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James M. Krieger · SciRah

Researcher profile · Semantic Scholar

James M. Krieger

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James M. Krieger — researcher profile on SciRah

h-index: 21
Works: 37
Citations: 1,489

Most-cited papers

Pseudomonas aeruginosa utilizes host polyunsaturated phosphatidylethanolamines to trigger theft-ferroptosis in bronchial epithelium
H. Dar, Y. Tyurina, K. Mikulska-Ruminska, I. Shrivastava +26 more
2018Journal of Clinical Investigation216 citations Open access
Semantic Scholar
ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python
She Zhang, James M. Krieger, Yan Zhang, Cihan Kaya +5 more
2021Bioinform.208 citations Open access
Semantic Scholar
Structure and organization of heteromeric AMPA-type glutamate receptors
B. Herguedas, J. García-Nafría, O. Cais, R. Fernández-Leiro +3 more
2016Science111 citations Open access
Semantic Scholar
Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior
Yan Zhang, P. Doruker, B. Kaynak, She Zhang +3 more
2019Current Opinion in Structural Biology107 citations Open access
Semantic Scholar
Impact of South African 501.V2 Variant on SARS-CoV-2 Spike Infectivity and Neutralization: A Structure-based Computational Assessment
M. H. Cheng, James M. Krieger, B. Kaynak, M. Arditi +1 more
2021bioRxiv77 citations Open access
Semantic Scholar
Cooperative dynamics of intact AMPA and NMDA glutamate receptors – similarities and subfamily-specific differences
Anindita Dutta, James M. Krieger, Jiyoung Lee, J. García-Nafría +2 more
2015Structure72 citations Open access
Semantic Scholar
Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy.
C. O. Sorzano, A. Jiménez, J. Mota, J. Vilas +18 more
2019Acta Crystallographica Section F Structural Biology Communications57 citations Open access
Semantic Scholar
Conformational recognition of an intrinsically disordered protein.
James M. Krieger, Giuliana Fusco, Marc Lewitzky, P. Simister +4 more
2014Biophysical Journal57 citations Open access
Semantic Scholar
Shared Signature Dynamics Tempered by Local Fluctuations Enables Fold Adaptability and Specificity
She Zhang, Hong-Chun Li, James M. Krieger, I. Bahar
2019Molecular biology and evolution50 citations Open access
Semantic Scholar
Allosteric interactions in the parathyroid hormone GPCR–arrestin complex formation
L. Clark, James M. Krieger, A. White, V. Bondarenko +13 more
2020Nature Chemical Biology47 citations Open access
Semantic Scholar
Impact of new variants on SARS-CoV-2 infectivity and neutralization: A molecular assessment of the alterations in the spike-host protein interactions
M. H. Cheng, James M. Krieger, A. Banerjee, Yufei Xiang +4 more
2022iScience37 citations Open access
Semantic Scholar
Supplementary Information for Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor
B. Herguedas, Bianka K. Kohegyi, Jan-Niklas Dohrke, J. Watson +8 more
202236 citations
Semantic Scholar
Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members
K. Mikulska-Ruminska, I. Shrivastava, James M. Krieger, She Zhang +6 more
2019Journal of Chemical Information and Modeling36 citations Open access
Semantic Scholar
A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro
M. H. Cheng, Rebecca A. Porritt, M. N. Rivas, James M. Krieger +6 more
2020bioRxiv35 citations Open access
Semantic Scholar
Receptor heteromeric assembly-how it works and why it matters: the case of ionotropic glutamate receptors.
B. Herguedas, James M. Krieger, I. Greger
2013Progress in Molecular Biology and Translational Science35 citations
Semantic Scholar
Structure, Dynamics, and Allosteric Potential of Ionotropic Glutamate Receptor N-Terminal Domains
James M. Krieger, I. Bahar, I. Greger
2015Biophysical Journal34 citations Open access
Semantic Scholar
Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods
James M. Krieger, P. Doruker, A. Scott, D. Perahia +1 more
2020Current Opinion in Structural Biology31 citations Open access
Semantic Scholar
Pharmmaker: Pharmacophore modeling and hit identification based on druggability simulations
Ji-Young Lee, James M. Krieger, Hong-Chun Li, I. Bahar
2019Protein Science31 citations Open access
Semantic Scholar
Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods
B. Kaynak, James M. Krieger, B. Dudas, Zakaria L. Dahmani +6 more
2022Frontiers in Molecular Biosciences28 citations Open access
Semantic Scholar
The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation
Tiziana Ginex, C. Marco-Marín, Miłosz Wieczór, C. Mata +23 more
2021bioRxiv26 citations Open access
Semantic Scholar
Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials
D. Herreros, R. Lederman, James M. Krieger, A. Jiménez-Moreno +7 more
2021IUCrJ24 citations Open access
Semantic Scholar
Adaptability and Specificity: How do proteins balance opposing needs to achieve function?
B. Wingert, James M. Krieger, Hong-Chun Li, I. Bahar
2020Current Opinion in Structural Biology20 citations Open access
Semantic Scholar
Structural and Dynamic Effects of PTEN C-Terminal Tail Phosphorylation
I. N. Smith, Stetson Thacker, J. Dawson, James M. Krieger +2 more
2021bioRxiv19 citations Open access
Semantic Scholar
Druggability simulations and X-ray crystallography reveal a ligand-binding site in the GluA3 AMPA receptor N-terminal domain
Jiyoung Lee, James M. Krieger, B. Herguedas, J. García-Nafría +4 more
2018Structure18 citations Open access
Semantic Scholar
State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps
Yan Zhang, James M. Krieger, K. Mikulska-Ruminska, B. Kaynak +4 more
2020Progress in Biophysics and Molecular Biology15 citations Open access
Semantic Scholar
Activation and Desensitization of Ionotropic Glutamate Receptors by Selectively Triggering Pre-existing Motions
James M. Krieger, Jiyoung Lee, I. Greger, I. Bahar
2018Neuroscience Letters13 citations Open access
Semantic Scholar
Computational biophysics meets cryo‐EM revolution in the search for the functional dynamics of biomolecular systems
Maurício G. S. Costa, Mert Gur, James M. Krieger, Ivet Bahar
2023WIREs Computational Molecular Science11 citations Open access
Semantic Scholar
Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0
James M. Krieger, C. O. Sorzano, J. Carazo, I. Bahar
2022Acta Crystallographica Section D: Structural Biology11 citations Open access
Semantic Scholar
GPCR kinases generate an APH1A phosphorylation barcode to regulate amyloid-β generation
Nicholas K. Todd, Yunhong Huang, Ji-Young Lee, P. Doruker +5 more
2022Cell Reports9 citations Open access
Semantic Scholar
Impact of New Variants on SAR-CoV-2 Infectivity and Neutralization: A Molecular Assessment of the Alterations in the Spike-Host Protein Interactions
M. H. Cheng, James M. Krieger, Yufei Xiang, B. Kaynak +3 more
2021Social Science Research Network8 citations Open access
Semantic Scholar
Scipion-EM-ProDy: A Graphical Interface for the ProDy Python Package within the Scipion Workflow Engine Enabling Integration of Databases, Simulations and Cryo-Electron Microscopy Image Processing
James M. Krieger, C. O. Sorzano, J. Carazo
2023International Journal of Molecular Sciences5 citations Open access
Semantic Scholar
Correction: The structural role of SARS-CoV-2 genetic background in the emergence and success of spike mutations: The case of the spike A222V mutation
Tiziana Ginex, C. Marco-Marín, Miłosz Wieczór, C. Mata +23 more
2022PLoS Pathogens4 citations Open access
Semantic Scholar
Continuous heterogeneity analysis of CryoEM images through Zernike polynomials and spherical harmonics
David Herreros Calero, Roy R. Lederman, James M. Krieger, D. Myška +5 more
2021Microscopy and Microanalysis2 citations
Semantic Scholar
Prody's latest advancements: Gaining insights into protein-protein and protein-water interactions, and their role in protein dynamics
K. Mikulska-Ruminska, Frane Doljanin, James M. Krieger, Xin Cao +5 more
2024Biophysical Journal0 citations Open access
Semantic Scholar
Dynamics of AMPA Receptors from Simulations and Electron Microscopy
James M. Krieger, B. Herguedas, Bishal Singh, Jiyoung Lee +3 more
2019Biophysical Journal0 citations Open access
Semantic Scholar
A Ligand-Binding Site in the Glua3 AMPA Receptor N-Terminal Domain Observed in Druggability Simulations and X-Ray Crystallography
Jiyoung Lee, James M. Krieger, B. Herguedas, J. García-Nafría +4 more
2019Biophysical Journal0 citations Open access
Semantic Scholar
Global Dynamics of Intact AMPA and NMDA Receptors using Elastic Network Models
Jiyoung Lee, Anindita Dutta, James M. Krieger, J. García-Nafría +2 more
20160 citations Open access
Semantic Scholar

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