placement with Statistical Support

    Navid Bin Hasan, M. Balaban, Avijit Biswas, M. Bayzid +1 more

    2022Biology2 citations Open access

    Semantic Scholar

    Save

22. Author Correction: Generation of accurate, expandable phylogenomic trees with uDance

    M. Balaban, Yueyu Jiang, Qi-Yun Zhu, D. McDonald +2 more

    2023Nature Biotechnology1 citations Open access

    Semantic Scholar

    Save

23. Fast and Accurate Branch Support Calculation for Distance-Based Phylogenetic Placements

    Navid Bin Hasan, Avijit Biswas, M. Balaban, S. Mirarab +1 more

    2022RECOMB Comparative Genomics Satellite Conference1 citations

    Semantic Scholar

    Save

24. Distance-aware Algorithms for Scalable Evolutionary and Ecological Analyses

    M. Balaban

    20220 citations

    Semantic Scholar

    Save

25. Real-time Traffic Estimation on Highways Using Cellular Data

    M. Balaban

    20180 citations

    Semantic Scholar

    Save

26. Supporting Information for The gene family-free median of three

    D. Doerr, P. Feijão, M. Balaban, C. Chauve

    20160 citations

    Semantic Scholar

    Save