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M. Baddoo · SciRah

Researcher profile · Semantic Scholar

M. Baddoo

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M. Baddoo — researcher profile on SciRah

h-index: 30
Works: 109
Citations: 4,632

Most-cited papers

Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples
Michael J. Strong, Guo-Rong Xu, L. Morici, Sandra Splinter BonDurant +5 more
2014PLoS Pathogens164 citations Open access
Semantic Scholar
Differences in Gastric Carcinoma Microenvironment Stratify According to EBV Infection Intensity: Implications for Possible Immune Adjuvant Therapy
Michael J. Strong, Guo-Rong Xu, Joseph R. Coco, Carl Baribault +14 more
2013PLoS Pathogens155 citations Open access
Semantic Scholar
The Epstein Barr virus circRNAome
Nathan A. Ungerleider, Monica Concha, Zhen Lin, Claire Roberts +11 more
2018PLoS Pathogens130 citations Open access
Semantic Scholar
Whole-Genome Sequencing of the Akata and Mutu Epstein-Barr Virus Strains
Zhen Lin, Xia Wang, Michael J. Strong, Monica Concha +8 more
2012Journal of Virology113 citations Open access
Semantic Scholar
Comprehensive High-Throughput RNA Sequencing Analysis Reveals Contamination of Multiple Nasopharyngeal Carcinoma Cell Lines with HeLa Cell Genomes
Michael J. Strong, M. Baddoo, A. Nanbo, Miao Xu +2 more
2014Journal of Virology107 citations Open access
Semantic Scholar
A Positive Role of c-Myc in Regulating Androgen Receptor and its Splice Variants in Prostate Cancer
S. Bai, Su-Bing Cao, Lian-Jin Jin, Margaret M Kobelski +12 more
2019Oncogene97 citations Open access
Semantic Scholar
A comprehensive approach to expression of L1 loci
P. Deininger, M. Morales, T. White, M. Baddoo +8 more
2016Nucleic Acids Research95 citations Open access
Semantic Scholar
Global transcript structure resolution of high gene density genomes through multi-platform data integration
Tina M. O’Grady, Xia Wang, Kerstin Höner zu Bentrup, M. Baddoo +2 more
2016Nucleic Acids Research92 citations Open access
Semantic Scholar
Nerve growth factor receptor negates the tumor suppressor p53 as a feedback regulator
Xiaoping Zhou, Q. Hao, P. Liao, Shi-Wen Luo +9 more
2016eLife69 citations Open access
Semantic Scholar
A comprehensive next generation sequencing-based virome assessment in brain tissue suggests no major virus - tumor association
Michael J. Strong, Eugene E. Blanchard, Zhen Lin, C. Morris +4 more
2016Acta Neuropathologica Communications62 citations Open access
Semantic Scholar
High-Throughput RNA Sequencing-Based Virome Analysis of 50 Lymphoma Cell Lines from the Cancer Cell Line Encyclopedia Project
Su-Bing Cao, Michael J. Strong, Xia Wang, Walter N. Moss +7 more
2014Journal of Virology60 citations Open access
Semantic Scholar
Global Bidirectional Transcription of the Epstein-Barr Virus Genome during Reactivation
Tina M. O’Grady, Su-Bing Cao, Michael J. Strong, Monica Concha +9 more
2013Journal of Virology60 citations Open access
Semantic Scholar
Transcriptome analysis reveals sexual disparities in gene expression in rat brain microvessels
Partha K. Chandra, Sinisa Cikic, M. Baddoo, I. Rutkai +4 more
2021Journal of Cerebral Blood Flow and Metabolism59 citations Open access
Semantic Scholar
New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication, oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription
Su-Bing Cao, Walter N. Moss, Tina M. O’Grady, Monica Concha +9 more
2015Journal of Virology55 citations Open access
Semantic Scholar
SON and its alternatively spliced isoforms control MLL complex-mediated H3K4me3 and transcription of leukemia-associated genes
Jung-Hyun Kim, M. Baddoo, E. Park, Joshua K. Stone +10 more
2016Molecules and Cells49 citations Open access
Semantic Scholar
Somatic mutations in the DNA repairome in prostate cancers in African Americans and Caucasians
Santosh Yadav, M. Anbalagan, M. Baddoo, V. Chellamuthu +6 more
2020Oncogene42 citations Open access
Semantic Scholar
Epstein-Barr Virus and Human Herpesvirus 6 Detection in a Non-Hodgkin's Diffuse Large B-Cell Lymphoma Cohort by Using RNA Sequencing
Michael J. Strong, Tina M. O’Grady, Zhen Lin, Guo-Rong Xu +5 more
2013Journal of Virology39 citations Open access
Semantic Scholar
Circular RNAs add diversity to androgen receptor isoform repertoire in castration-resistant prostate cancer
Su-Bing Cao, Tianfang Ma, Nathan A. Ungerleider, Claire Roberts +17 more
2019Oncogene38 citations Open access
Semantic Scholar
TAF4b Regulates Oocyte-Specific Genes Essential for Meiosis
Kathryn J. Grive, Eric Gustafson, K. Seymour, M. Baddoo +5 more
2016PLoS Genetics37 citations Open access
Semantic Scholar
Reduced mitochondrial activity in colonocytes facilitates AMPKα2‐dependent inflammation
S. Heller, Harrison M. Penrose, Chloe Cable, Debjani Biswas +5 more
2017The FASEB Journal36 citations Open access
Semantic Scholar
Ancestry as a potential modifier of gene expression in breast tumors from Colombian women
S. Serrano-Gomez, M. Sanabria-Salas, J. Garay, M. Baddoo +6 more
2017PLoS ONE34 citations Open access
Semantic Scholar
High-fat diet induced leptin and Wnt expression: RNA-sequencing and pathway analysis of mouse colonic tissue and tumors
Harrison M Penrose, S. Heller, Chloe Cable, Hani Nakhoul +4 more
2017Carcinogenesis34 citations Open access
Semantic Scholar
Latent Expression of the Epstein-Barr Virus (EBV)-Encoded Major Histocompatibility Complex Class I TAP Inhibitor, BNLF2a, in EBV-Positive Gastric Carcinomas
Michael J. Strong, Thomas C Laskow, Hani Nakhoul, Eugene E. Blanchard +6 more
2015Journal of Virology34 citations Open access
Semantic Scholar
Loss of Forkhead Box O3 Facilitates Inflammatory Colon Cancer: Transcriptome Profiling of the Immune Landscape and Novel Targets
Harrison M Penrose, Chloe Cable, S. Heller, Nathan A. Ungerleider +8 more
2018Cellular and Molecular Gastroenterology and Hepatology30 citations Open access
Semantic Scholar
Exposure of Mycobacterium marinum to low-shear modeled microgravity: effect on growth, the transcriptome and survival under stress
C. Abshire, K. Prasai, Israel Soto, R. Shi +6 more
2016npj Microgravity30 citations Open access
Semantic Scholar
p53 enables metabolic fitness and self-renewal of nephron progenitor cells
Yuwen Li, Jiao Liu, Wen-Cheng Li, Aaron C. Brown +6 more
2015Development29 citations Open access
Semantic Scholar
Comparative analysis of miRNA profile in human dendritic cells infected with respiratory syncytial virus and human metapneumovirus
M. del Rocío Baños-Lara, J. Zabaleta, J. Garai, M. Baddoo +1 more
2018BMC Research Notes27 citations Open access
Semantic Scholar
Elevated ATGL in colon cancer cells and cancer stem cells promotes metabolic and tumorigenic reprogramming reinforced by obesity
Rida Iftikhar, Harrison M Penrose, Angelle N. King, Joshua S. Samudre +8 more
2021Oncogenesis26 citations Open access
Semantic Scholar
Gene network analysis reveals a novel 22-gene signature of carbon metabolism in hepatocellular carcinoma
Jin-Qiang Zhang, M. Baddoo, Chang Han, Michael J. Strong +5 more
2016OncoTarget26 citations Open access
Semantic Scholar
RNA-sequencing study of peripheral blood monocytes in chronic periodontitis
Yao-Zhong Liu, P. Maney, J. Puri, Yu Zhou +5 more
2016Gene25 citations Open access
Semantic Scholar
The impact of oil spill to lung health – insights from an RNA-seq study of human airway epithelial cells
Yao-Zhong Liu, A. M. Roy-Engel, M. Baddoo, E. Flemington +2 more
2015Gene24 citations Open access
Semantic Scholar
Apremilast in Recalcitrant Cutaneous Dermatomyositis: A Nonrandomized Controlled Trial.
Carole Bitar, Thien-Huong T. Ninh, Katherine O. Brag, S. Foutouhi +8 more
2022JAMA dermatology23 citations
Semantic Scholar
Defining the dynamic chromatin landscape of mouse nephron progenitors
Sylvia A. Hilliard, Ren-Fang Song, Hong-Bing Liu, Chao-Hui Chen +7 more
2019Biology Open23 citations Open access
Semantic Scholar
The placental specific gene, PLAC1, is induced by the Epstein-Barr virus and is expressed in human tumor cells
Xia Wang, M. Baddoo, Qinyan Yin
2014Virology Journal22 citations Open access
Semantic Scholar
In-depth characterization of a new patient-derived xenograft model for metaplastic breast carcinoma to identify viable biologic targets and patterns of matrix evolution within rare tumor types
M. Matossian, T. Chang, M. Wright, H. Burks +29 more
2021Clinical and Translational Oncology20 citations Open access
Semantic Scholar
The endonuclease domain of the LINE-1 ORF2 protein can tolerate multiple mutations
K. J. Kines, M. Sokolowski, Dawn Deharo, Claiborne M. Christian +3 more
2016Mobile DNA20 citations Open access
Semantic Scholar
miR-155 induced transcriptome changes in the MCF-7 breast cancer cell line leads to enhanced mitogen activated protein kinase signaling
E. Martin, Adrienne E. Krebs, H. Burks, S. Elliott +4 more
2014Genes & cancer20 citations Open access
Semantic Scholar
Obesity facilitated colon cancer progression is mediated by increased diacylglycerol o-acyltransferases 1 and 2 (DGAT1/2) levels.
Jenisha Ghimire, M. Collins, Patricia Snarski, Angelle N. King +12 more
2024Gastroenterology19 citations Open access
Semantic Scholar
Organ-, sex- and age-dependent patterns of endogenous L1 mRNA expression at a single locus resolution
Emily Stow, Tiffany Kaul, Dawn Deharo, Madeleine R Dem +10 more
2021Nucleic Acids Research19 citations Open access
Semantic Scholar
Interaction of Epstein-Barr virus genes with human gastric carcinoma transcriptome
Ruiyuan Zhang, Michael J. Strong, M. Baddoo, Zhen Lin +3 more
2017OncoTarget19 citations Open access
Semantic Scholar
Bacterial TLR4 and NOD2 signaling linked to reduced mitochondrial energy function in active inflammatory bowel disease
Emmanuelle M. L. Ruiz, Harrison M Penrose, S. Heller, Hani Nakhoul +4 more
2020Gut microbes18 citations Open access
Semantic Scholar
SpliceTools, a suite of downstream RNA splicing analysis tools to investigate mechanisms and impact of alternative splicing
E. Flemington, Samuel A. Flemington, Tina M. O’Grady, M. Baddoo +3 more
2023Nucleic Acids Research17 citations Open access
Semantic Scholar
Aging is associated with impaired angiogenesis, but normal microvascular network structure, in the rat mesentery.
R. Sweat, David C. Sloas, Scott A Stewart, Malwina Czarny-Ratajczak +8 more
2017American Journal of Physiology. Heart and Circulatory Physiology14 citations Open access
Semantic Scholar
Ebola virus delta peptide is an enterotoxin.
L. Melnik, S. Guha, Jenisha Ghimire, A. Smither +9 more
2022Cell Reports13 citations Open access
Semantic Scholar
Maintenance of AP-2-Dependent Functional Activities of Nef Restricts Pathways of Immune Escape from CD8 T Lymphocyte Responses
Blake Schouest, A. Weiler, S. Janaka, T. A. Myers +9 more
2017Journal of Virology12 citations Open access
Semantic Scholar
In colonic ρ0 (rho0) cells reduced mitochondrial function mediates transcriptomic alterations associated with cancer
Harrison M Penrose, S. Heller, Chloe Cable, Hani Nakhoul +6 more
2017Oncoscience12 citations Open access
Semantic Scholar
SON inhibits megakaryocytic differentiation via repressing RUNX1 and the megakaryocytic gene expression program in acute megakaryoblastic leukemia
Lana Vukadin, Jung-Hyun Kim, E. Park, Joshua K. Stone +9 more
2020Cancer Gene Therapy11 citations Open access
Semantic Scholar
Loss of Feedback Regulation between FAM3B and Androgen Receptor Driving Prostate Cancer Progression.
Tianfang Ma, Lian-Jin Jin, Shanshan Bai, Zhan-Lin Liu +20 more
2023Journal of the National Cancer Institute10 citations
Semantic Scholar
SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution
Emily Stow, M. Baddoo, Alexis J. LaRosa, Dawn LaCoste +2 more
2022Mobile DNA10 citations Open access
Semantic Scholar
RNA Next-Generation Sequencing and a Bioinformatics Pipeline to Identify Expressed LINE-1s at the Locus-Specific Level
Tiffany Kaul, M. Morales, Emily Smither, M. Baddoo +2 more
2019Journal of Visualized Experiments10 citations Open access
Semantic Scholar

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