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K. Heidelberg · SciRah

Researcher profile · Semantic Scholar

K. Heidelberg

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K. Heidelberg — researcher profile on SciRah

h-index: 32
Works: 54
Citations: 4,347

Most-cited papers

The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families
S. Yooseph, G. Sutton, D. Rusch, A. Halpern +29 more
2007PLoS Biology865 citations Open access
Semantic Scholar
The Sorcerer II Global Ocean Sampling Expedition: Metagenomic Characterization of Viruses within Aquatic Microbial Samples
S. Williamson, D. Rusch, S. Yooseph, A. Halpern +8 more
2008PLoS ONE400 citations Open access
Semantic Scholar
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
P. Narasingarao, S. Podell, Juan A. Ugalde, C. Brochier-Armanet +5 more
2011The ISME Journal369 citations Open access
Semantic Scholar
Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis
T. Thomas, D. Rusch, M. DeMaere, P. Yung +6 more
2010The ISME Journal304 citations
Semantic Scholar
Bacteria of the γ-Subclass Proteobacteria Associated with Zooplankton in Chesapeake Bay
J. Heidelberg, K. Heidelberg, R. Colwell
2002Applied and Environmental Microbiology200 citations Open access
Semantic Scholar
Protists are microbes too: a perspective
D. Caron, A. Worden, P. Countway, E. Demir +1 more
2009The ISME Journal198 citations
Semantic Scholar
Probing the evolution, ecology and physiology of marine protists using transcriptomics
D. Caron, H. Alexander, A. Allen, J. Archibald +11 more
2016Nature Reviews Microbiology189 citations
Semantic Scholar
Seasonality of Chesapeake Bay Bacterioplankton Species
J. Heidelberg, K. Heidelberg, R. Colwell
2002Applied and Environmental Microbiology169 citations Open access
Semantic Scholar
Composition and sources of near reef zooplankton on a Jamaican forereef along with implications for coral feeding
K. Heidelberg, K. Sebens, J. Purcell
2004Coral reefs115 citations
Semantic Scholar
Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly
J. Emerson, B. Thomas, Karen Andrade, E. Allen +2 more
2012Applied and Environmental Microbiology101 citations Open access
Semantic Scholar
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community
S. Podell, J. Emerson, C. Jones, Juan A. Ugalde +4 more
2013The ISME Journal98 citations Open access
Semantic Scholar
Assembly-Driven Community Genomics of a Hypersaline Microbial Ecosystem
S. Podell, Juan A. Ugalde, P. Narasingarao, J. Banfield +2 more
2013PLoS ONE97 citations Open access
Semantic Scholar
Bacteria of the gamma-subclass Proteobacteria associated with zooplankton in Chesapeake Bay.
J. Heidelberg, K. Heidelberg, R. Colwell
2002Applied and Environmental Microbiology88 citations
Semantic Scholar
Virus-Host and CRISPR Dynamics in Archaea-Dominated Hypersaline Lake Tyrrell, Victoria, Australia
J. Emerson, Karen Andrade, B. Thomas, A. Norman +3 more
2013Archaea85 citations Open access
Semantic Scholar
Swimming and feeding by the scyphomedusa Chrysaora quinquecirrha
M. Ford, J. Costello, K. Heidelberg, J. Purcell
199777 citations
Semantic Scholar
A tale of two mixotrophic chrysophytes: Insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression
Alle A. Y. Lie, Zhen-Feng Liu, R. Terrado, A. Tatters +2 more
2018PLoS ONE65 citations Open access
Semantic Scholar
Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia
K. Heidelberg, W. Nelson, J. Holm, Nadine Eisenkolb +2 more
2013Frontiers in Microbiology65 citations Open access
Semantic Scholar
Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation
Zhen-Feng Liu, Amy E. Koid, R. Terrado, Victoria Campbell +2 more
2015Frontiers in Microbiology62 citations Open access
Semantic Scholar
Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte established through stable isotope analysis
R. Terrado, A. Pasulka, Alle A. Y. Lie, V. Orphan +2 more
2017The ISME Journal57 citations Open access
Semantic Scholar
Marine genomics: at the interface of marine microbial ecology and biodiscovery
K. Heidelberg, J. Gilbert, I. Joint
2010Microbial Biotechnology56 citations Open access
Semantic Scholar
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
D. Rusch, A. Halpern, G. Sutton, K. Heidelberg +36 more
2007PLoS Biology52 citations Open access
Semantic Scholar
Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico
N. E. López-Lozano, K. Heidelberg, W. Nelson, F. García-Oliva +2 more
2013PeerJ47 citations Open access
Semantic Scholar
Gene expression characterizes different nutritional strategies among three mixotrophic protists.
Zhen-Feng Liu, Victoria Campbell, K. Heidelberg, D. Caron
2016FEMS Microbiology Ecology46 citations Open access
Semantic Scholar
Microbiomes of Muricea californica and M. fruticosa: Comparative Analyses of Two Co-occurring Eastern Pacific Octocorals
J. Holm, K. Heidelberg
2016Frontiers in Microbiology45 citations Open access
Semantic Scholar
New Approaches Indicate Constant Viral Diversity despite Shifts in Assemblage Structure in an Australian Hypersaline Lake
J. Emerson, B. Thomas, Karen Andrade, K. Heidelberg +1 more
2013Applied and Environmental Microbiology45 citations Open access
Semantic Scholar
Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem
Karen Andrade, J. Logemann, K. Heidelberg, J. Emerson +10 more
2015The ISME Journal44 citations Open access
Semantic Scholar
Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA)
K. Heidelberg, Keri L. O’Neil, J. Bythell, K. Sebens
2010Journal of Plankton Research44 citations Open access
Semantic Scholar
Comparative Analysis of Eukaryotic Marine Microbial Assemblages from 18S rRNA Gene and Gene Transcript Clone Libraries by Using Different Methods of Extraction
Amy E. Koid, W. Nelson, A. Mraz, K. Heidelberg
2012Applied and Environmental Microbiology40 citations Open access
Semantic Scholar
Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp.
Alle A. Y. Lie, Zhen-Feng Liu, R. Terrado, A. Tatters +2 more
2017BMC Genomics38 citations Open access
Semantic Scholar
Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability
Zhen-Feng Liu, A. Jones, Victoria Campbell, K. Hambright +2 more
2015Frontiers in Microbiology36 citations Open access
Semantic Scholar
Single-cell transcriptomics of small microbial eukaryotes: limitations and potential
Zhen-Feng Liu, Sarah K. Hu, Victoria Campbell, A. Tatters +2 more
2017The ISME Journal34 citations Open access
Semantic Scholar
Comparative Transcriptome Analysis of Four Prymnesiophyte Algae
Amy E. Koid, Zhen-Feng Liu, R. Terrado, A. Jones +2 more
2014PLoS ONE32 citations Open access
Semantic Scholar
Single-Cell View of Carbon and Nitrogen Acquisition in the Mixotrophic Alga Prymnesium parvum (Haptophyta) Inferred From Stable Isotope Tracers and NanoSIMS
K. Carpenter, M. Bose, L. Polerecky, Alle A. Y. Lie +2 more
2018Frontiers in Marine Science27 citations Open access
Semantic Scholar
Shifting metabolic priorities among key protistan taxa within and below the euphotic zone
Sarah K. Hu, Zhen-Feng Liu, H. Alexander, Victoria Campbell +4 more
2018Environmental Microbiology27 citations
Semantic Scholar
SSU‐rRNA Gene Sequencing Survey of Benthic Microbial Eukaryotes from Guaymas Basin Hydrothermal Vent
A. Pasulka, Sarah K. Hu, P. Countway, K. Coyne +3 more
2019Journal of Eukaryotic Microbiology26 citations
Semantic Scholar
Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data
B. Tully, Rohan Sachdeva, K. Heidelberg, J. Heidelberg
2014Microbiome19 citations Open access
Semantic Scholar
Peer Review #2 of "A total of 219 metagenome-assembled genomes of microorganisms from Icelandic marine waters (v0.1)"
Clara Jégousse, P. Vannier, R. Groben, F. Glöckner +456 more
202115 citations Open access
Semantic Scholar
Nitrogen cycling in coastal sediment microbial communities with seasonally variable benthic nutrient fluxes
Alexis J Marshall, A. Longmore, Lori Phillips, Caixian Tang +3 more
202015 citations Open access
Semantic Scholar
De Novo Sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, Reveal a Variable Genomic Landscape
B. Tully, J. Emerson, Karen Andrade, J. Brocks +3 more
2015Archaea13 citations Open access
Semantic Scholar
Using metatranscriptomics to better understand the role of microbial nitrogen cycling in coastal sediment benthic flux denitrification efficiency
Alexis J Marshall, Lori Phillips, A. Longmore, H. Hayden +3 more
2023Environmental Microbiology Reports12 citations Open access
Semantic Scholar
Taking metagenomic studies in context.
K. Remington, K. Heidelberg, J. C. Venter
2005Trends in Microbiology9 citations
Semantic Scholar
Primer selection influences abundance estimates of ammonia oxidizing archaea in coastal marine sediments.
Alexis J Marshall, L. Phillips, A. Longmore, Cai-Xian Tang +2 more
2018Marine Environmental Research8 citations
Semantic Scholar
Temporal profiling resolves the drivers of microbial nitrogen cycling variability in coastal sediments.
Alexis J Marshall, L. Phillips, A. Longmore, H. Hayden +3 more
2022Science of the Total Environment7 citations Open access
Semantic Scholar
Microbial Eukaryote Diversity and Biogeography Recent insights into protistan ecology are fueling a debate over their diversity, distribution, and also the species concept
D. Caron, R. Gast, P. Countway, K. Heidelberg
20095 citations
Semantic Scholar
How does surface soil geomorphology and land-use influence the soil microbial ecosystems in south eastern Australia? Insights gained from DNA sequencing of the soil metagenome.
P. Mele, T. Sawbridge, H. Hayden, B. Methé +8 more
20102 citations
Semantic Scholar
Marine Environmental Genomics: New Secrets from a Mysterious Ocean
K. Heidelberg, J. Heidelberg
20052 citations Open access
Semantic Scholar
Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp.
Alle A. Y. Lie, Zhen-Feng Liu, R. Terrado, A. Tatters +2 more
2017BMC Genomics1 citations Open access
Semantic Scholar
Structure in an Australian Hypersaline Lake Diversity despite Shifts in Assemblage New Approaches Indicate Constant Viral
K. Heidelberg, J. Banfield, J. Emerson, B. Thomas +1 more
20141 citations
Semantic Scholar
in a
Karen Andrade, J. Logemann, K. Heidelberg, J. Emerson +12 more
20190 citations
Semantic Scholar
Microbial eukaryotes from the deep: revealing the diversity of protists and their trophic relationships at hydrothermal vents
P. Countway, A. Pasulka, L. Mesrop, Sarah K. Hu +4 more
20160 citations
Semantic Scholar

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Zhen-Feng Liu×9
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Karen Andrade — researcher profile on SciRah

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E. Allen — researcher profile on SciRah

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D. Rusch — researcher profile on SciRah

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A. Halpern — researcher profile on SciRah

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Alle A. Y. Lie — researcher profile on SciRah