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V. Khadka · SciRah

Researcher profile · Semantic Scholar

V. Khadka

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V. Khadka — researcher profile on SciRah

h-index: 20
Works: 90
Citations: 1,138

Most-cited papers

Collagen type IV alpha 1 (COL4A1) and collagen type XIII alpha 1 (COL13A1) produced in cancer cells promote tumor budding at the invasion front in human urothelial carcinoma of the bladder
M. Miyake, S. Hori, Y. Morizawa, Y. Tatsumi +17 more
2017OncoTarget101 citations Open access
Semantic Scholar
RNA sequencing-based analysis of the laying hen uterus revealed the novel genes and biological pathways involved in the eggshell biomineralization
Nirvay Sah, D. Kuehu, V. Khadka, You-Ping Deng +3 more
2018Scientific Reports67 citations Open access
Semantic Scholar
Plasma MicroRNA Pair Panels as Novel Biomarkers for Detection of Early Stage Breast Cancer
Rui Fang, Yong Zhu, Ling Hu, V. Khadka +6 more
2019Frontiers in Physiology59 citations Open access
Semantic Scholar
Short day transcriptomic programming during induction of dormancy in grapevine
A. Fennell, K. Schlauch, S. Gouthu, L. Deluc +5 more
2015Frontiers in Plant Science59 citations Open access
Semantic Scholar
The landscape of bacterial presence in tumor and adjacent normal tissue across 9 major cancer types using TCGA exome sequencing
Rebecca M. Rodriguez, B. Hernandez, Mark Menor, You-Ping Deng +1 more
2020Computational and Structural Biotechnology Journal55 citations Open access
Semantic Scholar
Selenoprotein M Promotes Hypothalamic Leptin Signaling and Thioredoxin Antioxidant Activity
Ting Gong, Ann C. Hashimoto, Alexandru R Sasuclark, V. Khadka +2 more
2019Antioxidants and Redox Signaling50 citations Open access
Semantic Scholar
The Evaluation of Serum Biomarkers for Non-small Cell Lung Cancer (NSCLC) Diagnosis
Rui Fang, Yong M. Zhu, V. Khadka, Fan Zhang +2 more
2018Frontiers in Physiology36 citations Open access
Semantic Scholar
Epigenetic Delay in the Neurodevelopmental Trajectory of DNA Methylation States in Autism Spectrum Disorders
M. Corley, Naurú Vargas-Maya, A. Pang, Annette Lum-Jones +5 more
2019Frontiers in Genetics34 citations Open access
Semantic Scholar
Development of a miRNA-seq based prognostic signature in lung adenocarcinoma
Chathura Siriwardhana, V. Khadka, John J. Chen, You-Ping Deng
2019BMC Cancer34 citations Open access
Semantic Scholar
Upregulated ethanolamine phospholipid synthesis via selenoprotein I is required for effective metabolic reprogramming during T cell activation
Chi Ma, Fukun W. Hoffmann, Michael P. Marciel, Kathleen E Page +11 more
2021Molecular Metabolism33 citations Open access
Semantic Scholar
Juvenile Shank3b deficient mice present with behavioral phenotype relevant to autism spectrum disorder
Chantell Balaan, M. Corley, Tiffany Eulalio, Ka'ahukane Leite-ahyo +5 more
2018Behavioural Brain Research31 citations Open access
Semantic Scholar
RNA sequencing-based analysis of the magnum tissues revealed the novel genes and biological pathways involved in the egg-white formation in the laying hen
Nirvay Sah, D. Kuehu, V. Khadka, You-Ping Deng +3 more
2021BMC Genomics30 citations Open access
Semantic Scholar
Selenoprotein K deficiency inhibits melanoma by reducing calcium flux required for tumor growth and metastasis
Michael P. Marciel, V. Khadka, Youpeng Deng, P. Kilicaslan +8 more
2018OncoTarget30 citations Open access
Semantic Scholar
Adherence to Mediterranean diet impacts gastrointestinal microbial diversity throughout pregnancy
Corrie B. Miller, P. Benny, Jonathan M. Riel, C. Boushey +5 more
2021BMC Pregnancy and Childbirth28 citations Open access
Semantic Scholar
Cell-Type Specific Analysis of Selenium-Related Genes in Brain
Alexandru R Sasuclark, V. Khadka, Matthew W. Pitts
2019Antioxidants28 citations Open access
Semantic Scholar
Ratio-Based Method To Identify True Biomarkers by Normalizing Circulating ncRNA Sequencing and Quantitative PCR Data
You-Ping Deng, Yong Zhu, Hongwei Wang, V. Khadka +11 more
2019Analytical Chemistry26 citations Open access
Semantic Scholar
Transcriptomic response is more sensitive to water deficit in shoots than roots of Vitis riparia (Michx.)
V. Khadka, K. Vaughn, Juan Xie, P. Swaminathan +3 more
2019BMC Plant Biology26 citations Open access
Semantic Scholar
Normalization of Soluble CD163 Levels After Institution of Antiretroviral Therapy During Acute HIV Infection Tracks with Fewer Neurological Abnormalities
Michelle L. D'Antoni, M. Byron, P. Chan, N. Sailasuta +53 more
2018Journal of Infectious Diseases26 citations Open access
Semantic Scholar
Dysregulated KRAS gene-signaling axis and abnormal chromatin remodeling drive therapeutic resistance in heterogeneous-sized circulating tumor cells in gastric cancer patients.
Yang Chen, Yan-Yan Li, Chang-Song Qi, Cheng Zhang +14 more
2021Cancer Letters25 citations Open access
Semantic Scholar
RSK1 and RSK2 serine/threonine kinases regulate different transcription programs in cancer
Won Seok Yang, Maisel J. Caliva, V. Khadka, M. Tiirikainen +3 more
2023Frontiers in Cell and Developmental Biology22 citations Open access
Semantic Scholar
Ischemic heart injury leads to HIF1-dependent differential splicing of CaMK2γ
A. L. Williams, Chad B. Walton, Blake Pinell, V. Khadka +5 more
2021Scientific Reports20 citations Open access
Semantic Scholar
Effects of Heat-Induced Oxidative Stress and Astaxanthin on the NF-kB, NFE2L2 and PPARα Transcription Factors and Cytoprotective Capacity in the Thymus of Broilers
D. Kuehu, Yuanyuan Fu, Masaki Nasu, Hua Yang +2 more
2024Current Issues in Molecular Biology19 citations Open access
Semantic Scholar
RNA-Sequencing based analysis of bovine endometrium during the maternal recognition of pregnancy
B. Adhikari, Chin N. Lee, V. Khadka, You-Ping Deng +5 more
2022BMC Genomics19 citations Open access
Semantic Scholar
Identification of lncRNA biomarkers for lung cancer through integrative cross-platform data analyses
Tianying Zhao, V. Khadka, You-Ping Deng
2020Aging18 citations Open access
Semantic Scholar
Circulating microRNA Biomarker for Detecting Breast Cancer in High-Risk Benign Breast Tumors
V. Khadka, Masaki Nasu, You-Ping Deng, M. Jijiwa
2023International Journal of Molecular Sciences17 citations Open access
Semantic Scholar
Comparative DNA methylomic analyses reveal potential origins of novel epigenetic biomarkers of insulin resistance in monocytes from virally suppressed HIV-infected adults
Christian K. Dye, M. Corley, Dongmei Li, V. Khadka +6 more
2019Clinical Epigenetics16 citations Open access
Semantic Scholar
A mutation in the tuft mouse disrupts TET1 activity and alters the expression of genes that are crucial for neural tube closure
K. Fong, R. Hufnagel, V. Khadka, M. Corley +4 more
2016Disease Models & Mechanisms16 citations Open access
Semantic Scholar
T-cell activation decreases miRNA-15a/16 levels to promote MEK1–ERK1/2–Elk1 signaling and proliferative capacity
Frank R. Urena, Chi Ma, Fukun W. Hoffmann, Lance G. A. Nunes +5 more
2022Journal of Biological Chemistry14 citations Open access
Semantic Scholar
Single‐cell RNA sequencing reveals characteristics of myeloid cells in post-acute sequelae of SARS-CoV-2 patients with persistent respiratory symptoms
Hyundong Yoon, Logan S. Dean, Boonyanudh Jiyarom, V. Khadka +7 more
2024Frontiers in Immunology13 citations Open access
Semantic Scholar
Disabled Homolog 2 (DAB2) Protein in Tumor Microenvironment Correlates with Aggressive Phenotype in Human Urothelial Carcinoma of the Bladder
Y. Itami, M. Miyake, S. Ohnishi, Y. Tatsumi +15 more
2020Diagnostics13 citations Open access
Semantic Scholar
Tissue-associated microbial detection in cancer using human sequencing data
Rebecca M. Rodriguez, V. Khadka, Mark Menor, B. Hernandez +1 more
2020BMC Bioinformatics12 citations Open access
Semantic Scholar
Bacterial Diversity Correlates with Overall Survival in Cancers of the Head and Neck, Liver, and Stomach
Rebecca M. Rodriguez, Mark Menor, B. Hernandez, You-Ping Deng +1 more
2021Molecules11 citations Open access
Semantic Scholar
Combined Omics Reveals That Disruption of the Selenocysteine Lyase Gene Affects Amino Acid Pathways in Mice
Lucia A. Seale, V. Khadka, Mark Menor, G. Xie +10 more
2019Nutrients11 citations Open access
Semantic Scholar
Absence of hybridization with the wild-type and mutant rpoB probes in the Genotype MTBDRplus assay detects ‘disputed’ Rifampicin mutations
N. Abanda, Josiane Yvonne Djieugoué, V. Khadka, E. Pefura-Yone +7 more
2017Clinical Microbiology and Infection11 citations Open access
Semantic Scholar
Theoretical study of two-photon absorption properties and up-conversion efficiency of new symmetric organic π-conjugated molecules for photovoltaic devices
Zhong Hu, V. Khadka, Wei Wang, D. Galipeau +1 more
2012Journal of Molecular Modeling11 citations
Semantic Scholar
Use of Microalgae-Derived Astaxanthin to Improve Cytoprotective Capacity in the Ileum of Heat-Induced Oxidative Stressed Broilers
D. Kuehu, Yuanyuan Fu, Masaki Nasu, Hua Yang +2 more
2024Animals10 citations Open access
Semantic Scholar
Exploring Optimal Biomarker Sources: A Comparative Analysis of Exosomes and Whole Plasma in Fasting and Non-Fasting Conditions for Liquid Biopsy Applications
Masaki Nasu, V. Khadka, Mayumi Jijiwa, Ken D. Kobayashi +1 more
2023International Journal of Molecular Sciences10 citations Open access
Semantic Scholar
Multi-antigen Vaccination With Simultaneous Engagement of the OX40 Receptor Delays Malignant Mesothelioma Growth and Increases Survival in Animal Models
P. Hoffmann, Fukun W. Hoffmann, T. Premeaux, T. Fujita +14 more
2019Frontiers in Oncology10 citations Open access
Semantic Scholar
The miRNA Profile of Inflammatory Colorectal Tumors Identify TGF-β as a Companion Target for Checkpoint Blockade Immunotherapy
B. Bartlett, Zitong Gao, Monique Schukking, Mark Menor +4 more
2021Frontiers in Cell and Developmental Biology9 citations Open access
Semantic Scholar
Combination Immunotherapy as a Promising Strategy to Overcome Immunotherapy Resistance: From Emergence to Next‐Generation Approaches
Asmita Pandey, S. Rai, Li Ma, Lauren Higa +3 more
2026Advancement of science7 citations Open access
Semantic Scholar
Effects of Dietary Quality on Vaginal Microbiome Composition Throughout Pregnancy in a Multi-Ethnic Cohort
Corrie B. Miller, Kira Morikawa, P. Benny, J. Riel +4 more
2024Nutrients7 citations Open access
Semantic Scholar
Temporal Investigation of the Maternal Origins of Fetal Gut Microbiota
Corrie B. Miller, Kayti Luu, Brandi S. Mikami, J. Riel +3 more
2024Microorganisms7 citations Open access
Semantic Scholar
Changes in gastrointestinal microbial communities influences HIV-specific CD8 T cell responsiveness to immune checkpoint blockade
I. SahBandar, G. Chew, M. Corley, A. Pang +10 more
2020AIDS (London)7 citations Open access
Semantic Scholar
Loss of PKM2 dysregulates inflammatory signaling in the infarcted murine heart
Ka-Tie C. Y. Lee, A. L. Williams, Akitoshi Hara, V. Khadka +2 more
2025Physiological Reports6 citations
Semantic Scholar
Peripheral immune progression to long COVID is associated with mitochondrial gene transcription: A meta-analysis
David P. Maison, V. Khadka, Isam Mohd-Ibrahim, M. Peluso +3 more
2025Mitochondrion (Amsterdam. Print)6 citations
Semantic Scholar
Adaptive Thermogenesis in a Mouse Model Lacking Selenoprotein Biosynthesis in Brown Adipocytes
Lucia A. Seale, Ashley N. Ogawa-Wong, L. M. Watanabe, V. Khadka +5 more
2021International Journal of Molecular Sciences5 citations Open access
Semantic Scholar
miR-125 family regulates XIRP1 and FIH in response to myocardial infarction.
A. L. Williams, V. Khadka, Ma C. T. Anagaran, Ka-Tie C. Y. Lee +3 more
2020Physiological Genomics5 citations Open access
Semantic Scholar
Pre-Conception Maternal Obesity Confers Autism Spectrum Disorder-like Behaviors in Mice Offspring Through Neuroepigenetic Dysregulation
Nina P Allan, Amada Torres, Michael J. Corley, Brennan Y. Yamamoto +8 more
2025Cells4 citations Open access
Semantic Scholar
sRNAfrag: A pipeline and suite of tools to analyze fragmentation in small RNA sequencing data
Ken Nakatsu, M. Jijiwa, V. Khadka, Masaki Nasu +2 more
2023bioRxiv4 citations Open access
Semantic Scholar
Age-related changes in the transcriptomic profile associated with ovarian small white follicle recruitment in commercial laying hens
Suman Poudel, V. Khadka, R. Jha, Birendra Mishra
2025Poultry Science3 citations
Semantic Scholar

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