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J. Dudley · SciRah

Researcher profile · Semantic Scholar

J. Dudley

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J. Dudley — researcher profile on SciRah

h-index: 70
Works: 314
Citations: 59K

Most-cited papers

Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review
Seyedmostafa Sheikhalishahi, R. Miotto, J. Dudley, A. Lavelli +2 more
2019JMIR Medical Informatics491 citations Open access
Semantic Scholar
Deep learning predicts hip fracture using confounding patient and healthcare variables
Marcus A. Badgeley, J. Zech, L. Oakden-Rayner, B. Glicksberg +6 more
2018npj Digital Medicine301 citations Open access
Semantic Scholar
Deep representation learning of electronic health records to unlock patient stratification at scale
I. Landi, B. Glicksberg, Hao-Chih Lee, S. Cherng +5 more
2020npj Digital Medicine222 citations Open access
Semantic Scholar
Proposed Requirements for Cardiovascular Imaging-Related Machine Learning Evaluation (PRIME): A Checklist
P. Sengupta, S. Shrestha, B. Berthon, E. Messas +20 more
2020JACC Cardiovascular Imaging210 citations Open access
Semantic Scholar
Early life stress alters transcriptomic patterning across reward circuitry in male and female mice
C. Peña, Milo R. Smith, A. Ramakrishnan, Hannah M. Cates +9 more
2019Nature Communications206 citations Open access
Semantic Scholar
Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2
C. Vogels, M. Breban, I. Ott, Tara Alpert +35 more
2021PLoS Biology204 citations Open access
Semantic Scholar
Early introductions and transmission of SARS-CoV-2 variant B.1.1.7 in the United States
Tara Alpert, A. Brito, E. Lasek-Nesselquist, Jessica E. Rothman +46 more
2021Cell121 citations Open access
Semantic Scholar
Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits
Wen Zhang, G. Voloudakis, V. Rajagopal, B. Readhead +7 more
2019Nature Communications108 citations Open access
Semantic Scholar
Alterations in innate immunity and epithelial cell differentiation are the molecular pillars of hidradenitis suppurativa
C. Zouboulis, A. Nogueira da Costa, E. Makrantonaki, X.X. Hou +11 more
2019Journal of the European Academy of Dermatology and Venereology96 citations Open access
Semantic Scholar
Saracatinib, a Selective Src Kinase Inhibitor, Blocks Fibrotic Responses in Preclinical Models of Pulmonary Fibrosis.
F. Ahangari, Christine Becker, D. Foster, M. Chioccioli +30 more
2022American Journal of Respiratory and Critical Care Medicine86 citations
Semantic Scholar
Mutation-Derived Neoantigen Specific T cell Responses in Multiple Myeloma
Deepak Perumal, Naoko Imai, A. Laganà, J. Finnigan +13 more
2019Clinical Cancer Research79 citations Open access
Semantic Scholar
The next generation of precision medicine: observational studies, electronic health records, biobanks and continuous monitoring.
Benjamin S. Glicksberg, Kipp W. Johnson, J. Dudley
2018Human Molecular Genetics72 citations
Semantic Scholar
Association of Hemoglobin A1c Levels With Use of Sulfonylureas, Dipeptidyl Peptidase 4 Inhibitors, and Thiazolidinediones in Patients With Type 2 Diabetes Treated With Metformin
R. Vashisht, Kenneth Jung, Alejandro Schuler, J. Banda +19 more
2018JAMA Network Open65 citations Open access
Semantic Scholar
Patient similarity network of newly diagnosed multiple myeloma identifies patient subgroups with distinct genetic features and clinical implications
Sherry Bhalla, D. Melnekoff, Adolfo Aleman, V. Leshchenko +13 more
2020Science Advances63 citations Open access
Semantic Scholar
Scaling structural learning with NO-BEARS to infer causal transcriptome networks
Hao-Chih Lee, Matteo Danieletto, R. Miotto, S. Cherng +1 more
2019Pacific Symposium on Biocomputing63 citations Open access
Semantic Scholar
MEWS++: Enhancing the Prediction of Clinical Deterioration in Admitted Patients through a Machine Learning Model
A. Kia, P. Timsina, Himanshu Joshi, E. Klang +8 more
2020Journal of Clinical Medicine62 citations Open access
Semantic Scholar
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses
Andrew Liu, K. Patel, Ramya Vunikili, Kipp W. Johnson +11 more
2019Briefings Bioinform.58 citations Open access
Semantic Scholar
Integrative network analysis identifies novel drivers of pathogenesis and progression in newly diagnosed multiple myeloma
A. Laganà, Deepak Perumal, D. Melnekoff, B. Readhead +14 more
2018Leukemia58 citations
Semantic Scholar
Predicting future cardiovascular events in patients with peripheral artery disease using electronic health record data
E. Ross, Kenneth Jung, J. Dudley, Li Li +2 more
2019Circulation. Cardiovascular Quality and Outcomes54 citations Open access
Semantic Scholar
Longitudinal Autonomic Nervous System Measures Correlate With Stress and Ulcerative Colitis Disease Activity and Predict Flare.
R. Hirten, Matteo Danieletto, R. Scheel, Mark M. Shervey +9 more
2020Inflammatory Bowel Diseases51 citations
Semantic Scholar
MetaCyto: A tool for automated meta-analysis of mass and flow cytometry data
Zi-Cheng Hu, Chethan Jujjavarapu, Jacob J. Hughey, Sandra Andorf +12 more
2018Cell Reports51 citations Open access
Semantic Scholar
PatientExploreR: an extensible application for dynamic visualization of patient clinical history from electronic health records in the OMOP common data model
B. Glicksberg, B. Oskotsky, P. Thangaraj, Nicholas P. Giangreco +18 more
2019Bioinform.43 citations Open access
Semantic Scholar
Validation of a Transcriptome-Based Assay for Classifying Cancers of Unknown Primary Origin
J. Michuda, A. Breschi, J. Kapilivsky, K. Manghnani +14 more
2022Molecular Diagnosis & Therapy42 citations Open access
Semantic Scholar
Phe2vec: Automated disease phenotyping based on unsupervised embeddings from electronic health records
J. D. De Freitas, Kipp W. Johnson, Eddye Golden, Girish N. Nadkarni +4 more
2020medRxiv42 citations Open access
Semantic Scholar
miR155 regulation of behavior, neuropathology, and cortical transcriptomics in Alzheimer’s disease
B. Readhead, Jean-Vianney Haure-Mirande, D. Mastroeni, M. Audrain +6 more
2020Acta Neuropathologica40 citations Open access
Semantic Scholar
PI3K inhibitors protect against glucocorticoid-induced skin atrophy
S. Agarwal, S. Mirzoeva, B. Readhead, J. Dudley +1 more
2019EBioMedicine40 citations Open access
Semantic Scholar
MicroRNA‐195 controls MICU1 expression and tumor growth in ovarian cancer
Geeta Rao, S. Dwivedi, Yushan Zhang, A. Dey +9 more
2020EMBO Reports38 citations Open access
Semantic Scholar
Privacy-Preserving Methods for Feature Engineering Using Blockchain: Review, Evaluation, and Proof of Concept
Michael Jones, Matthew Johnson, Mark M. Shervey, J. Dudley +1 more
2019Journal of Medical Internet Research34 citations Open access
Semantic Scholar
Deep learning-based brain transcriptomic signatures associated with the neuropathological and clinical severity of Alzheimer’s disease
Qi Wang, Ke-Wei Chen, Yi Su, E. Reiman +2 more
2021bioRxiv32 citations Open access
Semantic Scholar
Building a Secure Biomedical Data Sharing Decentralized App (DApp): Tutorial
Matthew Johnson, Michael Jones, Mark M. Shervey, J. Dudley +1 more
2019Journal of Medical Internet Research31 citations Open access
Semantic Scholar
Leveraging Big Data to Transform Drug Discovery
B. Glicksberg, Li Li, Rong-Bing Chen, J. Dudley +1 more
2019Methods in molecular biology29 citations Open access
Semantic Scholar
Identifying Acute Low Back Pain Episodes in Primary Care Practice From Clinical Notes: Observational Study
R. Miotto, B. Percha, B. Glicksberg, Hao-Chih Lee +3 more
2020JMIR Medical Informatics26 citations Open access
Semantic Scholar
Designing Robust N-of-1 Studies for Precision Medicine: Simulation Study and Design Recommendations
B. Percha, E. Baskerville, Matthew Johnson, J. Dudley +1 more
2019Journal of Medical Internet Research26 citations Open access
Semantic Scholar
Deletion of the glucocorticoid receptor chaperone FKBP51 prevents glucocorticoid-induced skin atrophy
G. Baida, P. Bhalla, A. Yemelyanov, L. A. Stechschulte +5 more
2018OncoTarget26 citations Open access
Semantic Scholar
Peer Review #2 of "Identification of potential biomarkers and pivotal biological pathways for prostate cancer using bioinformatics analysis methods (v0.2)"
Zi-Hao He, Xiao-Lu Duan, Guo-Hua Zeng, Along Gou +404 more
201924 citations Open access
Semantic Scholar
Early introductions and community transmission of SARS-CoV-2 variant B.1.1.7 in the United States
Tara Alpert, A. Brito, E. Lasek-Nesselquist, Jessica E. Rothman +46 more
2021medRxiv23 citations Open access
Semantic Scholar
Transcriptomic network interactions in the human skin treated with topical glucocorticoid clobetasol propionate
L. Lili, A. Klopot, B. Readhead, G. Baida +2 more
2019Journal of Investigative Dermatology23 citations Open access
Semantic Scholar
Sleep in the Natural Environment: A Pilot Study
Fayzan F. Chaudhry, Matteo Danieletto, Eddye Golden, Jerome Scelza +12 more
2020Italian National Conference on Sensors21 citations Open access
Semantic Scholar
Improved gastrointestinal health for irritable bowel syndrome with metagenome-guided interventions
Cem Meydan, Ebrahim Afshinnekoo, Nate Rickard, G. Daniels +8 more
2020Precision Clinical Medicine20 citations Open access
Semantic Scholar
Longitudinal data in peripheral blood confirm that PM20D1 is a quantitative trait locus (QTL) for Alzheimer’s disease and implicate its dynamic role in disease progression
Qi Wang, Ying-Hua Chen, B. Readhead, Ke-Wei Chen +3 more
2020Clinical Epigenetics19 citations Open access
Semantic Scholar
The whole is greater than the sum of its parts: combining classical statistical and machine intelligence methods in medicine
K. Shameer, Kipp W. Johnson, B. Glicksberg, J. Dudley +1 more
2018Heart19 citations
Semantic Scholar
Repositioning of a novel GABA-B receptor agonist, AZD3355 (Lesogaberan), for the treatment of non-alcoholic steatohepatitis
Dipankar Bhattacharya, Christine Becker, B. Readhead, N. Goossens +8 more
2021Scientific Reports18 citations Open access
Semantic Scholar
Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining
K. Shameer, M. Perez-Rodriguez, Roy Bachar, Li Li +14 more
2018BMC Medical Informatics and Decision Making18 citations Open access
Semantic Scholar
Genome-wide analysis indicates association between heterozygote advantage and healthy aging in humans
Ke Xu, R. Kosoy, K. Shameer, Sudhir Kumar +6 more
2019BMC Genetics17 citations Open access
Semantic Scholar
Predictive Modelling of Susceptibility to Substance Abuse, Mortality and Drug-Drug Interactions in Opioid Patients
Ramya Vunikili, B. Glicksberg, Kipp W. Johnson, J. Dudley +2 more
2021Frontiers in Artificial Intelligence16 citations Open access
Semantic Scholar
Longitudinal data in peripheral blood confirm that PM20D1 is a quantitative trait locus (QTL) for Alzheimer’s disease and implicate its dynamic role in disease progression
Qi Wang, Ying-Hua Chen, B. Readhead, Ke-Wei Chen +3 more
2020Clinical Epigenetics15 citations Open access
Semantic Scholar
Automated phenotyping of patients with non-alcoholic fatty liver disease reveals clinically relevant disease subtypes
M. Vandromme, T. Jun, P. Perumalswami, J. Dudley +2 more
2019Pacific Symposium on Biocomputing15 citations Open access
Semantic Scholar
Systems Pharmacology Identifies an Arterial Wall Regulatory Gene Network Mediating Coronary Artery Disease Side Effects of Antiretroviral Therapy
Itziar Frades, B. Readhead, Letizia Amadori, Simon Koplev +8 more
2019Circulation Genomic and Precision Medicine13 citations Open access
Semantic Scholar
Clarifying the Potential Role of Microbes in Alzheimer’s Disease
B. Readhead, Jean-Vianney Haure-Mirande, M. Ehrlich, S. Gandy +1 more
2019Neuron13 citations Open access
Semantic Scholar
A transcriptomic model to predict increase in fibrous cap thickness in response to high-dose statin treatment: Validation by serial intracoronary OCT imaging
Kipp W. Johnson, B. Glicksberg, K. Shameer, Y. Vengrenyuk +6 more
2019EBioMedicine13 citations Open access
Semantic Scholar

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